Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Ralstonia solanacearum MolK2

Reference regulog properties
Source regulog: Fur - Ralstonia
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Ralstonia solanacearum MolK2
Orthologous TF(s) RSMK04868, RSMK01821
Regulated genes 12
Built upon 94 sites [see more]
Predicted regulatory interactions in Ralstonia solanacearum MolK2
Locus tag Position Score Sequence
Position: -79
Score: 5.3
Sequence: AACGAGAATCATTCTCATT
Locus tag: RSMK02254
RSMK02254 -79 5.3 AACGAGAATCATTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DUF337-3
Ortholog function: Uncharacterized iron-regulated membrane protein, DUF337 family
Ralstonia solanacearum GMI1000 RS00511 -81 5.3 AACGAGAATCATTCTCATT
Ralstonia pickettii 12J Rpic_3345 -75 4.7 AACGAGAATCATTCTCATC
Position: -89
Score: 4.9
Sequence: AATGAAAACGATTCGCATT
Locus tag: RSMK04863
RSMK04863 -89 4.9 AATGAAAACGATTCGCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Ralstonia solanacearum GMI1000 RS03714 -66 4.9 AATGAAAACGATTCGCATT
Ralstonia pickettii 12J Rpic_3949 -61 4.9 AATGAAAACGATTCGCATT
Ralstonia metallidurans CH34 Rmet_5891 -82 4.2 ATCGAGAACGATTTCTATT
Ralstonia eutropha JMP134 Reut_B5430 -80 5.2 AATGAAAACGATTTTCATT
Ralstonia eutropha H16 H16_B0085 -80 5.2 AATGAAAACGATTTTCATT
Cupriavidus taiwanensis RALTA_B0077 -83 5.2 AATGAAAACGATTTTCATT
Position: -115
Score: 5.6
Sequence: ATTGATAATGATTCTCATT
Locus tag: RSMK04872
RSMK04872 -115 5.6 ATTGATAATGATTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: RSp0244
Ortholog function: TonB-dependent outer-membrane hemin transporter
Ralstonia solanacearum GMI1000 RS03722 -223 5.5 ATTGATAATGATTCTTATT
-217 4.1 AATGATTCTTATTTGCATT
Position: -60
Score: 4.6
Sequence: AGTGATAATCACTCTCATT
Locus tag: RSMK05327
RSMK05327 -60 4.6 AGTGATAATCACTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: RSp0100
Ortholog function: putative iron-regulated TonB-dependent transporter
Ralstonia solanacearum GMI1000 RS03023 -59 4.6 AGTGATAATCACTCTCATT
Position: -83
Score: 5.5
Sequence: AATGATAACGATTCTCATT
Locus tag: RSMK01441
RSMK01441 -83 5.5 AATGATAACGATTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemP
Ortholog function: putative hemin uptake protein
Ralstonia solanacearum GMI1000 RSc1966 -82 5.5 AATGATAACGATTCTCATT
Ralstonia pickettii 12J Rpic_2119 -70 5.6 AATGATAACTATTCTCATT
Position: -217
Score: 4.9
Sequence: AATAGGAATCATTATCGTT
Locus tag: RSMK01438
RSMK01438 -217 4.9 AATAGGAATCATTATCGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tonB
Ortholog function: Component of outer membrane metal uptake system, TonB family
Ralstonia solanacearum GMI1000 RSc1963 -287 5 AATGGGAATCATTATCGTT
Ralstonia pickettii 12J Rpic_2116 -289 4.9 AATAGGAATCATTATCGTT
Ralstonia metallidurans CH34 Rmet_2277 -208 5.3 AATAAGAATCATTATCGTT
Ralstonia eutropha JMP134 Reut_A2235 -187 5.3 AATAAGAATCATTATCGTT
Ralstonia eutropha H16 H16_A2532 -208 5.3 AATAAGAATCATTATCGTT
Cupriavidus taiwanensis RALTA_A2036 -206 5.3 AATAAGAATCATTATCGTT
Position: -153
Score: 5.1
Sequence: AATAGGAATTGTTCTCATT
Locus tag: RSMK03109
RSMK03109 -153 5.1 AATAGGAATTGTTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: h16_A3182
Ortholog function: putative iron-regulated TonB-dependent transporter
Ralstonia solanacearum GMI1000 RS02469 -153 5.1 AATGGGAATTGTTCTCATT
Ralstonia pickettii 12J Rpic_4266 -100 5.1 AATAGGAATTGTTCTCATT
Ralstonia eutropha JMP134 Reut_A2878 -51 5 AATGATAATGCTTCGCATT
Ralstonia eutropha H16 H16_A3182 -153 4.7 AATAGGAATAATTCGCAAT
Cupriavidus taiwanensis RALTA_A2655 -92 4.7 AATAGGAATAATTCGCAAT
Position: -77
Score: 5
Sequence: AACAAGAATTGTTCTCATT
Locus tag: RSMK04000
RSMK04000 -77 5 AACAAGAATTGTTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfd
Ortholog function: Bacterioferritin-associated ferredoxin
Ralstonia solanacearum GMI1000 RSc0349 -77 5 AACAAGAATTGTTCTCATT
Ralstonia pickettii 12J Rpic_0205 -75 5 AACAAGAATTGTTCTCATT
Ralstonia metallidurans CH34 Rmet_0247 -91 5.2 AATGGGAATTGTTATCATT
Ralstonia eutropha JMP134 Reut_A0298 -1 5.2 AAtGggAATTgTTATCaTT
Ralstonia eutropha H16 H16_A0327 -89 5.2 AATGGGAATTGTTATCATT
Cupriavidus taiwanensis RALTA_A0266 -56 5.2 AATGGGAATTGTTATCATT
Position: -252
Score: 5.1
Sequence: ATTAGGAATGATTCTCATT
Position: -70
Score: 5.6
Sequence: ATTGAGAATAATTCTCATT
Locus tag: RSMK04717
RSMK04717 -252 5.1 ATTAGGAATGATTCTCATT
-70 5.6 ATTGAGAATAATTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ffcA2
Ortholog function: putative iron-regulated TonB-dependent siderophore transporter
Ralstonia solanacearum GMI1000 RS00871 -254 5 ATCAAGAATGATTCTCATT
-70 5.6 ATTGAGAATAATTCTCATT
Ralstonia eutropha JMP134 Reut_B3686 -108 4.6 CTTGATAATGATTCGCATT
Position: -229
Score: 5.6
Sequence: AATGAGAATTATTCTCAAT
Locus tag: RSMK04716
RSMK04716 -229 5.6 AATGAGAATTATTCTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fecI
Ortholog function: Probable RNA polymerase sigma factor FecI
Ralstonia solanacearum GMI1000 RS00872 -237 5.6 AATGAGAATTATTCTCAAT
-53 5 AATGAGAATCATTCTTGAT
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