Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LiuQ regulog to Ralstonia eutropha H16

Reference regulog properties
Source regulog: LiuQ - Ralstonia
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Ralstonia eutropha H16
Orthologous TF(s) H16_A1970
Regulated genes 2
Built upon 14 sites [see more]
Predicted regulatory interactions in Ralstonia eutropha H16
Locus tag Position Score Sequence
Position: -72
Score: 5.3
Sequence: TTGAGTAAAGCTCAA
Locus tag: H16_A1970
H16_A1970 -72 5.3 TTGAGTAAAGCTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: liuQ
Ortholog function: Predicted branched-chain amino acid degradation regulator LiuQ, TetR family
Ralstonia metallidurans CH34 Rmet_0611 -212 5.6 TTGAGTAATACTCAA
-111 5.1 TTGAGTAACATTCAA
Ralstonia eutropha JMP134 Reut_A1468 -154 5.3 TTGAGCGTAGCTCAA
-46 5 TTGAGTGTTGGTCAA
Ralstonia eutropha H16 H16_A1970 -247 5 GTGAGTGTTACTCAA
-72 5.3 TTGAGTAAAGCTCAA
Position: -234
Score: 5.3
Sequence: TTGAGCTTTACTCAA
Position: -59
Score: 5
Sequence: TTGAGTAACACTCAC
Locus tag: H16_A1971
H16_A1971 -234 5.3 TTGAGCTTTACTCAA
-59 5 TTGAGTAACACTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: aacS
Ortholog function: AMP-dependent synthetase and ligase
Ralstonia metallidurans CH34 Rmet_0610 -149 5.1 TTGAATGTTACTCAA
-48 5.6 TTGAGTATTACTCAA
Ralstonia eutropha JMP134 Reut_A1467 -167 5 TTGACCAACACTCAA
-59 5.3 TTGAGCTACGCTCAA
Ralstonia eutropha H16 H16_A1971 -234 5.3 TTGAGCTTTACTCAA
-59 5 TTGAGTAACACTCAC
Cupriavidus taiwanensis RALTA_A1548 -215 4.6 TTGAGTCAACCTCAA
-50 4.8 TTGAGTTGTGCTCAA