Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of FadP regulog to Ralstonia eutropha H16

Reference regulog properties
Source regulog: FadP - Ralstonia
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode:
Biological process: Fatty acid degradation
Effector:
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Ralstonia eutropha H16
Orthologous TF(s) H16_A0459
Regulated genes 15
Built upon 85 sites [see more]
Predicted regulatory interactions in Ralstonia eutropha H16
Locus tag Position Score Sequence
Position: -32
Score: 4.9
Sequence: ACGAACGACCGTTCAC
Locus tag: H16_A0165
H16_A0165 -32 4.9 ACGAACGACCGTTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: liuR
Ortholog function: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Ralstonia metallidurans CH34 Rmet_0102 -32 5 ACGAACGATCGTTCAC
Ralstonia eutropha JMP134 Reut_A0133 -32 4.9 ACGAACGACCGTTCAC
Ralstonia eutropha H16 H16_A0165 -32 4.9 ACGAACGACCGTTCAC
Cupriavidus taiwanensis RALTA_A0108 -32 4.9 ACGAACGACCGTTCAC
Position: -46
Score: 5.6
Sequence: TCGAACGATCGTGCTA
Locus tag: H16_A0217
H16_A0217 -46 5.6 TCGAACGATCGTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Rmet_0145
Ortholog function: TesB-like acyl-CoA thioesterase 2
Ralstonia eutropha JMP134 Reut_A0190 -10 5.6 TCGAACGACCGTGCTA
Ralstonia eutropha H16 H16_A0217 -46 5.6 TCGAACGATCGTGCTA
Cupriavidus taiwanensis RALTA_A0160 -43 5.5 GCGAACGATCGTTCTA
Position: -59
Score: 5.2
Sequence: TCGAACGACCGTTCAT
Locus tag: H16_A0293
H16_A0293 -59 5.2 TCGAACGACCGTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nppD
Ortholog function: 2-nitropropane dioxygenase NPD
Ralstonia metallidurans CH34 Rmet_0222 -39 5.4 TCGAACGATCGTTCCA
Ralstonia eutropha JMP134 Reut_A0268 -58 5.2 TCGAACGACCGTTCAT
Ralstonia eutropha H16 H16_A0293 -59 5.2 TCGAACGACCGTTCAT
Cupriavidus taiwanensis RALTA_A0233 -58 5.2 TCGAACGACCGTTCAC
Position: -143
Score: 4.9
Sequence: CTGAACGACCGTTCTT
Locus tag: H16_A0459
H16_A0459 -143 4.9 CTGAACGACCGTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadP
Ortholog function: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
Ralstonia solanacearum GMI1000 RS04423 -136 5.7 TTGAACGATCGTTCGA
Ralstonia pickettii 12J Rpic_0347 -136 5.6 TTGAACGACCGTTCGA
Ralstonia metallidurans CH34 Rmet_0384 -142 4.9 CTGAACGACCGTTCTT
Ralstonia eutropha JMP134 Reut_A0445 -140 4.9 CTGAACGACCGTTCTT
Ralstonia eutropha H16 H16_A0459 -143 4.9 CTGAACGACCGTTCTT
Cupriavidus taiwanensis RALTA_A0402 -141 4.9 CTGAACGACCGTTCTT
Position: -98
Score: 5.5
Sequence: TAGTACGATCGTTCGA
Locus tag: H16_A0814
H16_A0814 -98 5.5 TAGTACGATCGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: etfB
Ortholog function: Electron transfer flavoprotein, beta subunit
Ralstonia solanacearum GMI1000 RSc0923 -95 5.2 TAGCACGACCGTTCGT
Ralstonia pickettii 12J Rpic_0793 -96 5.1 TAGCACGACCGTTCGG
Ralstonia metallidurans CH34 Rmet_0737 -48 5.5 TAGTACGATCGTTCGA
Ralstonia eutropha JMP134 Reut_A2550 -97 5.5 TAGTACGATCGTTCGA
Ralstonia eutropha H16 H16_A0814 -98 5.5 TAGTACGATCGTTCGA
Cupriavidus taiwanensis RALTA_A0795 -98 5.5 TAGTACGATCGTTCGA
Position: -87
Score: 5.3
Sequence: CCGAACGGTCGTTCTA
Position: -64
Score: 5.2
Sequence: TAGCACGACCGTTCAC
Locus tag: H16_A1066
H16_A1066 -87 5.3 CCGAACGGTCGTTCTA
-64 5.2 TAGCACGACCGTTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: RSc2046
Ortholog function: conserved hypothetical protein, DUF1178
Ralstonia solanacearum GMI1000 RS03611 -63 5.5 TAGCACGACCGTTCAA
Ralstonia pickettii 12J Rpic_2198 -85 5.1 GCGAACGGTCGTGCGA
-63 5.2 TAGCACGACCGTTCAC
Ralstonia metallidurans CH34 Rmet_0943 -62 5.2 TAGCACGACCGTTCAC
Ralstonia eutropha JMP134 Reut_A0977 -64 5.2 TAGCACGACCGTTCAC
Ralstonia eutropha H16 H16_A1066 -87 5.3 CCGAACGGTCGTTCTA
-64 5.2 TAGCACGACCGTTCAC
Cupriavidus taiwanensis RALTA_A1050 -87 5.4 ACGAACGGTCGTTCTA
-64 5.2 TAGCACGACCGTTCAC
Position: -43
Score: 4.9
Sequence: ACGTACGATCGTGCTA
Locus tag: H16_A1102
H16_A1102 -43 4.9 ACGTACGATCGTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaH1
Ortholog function: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation
Ralstonia solanacearum GMI1000 RSc2013 -49 4.9 TCGCACGCTCGTGCTA
Ralstonia pickettii 12J Rpic_2168 -53 4.9 TCGCACGCTCGTGCTA
Ralstonia metallidurans CH34 Rmet_0974 -44 4.9 ACGTACGATCGTGCTA
Ralstonia eutropha JMP134 Reut_A1010 -43 4.9 ACGTACGATCGTGCTA
Ralstonia eutropha H16 H16_A1102 -43 4.9 ACGTACGATCGTGCTA
Cupriavidus taiwanensis RALTA_A1087 -31 4.9 ACGTACGATCGTGCTA
Position: -91
Score: 5.5
Sequence: TAGAACGATCGTTCGC
Locus tag: H16_A1197
H16_A1197 -91 5.5 TAGAACGATCGTTCGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: acsA
Ortholog function: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Ralstonia metallidurans CH34 Rmet_1061 -16 5.4 TAGAACGGTCGTTCGC
Ralstonia eutropha JMP134 Reut_A1097 -49 5.4 TAGAACGACCGTTCGC
Ralstonia eutropha H16 H16_A1197 -91 5.5 TAGAACGATCGTTCGC
Cupriavidus taiwanensis RALTA_A1174 -95 5.5 TAGAACGATCGTTCGC
Position: -248
Score: 5.1
Sequence: AAGAACGACCGTTCCA
Locus tag: H16_A1324
H16_A1324 -248 5.1 AAGAACGACCGTTCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: etfD
Ortholog function: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Ralstonia solanacearum GMI1000 RSc1567 -120 5.6 TCGAACGACCGTTCAA
Ralstonia pickettii 12J Rpic_1986 -121 5.2 TCGAACGATCGTTCAG
Ralstonia metallidurans CH34 Rmet_1146 -243 5.4 AAGAACGGTCGTTCAA
Ralstonia eutropha JMP134 Reut_A1262 -211 5.1 AAGAACGACCGTTCCA
Ralstonia eutropha H16 H16_A1324 -248 5.1 AAGAACGACCGTTCCA
Cupriavidus taiwanensis RALTA_A1245 -288 5.1 AAGAACGACCGTTCCA
Position: -73
Score: 4.5
Sequence: AAGTACGCTCGTTCGA
Locus tag: H16_A1445
H16_A1445 -73 4.5 AAGTACGCTCGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: bktB
Ortholog function: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Ralstonia solanacearum GMI1000 RSc1637 -59 4.8 TCGAACGATCGTTTGC
Ralstonia pickettii 12J Rpic_1910 -59 4.7 GCGAACGGTCGTGCGT
Ralstonia metallidurans CH34 Rmet_1362 -72 4.7 AAGTACGGTCGTTCGT
Ralstonia eutropha JMP134 Reut_A1353 -71 5.1 AAGTACGATCGTTCGA
Ralstonia eutropha H16 H16_A1445 -73 4.5 AAGTACGCTCGTTCGA
Cupriavidus taiwanensis RALTA_A1359 -72 4.6 AAGTACGACCGTTCAC
Position: -55
Score: 4.4
Sequence: TAGTACGGTTGTTCGT
Locus tag: H16_A1519
H16_A1519 -55 4.4 TAGTACGGTTGTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: alkK
Ortholog function: Medium-chain-fatty-acid-CoA ligase
Ralstonia solanacearum GMI1000 RSc1749 -42 4.6 TAGAACGGTTGTTCAG
Ralstonia pickettii 12J Rpic_1455 -34 4.6 TAGAACGGTTGTTCAG
Ralstonia metallidurans CH34 Rmet_1863 -73 4.6 TAGCACGATTGTTCGT
Ralstonia eutropha JMP134 Reut_A1398 -54 4.7 TAGAACGGTTGTTCGT
Ralstonia eutropha H16 H16_A1519 -55 4.4 TAGTACGGTTGTTCGT
Cupriavidus taiwanensis RALTA_A1460 -73 4.6 GCGAACGACCGTCCAA
-54 4.4 TAGTACGGTTGTTCGT
Position: -214
Score: 5.5
Sequence: TTGAACGACCGTGCTA
Locus tag: H16_A1526
H16_A1526 -214 5.5 TTGAACGACCGTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadB
Ortholog function: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Ralstonia solanacearum GMI1000 RS02946 -101 5.5 TTGAACGACCGTGCTA
Ralstonia pickettii 12J Rpic_1447 -141 5.5 TTGAACGACCGTGCTA
Ralstonia metallidurans CH34 Rmet_1855 -165 5.5 TTGAACGACCGTGCTA
Ralstonia eutropha JMP134 Reut_A1405 -203 5.5 TTGAACGACCGTGCTA
Ralstonia eutropha H16 H16_A1526 -214 5.5 TTGAACGACCGTGCTA
Cupriavidus taiwanensis RALTA_A1467 -218 5.5 TTGAACGACCGTGCTA
Position: -97
Score: 5.3
Sequence: TCGAACGATCGTTCAC
Locus tag: H16_A1554
H16_A1554 -97 5.3 TCGAACGATCGTTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: RSc1772
Ortholog function: Alpha/beta hydrolase fold-3 domain protein
Ralstonia solanacearum GMI1000 RS02959 41 5 AAGAACGATCGTTCAG
Ralstonia pickettii 12J Rpic_1434 -27 5.3 TAGAACGATCGTTCAG
Ralstonia metallidurans CH34 Rmet_1843 36 5.2 TCGAACGACCGTTCAG
Ralstonia eutropha JMP134 Reut_A1419 12 5.2 TCGAACGACCGTTCAC
Ralstonia eutropha H16 H16_A1554 -97 5.3 TCGAACGATCGTTCAC
Cupriavidus taiwanensis RALTA_A1480 -97 5.3 TCGAACGATCGTTCAC
Position: -74
Score: 5.4
Sequence: TAGAACGATCGTTCGG
Locus tag: H16_A2794
H16_A2794 -74 5.4 TAGAACGATCGTTCGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD2
Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Ralstonia solanacearum GMI1000 RSc0780 -58 5.3 TAGAACGATCGTTCAG
Ralstonia pickettii 12J Rpic_0727 -60 5.4 TAGAACGATCGTTCGG
Ralstonia metallidurans CH34 Rmet_2635 -106 5.3 TAGAACGGTCGTTCAG
Ralstonia eutropha JMP134 Reut_A0823 -73 5.4 TAGAACGATCGTTCGG
Ralstonia eutropha H16 H16_A2794 -74 5.4 TAGAACGATCGTTCGG
Cupriavidus taiwanensis RALTA_A2284 -73 5.4 TAGAACGATCGTTCGG
Position: -34
Score: 4.7
Sequence: TCGAACGACCATTCAG
Locus tag: H16_A3288
H16_A3288 -34 4.7 TCGAACGACCATTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD1
Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Ralstonia solanacearum GMI1000 RSc2857 -47 5.2 TCGAACGACCATTCGA
Ralstonia pickettii 12J Rpic_3104 -46 4.8 ACGAACGACCATTCGA
Ralstonia metallidurans CH34 Rmet_3148 -32 4.7 TCGAACGACCATTCAG
Ralstonia eutropha JMP134 Reut_A2994 -34 4.7 TCGAACGACCATTCAG
Ralstonia eutropha H16 H16_A3288 -34 4.7 TCGAACGACCATTCAG
Cupriavidus taiwanensis RALTA_A2744 -35 4.7 TCGAACGACCATTCAG
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