Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Ralstonia eutropha H16

Reference regulog properties
Source regulog: Fur - Ralstonia
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Ralstonia eutropha H16
Orthologous TF(s) H16_A3143, H16_B0116
Regulated genes 16
Built upon 94 sites [see more]
Predicted regulatory interactions in Ralstonia eutropha H16
Locus tag Position Score Sequence
Position: -89
Score: 5.2
Sequence: AATGGGAATTGTTATCATT
Locus tag: H16_A0327
H16_A0327 -89 5.2 AATGGGAATTGTTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfd
Ortholog function: Bacterioferritin-associated ferredoxin
Ralstonia solanacearum GMI1000 RSc0349 -77 5 AACAAGAATTGTTCTCATT
Ralstonia pickettii 12J Rpic_0205 -75 5 AACAAGAATTGTTCTCATT
Ralstonia metallidurans CH34 Rmet_0247 -91 5.2 AATGGGAATTGTTATCATT
Ralstonia eutropha JMP134 Reut_A0298 -1 5.2 AAtGggAATTgTTATCaTT
Ralstonia eutropha H16 H16_A0327 -89 5.2 AATGGGAATTGTTATCATT
Cupriavidus taiwanensis RALTA_A0266 -56 5.2 AATGGGAATTGTTATCATT
Position: -87
Score: 5.5
Sequence: ATTGAGAATCATTATTATT
Locus tag: H16_A0796
H16_A0796 -87 5.5 ATTGAGAATCATTATTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: h16_A0796
Ortholog function: putative exported protein
Ralstonia metallidurans CH34 Rmet_0720 -120 5 ATTGATACTCATTATCATT
Ralstonia eutropha JMP134 Reut_A2571 -90 5.2 ATTGCGAATCATTATCATT
Ralstonia eutropha H16 H16_A0796 -87 5.5 ATTGAGAATCATTATTATT
Cupriavidus taiwanensis RALTA_A0777 -84 5.6 ATTGAGAATCATTATCATT
Position: -46
Score: 5
Sequence: AATGCGAATCATTACCATT
Locus tag: H16_A1451
H16_A1451 -46 5 AATGCGAATCATTACCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: h16_A1451
Ortholog function: putative transmembrane lipoprotein
Ralstonia metallidurans CH34 Rmet_1367 -78 5.3 AATACGAATCATTATTATT
Ralstonia eutropha H16 H16_A1451 -46 5 AATGCGAATCATTACCATT
Cupriavidus taiwanensis RALTA_A1365 -46 5.4 AATGCGAATCATTATTATT
Position: -81
Score: 5.6
Sequence: AATGATAACAATTCTCATT
Locus tag: H16_A2535
H16_A2535 -81 5.6 AATGATAACAATTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemP
Ortholog function: hemin uptake protein
Ralstonia metallidurans CH34 Rmet_2280 -73 5.6 AATGATAACAATTCTCATT
Ralstonia eutropha JMP134 Reut_A2238 -107 5.1 AATGGTAATGGTTCTCATT
Ralstonia eutropha H16 H16_A2535 -81 5.6 AATGATAACAATTCTCATT
Cupriavidus taiwanensis RALTA_A2040 -108 5.6 AATGATAACAATTCTCATT
Position: -153
Score: 4.7
Sequence: AATAGGAATAATTCGCAAT
Locus tag: H16_A3182
H16_A3182 -153 4.7 AATAGGAATAATTCGCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: h16_A3182
Ortholog function: putative iron-regulated TonB-dependent transporter
Ralstonia solanacearum GMI1000 RS02469 -153 5.1 AATGGGAATTGTTCTCATT
Ralstonia pickettii 12J Rpic_4266 -100 5.1 AATAGGAATTGTTCTCATT
Ralstonia eutropha JMP134 Reut_A2878 -51 5 AATGATAATGCTTCGCATT
Ralstonia eutropha H16 H16_A3182 -153 4.7 AATAGGAATAATTCGCAAT
Cupriavidus taiwanensis RALTA_A2655 -92 4.7 AATAGGAATAATTCGCAAT
Position: -80
Score: 5.2
Sequence: AATGAAAACGATTTTCATT
Locus tag: H16_B0085
H16_B0085 -80 5.2 AATGAAAACGATTTTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Ralstonia solanacearum GMI1000 RS03714 -66 4.9 AATGAAAACGATTCGCATT
Ralstonia pickettii 12J Rpic_3949 -61 4.9 AATGAAAACGATTCGCATT
Ralstonia metallidurans CH34 Rmet_5891 -82 4.2 ATCGAGAACGATTTCTATT
Ralstonia eutropha JMP134 Reut_B5430 -80 5.2 AATGAAAACGATTTTCATT
Ralstonia eutropha H16 H16_B0085 -80 5.2 AATGAAAACGATTTTCATT
Cupriavidus taiwanensis RALTA_B0077 -83 5.2 AATGAAAACGATTTTCATT
Position: -86
Score: 4.6
Sequence: ATGAGAAATTATTATCATT
Locus tag: H16_B0785
H16_B0785 -86 4.6 ATGAGAAATTATTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuA4
Ortholog function: Putative ferrichrome-iron TonB-dependent transporter
Ralstonia eutropha H16 H16_B0785 -86 4.6 ATGAGAAATTATTATCATT
Position: -84
Score: 4.7
Sequence: ATTACGAATTATTCGCATT
Locus tag: H16_B1100
H16_B1100 -84 4.7 ATTACGAATTATTCGCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuA1
Ortholog function: TonB-dependent siderophore transporter, hydroxomate-type
Ralstonia eutropha H16 H16_B1100 -84 4.7 ATTACGAATTATTCGCATT
Cupriavidus taiwanensis RALTA_B0923 -84 4.2 ATCACGAATCATTCCTATT
Position: -80
Score: 4.8
Sequence: AATAGGAATCATTCTGATT
Locus tag: H16_B1489
H16_B1489 -80 4.8 AATAGGAATCATTCTGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aleB
Ortholog function: putative iron-regulated TonB-dependent siderophore transporter
Ralstonia solanacearum GMI1000 RS00873 -237 5.6 AATGAGAATTATTCTCAAT
-53 5 AATGAGAATCATTCTTGAT
Ralstonia metallidurans CH34 Rmet_1118 -56 4.6 AATGATAATAGGTCGCATT
Ralstonia eutropha H16 H16_B1489 -80 4.8 AATAGGAATCATTCTGATT
Cupriavidus taiwanensis RALTA_B0897 -70 5.1 ATCGAGAATCATTATCATT
Position: -195
Score: 4.7
Sequence: AATGAGAATGATTATCAGG
Locus tag: H16_B1683
H16_B1683 -195 4.7 AATGAGAATGATTATCAGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: h16_B1683
Ortholog function: Non-ribosomal peptide synthetase modules and related proteins
Ralstonia eutropha H16 H16_B1683 -195 4.7 AATGAGAATGATTATCAGG
Position: -74
Score: 4.7
Sequence: CCTGATAATCATTCTCATT
Locus tag: H16_B1684
H16_B1684 -74 4.7 CCTGATAATCATTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuF
Ortholog function: putative iron transport-related membrane protein
Ralstonia eutropha H16 H16_B1684 -74 4.7 CCTGATAATCATTCTCATT
Position: -170
Score: 5.2
Sequence: AATGATAATGATTTGTATT
Locus tag: H16_B1688
H16_B1688 -170 5.2 AATGATAATGATTTGTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: h16_B1688
Ortholog function: pyoverdine biosynthesis regulatory gene
Ralstonia eutropha H16 H16_B1688 -170 5.2 AATGATAATGATTTGTATT
Position: -118
Score: 5.2
Sequence: AATACAAATCATTATCATT
Locus tag: H16_B1689
H16_B1689 -118 5.2 AATACAAATCATTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mbtH
Ortholog function: Siderophore biosynthesis protein
Ralstonia eutropha H16 H16_B1689 -118 5.2 AATACAAATCATTATCATT
Position: -223
Score: 4.9
Sequence: AATACAAACCATTCTCATT
Locus tag: H16_B1976
H16_B1976 -223 4.9 AATACAAACCATTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuA3
Ortholog function: TonB-dependent siderophore transporter, hydroxamate-type
Ralstonia eutropha H16 H16_B1976 -223 4.9 AATACAAACCATTCTCATT
Cupriavidus taiwanensis RALTA_B1494 -57 5.3 AACAAGAATTATTCTCATT
Position: -129
Score: 5
Sequence: TATGAGAATGATTGTTATT
Locus tag: H16_B2095
H16_B2095 -129 5 TATGAGAATGATTGTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fepA
Ortholog function: TonB-dependent outer membrane iron transport protein
Ralstonia eutropha H16 H16_B2095 -129 5 TATGAGAATGATTGTTATT
Cupriavidus taiwanensis RALTA_B1811 -153 5 TATGAGAATGATTGTTATT
Position: -73
Score: 5
Sequence: AATGCGAATTATTCGCATT
Locus tag: H16_B2476
H16_B2476 -73 5 AATGCGAATTATTCGCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: h16_B2476
Ortholog function: Putative TonB-dependent siderophore transporter
Ralstonia metallidurans CH34 Rmet_1819 -54 4.6 AATACGAATTGTTCGTATT
Ralstonia eutropha H16 H16_B2476 -73 5 AATGCGAATTATTCGCATT
Cupriavidus taiwanensis RALTA_B2199 -67 5 AATGCGAATTATTCGCATT
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