Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NtrC regulog to Ralstonia eutropha H16

Reference regulog properties
Source regulog: NtrC - Ralstonia
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Ralstonia eutropha H16
Orthologous TF(s) H16_A2332
Regulated genes 4
Built upon 28 sites [see more]
Predicted regulatory interactions in Ralstonia eutropha H16
Locus tag Position Score Sequence
Position: -95
Score: 4.7
Sequence: TGCACCAGAAAGGGGCG
Locus tag: H16_A2334
H16_A2334 -95 4.7 TGCACCAGAAAGGGGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntrZ
Ortholog function: Conserved hypothetical signal peptide protein
Ralstonia solanacearum GMI1000 RS02776 -334 5.1 CGCACTATGATGGTGCG
Ralstonia pickettii 12J Rpic_1087 -346 4.7 TGCACCGTTTATGTGCG
Ralstonia metallidurans CH34 Rmet_2061 -193 4.4 TGCACCAGGAAGGGGCG
Ralstonia eutropha JMP134 Reut_A2056 -80 4.6 AGCACCATCAAGGGGCG
Ralstonia eutropha H16 H16_A2334 -95 4.7 TGCACCAGAAAGGGGCG
Cupriavidus taiwanensis RALTA_A1879 -190 4.5 TGCACCACAAGGGGGCG
Position: -295
Score: 4.7
Sequence: TGCACCATTGTGGTGTT
Locus tag: H16_A2335
H16_A2335 -295 4.7 TGCACCATTGTGGTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Ralstonia solanacearum GMI1000 RSc1258 -334 5.1 CGCACTATGATGGTGCG
Ralstonia pickettii 12J Rpic_1086 -346 4.7 TGCACCGTTTATGTGCG
Ralstonia metallidurans CH34 Rmet_2062 -297 4.9 CGCACCGTTATGGTGTT
Ralstonia eutropha JMP134 Reut_A2057 -319 4.9 CGCACCGTTATGGTGTT
Ralstonia eutropha H16 H16_A2335 -295 4.7 TGCACCATTGTGGTGTT
Cupriavidus taiwanensis RALTA_A1880 -334 4.8 CGCACTAATGCGGTGCG
-304 4.7 TGCACCATGATGGTGTT
Position: -93
Score: 4.7
Sequence: CGCACCAAAACGCAGCG
Locus tag: H16_A3298
H16_A3298 -93 4.7 CGCACCAAAACGCAGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppA
Ortholog function: Dipeptide ABC transporter, substrate-binding component
Ralstonia solanacearum GMI1000 RSc2870 -193 4.6 TGCACCAATTTGTGGCG
Ralstonia metallidurans CH34 Rmet_3158 -218 4.5 CGCAGCATTGCGGGGCA
-91 4.3 CGCACCAAAATGCGGCC
Ralstonia eutropha JMP134 Reut_A3006 -93 4.9 CGCACCAAAATGCAGCG
Ralstonia eutropha H16 H16_A3298 -93 4.7 CGCACCAAAACGCAGCG
Cupriavidus taiwanensis RALTA_A2753 -93 4.6 CGCACCAAAAAGCAGCG
Position: -221
Score: 5.1
Sequence: CGCACCATAACGGTTCA
Position: -188
Score: 4.9
Sequence: CGCGCCATTTTGGCGCA
Locus tag: H16_B1234
H16_B1234 -221 5.1 CGCACCATAACGGTTCA
-188 4.9 CGCGCCATTTTGGCGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amtB
Ortholog function: Ammonium transporter
Ralstonia pickettii 12J Rpic_0087 -137 4.9 CGCACGACCATGGTGCG
Ralstonia metallidurans CH34 Rmet_4750 -185 4.5 TGCGCCATCACGGCGCA
Ralstonia eutropha JMP134 Reut_B4038 -232 4.7 TGCACCACTAAGGTTCA
-91 4.6 TCCACCATGAAGGTGCA
Ralstonia eutropha H16 H16_B1234 -221 5.1 CGCACCATAACGGTTCA
-188 4.9 CGCGCCATTTTGGCGCA
Cupriavidus taiwanensis RALTA_B1139 -187 4.9 CGCGCCATTTTGGCGCA
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