Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LexA regulog to Burkholderia cepacia AMMD

Reference regulog properties
Source regulog: LexA - Ralstonia
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Burkholderia cepacia AMMD
Orthologous TF(s) Bamb_1496
Regulated genes 3
Built upon 62 sites [see more]
Predicted regulatory interactions in Burkholderia cepacia AMMD
Locus tag Position Score Sequence
Position: -34
Score: 6.5
Sequence: TACTGTATAAATATACAGTA
Locus tag: Bamb_0942
Bamb_0942 -34 6.5 TACTGTATAAATATACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: PF04055
Ortholog function: DNA repair photolyase
Ralstonia metallidurans CH34 Rmet_0742 -48 6.5 TACTGTATATTTATACAGTA
Ralstonia eutropha H16 H16_A0887 -44 6.5 TACTGTATATATATACAGTG
Position: -45
Score: 5.7
Sequence: TACTGTATAAAAATACAGCT
Locus tag: Bamb_1496
Bamb_1496 -45 5.7 TACTGTATAAAAATACAGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response repressor and protease LexA (EC 3.4.21.88)
Ralstonia solanacearum GMI1000 RSc1304 -44 5.3 CACTGTATAAAATCACAGCA
-25 5.4 ACCTGTTCAAATATACAGTG
Ralstonia pickettii 12J Rpic_1179 -44 5.3 CACTGTATAAAATCACAGCA
-25 5.4 ACCTGTTCAAATATACAGTG
Ralstonia metallidurans CH34 Rmet_1981 -63 5.4 TACTGTATAAAATCACAGCA
-43 6 TACTGTTTAAACATACAGTG
Ralstonia eutropha JMP134 Reut_A2008 -95 5 TACTGTATAAAATCACAGGC
-74 6 TACTGTTTAAACATACAGTG
Ralstonia eutropha H16 H16_A2281 -121 5.4 TACTGTATAAAATCACAGCA
-101 6 TACTGTTTAAACATACAGTG
Cupriavidus taiwanensis RALTA_A1825 -118 5.4 TACTGTATAAAATCACAGCA
-98 6 TACTGTTTAAACATACAGTG
Position: -57
Score: 6.1
Sequence: AACTGTATGAATATACAGTA
Locus tag: Bamb_6248
Bamb_6248 -57 6.1 AACTGTATGAATATACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrA
Ortholog function: Excinuclease ABC subunit A
Ralstonia metallidurans CH34 Rmet_4549 -150 6.1 CACTGTATGTTCATACAGTA
Ralstonia eutropha JMP134 Reut_B4240 -160 5.6 CACTGTACGGATATACAGTC
Ralstonia eutropha H16 H16_B1571 -72 5.7 GACTGTATGGATGTACAGTG
Cupriavidus taiwanensis RALTA_B1379 -71 5.7 GACTGTATGGATGTACAGTG
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