Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PsrA regulog to Burkholderia sp. CCGE1002

Reference regulog properties
Source regulog: PsrA - Ralstonia
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid degradation
Effector: Oleate
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Burkholderia sp. CCGE1002
Orthologous TF(s) BC1002_1218
Regulated genes 1
Built upon 9 sites [see more]
Predicted regulatory interactions in Burkholderia sp. CCGE1002
Locus tag Position Score Sequence
Position: -207
Score: 4.2
Sequence: TTCGGAACGGCCTTTTCATT
Position: -77
Score: 5.4
Sequence: AAAAAAACGATTGTTTCAAA
Position: -64
Score: 3.8
Sequence: TTTCAAATATCAATTTGAAT
Locus tag: BC1002_1218
BC1002_1218 -207 4.2 TTCGGAACGGCCTTTTCATT
-77 5.4 AAAAAAACGATTGTTTCAAA
-64 3.8 TTTCAAATATCAATTTGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: psrA
Ortholog function: Transcriptional regulator for fatty acid degradation PsrA, TetR family
Ralstonia solanacearum GMI1000 RS04928 -122 4.6 TTTAAAACATCCGTTCCTAA
Ralstonia pickettii 12J Rpic_0418 -121 4.5 TTTCAAACGTCTGTTCCTAA
Ralstonia eutropha JMP134 Reut_A3446 -120 3.6 ATTAGAGCAGGCATTCGAAT
Ralstonia eutropha H16 H16_A3736 -104 4 CTTCGTACAGCTGTTTCAAG
Cupriavidus taiwanensis RALTA_A3194 -105 4 CTTCGTACAGCTGTTTCAAG
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