Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of MalR regulog to Bacillus pumilus SAFR-032

Reference regulog properties
Source regulog: MalR - Bacillales
Regulator type: Transcription factor
Regulator family: CitB
Regulation mode: activator
Biological process: Malate utilization
Effector: MalK, sensor histidine kinase (malate)
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus pumilus SAFR-032
Orthologous TF(s) BPUM_2821
Regulated genes 3
Built upon 11 sites [see more]
Predicted regulatory interactions in Bacillus pumilus SAFR-032
Locus tag Position Score Sequence
Position: -97
Score: 8.3
Sequence: TTTATTTTACT-(10)-TTAATTTAGTT
Position: -96
Score: 8.3
Sequence: TTATTTTACTT-(9)-TTAATTTAGTT
Position: -92
Score: 7.4
Sequence: TTTACTTTTAT-(5)-TTAATTTAGTT
Position: -91
Score: 9.8
Sequence: TTACTTTTATT-(4)-TTAATTTAGTT
Locus tag: BPUM_2827
BPUM_2827 -97 8.3 TTTATTTTACT-(10)-TTAATTTAGTT
-96 8.3 TTATTTTACTT-(9)-TTAATTTAGTT
-92 7.4 TTTACTTTTAT-(5)-TTAATTTAGTT
-91 9.8 TTACTTTTATT-(4)-TTAATTTAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: maeN
Ortholog function: Malate Na(+) symporter
Bacillus licheniformis DSM 13 BLi03342 -98 9.4 TTAATTTAATT-(9)-TTATTTTAATT
Bacillus pumilus SAFR-032 BPUM_2827 -96 8.3 TTATTTTACTT-(9)-TTAATTTAGTT
Bacillus subtilis subsp. subtilis str. 168 BSU31580 -96 7.3 TTAATTTAATT-(9)-TTTTTTAACTT
Position: 9
Score: 6.4
Sequence: TTAAATATTTT-(13)-CCGATTTTTTT
Position: 10
Score: 5.7
Sequence: TAAATATTTTG-(12)-CCGATTTTTTT
Position: 13
Score: 5.7
Sequence: ATATTTTGATC-(13)-TTTTTTTCGTT
Locus tag: BPUM_3347
BPUM_3347 9 6.4 TTAAATATTTT-(13)-CCGATTTTTTT
10 5.7 TAAATATTTTG-(12)-CCGATTTTTTT
13 5.7 ATATTTTGATC-(13)-TTTTTTTCGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywkB
Ortholog function: Malate permease
Bacillus amyloliquefaciens FZB42 RBAM_034200 -206 -0.8 AACTTAAAAAA-(10)-AAATTAAGTAA
Bacillus licheniformis DSM 13 BLi03952 -242 -0.8 AACTTAATTAA-(10)-AAATTAACTAA
Bacillus pumilus SAFR-032 BPUM_3347 -209 0.5 AAATTAAATAA-(10)-AAATTATCTAA
Position: -225
Score: 5.5
Sequence: TCATTTGTACT-(4)-TAAATTAAATA
Position: -210
Score: 5.8
Sequence: TAAATTAAATA-(13)-ATTATCTAATT
Position: -104
Score: 6.8
Sequence: TTCGATTTCTT-(3)-ATAATTTTTTT
Position: -103
Score: 6.5
Sequence: TCGATTTCTTG-(2)-ATAATTTTTTT
Position: -99
Score: 5.7
Sequence: TTTCTTGTCAT-(2)-TTTTTTTGATT
Position: -92
Score: 5.1
Sequence: TCATAATTTTT-(4)-TTAAGGATTTT
Position: -90
Score: 7.1
Sequence: ATAATTTTTTT-(2)-TTAAGGATTTT
Position: -85
Score: 5.1
Sequence: TTTTTTGATTA-(13)-TTAATCGTTCT
Position: -77
Score: 5.8
Sequence: TTAAGGATTTT-(12)-TTCTTTAAATT
Position: -61
Score: 6.9
Sequence: TTAATCGTTCT-(13)-TCACTTTATTT
Position: -55
Score: 7
Sequence: GTTCTTTAAAT-(7)-TCACTTTATTT
Position: -54
Score: 7.1
Sequence: TTCTTTAAATT-(6)-TCACTTTATTT
Position: -51
Score: 6.4
Sequence: TTTAAATTAAT-(3)-TCACTTTATTT
Position: -50
Score: 7.9
Sequence: TTAAATTAATA-(2)-TCACTTTATTT
Position: -45
Score: 6.3
Sequence: TTAATAGTTCA-(2)-TTATTTATATT
Position: -42
Score: 5.4
Sequence: ATAGTTCACTT-(2)-TTTATATTTTA
Position: -33
Score: 5.8
Sequence: TTTATTTATAT-(12)-GTAGTTTTTGA
Position: -32
Score: 6.4
Sequence: TTATTTATATT-(11)-GTAGTTTTTGA
Position: -29
Score: 5.6
Sequence: TTTATATTTTA-(8)-GTAGTTTTTGA
Locus tag: BPUM_3348
BPUM_3348 -225 5.5 TCATTTGTACT-(4)-TAAATTAAATA
-210 5.8 TAAATTAAATA-(13)-ATTATCTAATT
-104 6.8 TTCGATTTCTT-(3)-ATAATTTTTTT
-103 6.5 TCGATTTCTTG-(2)-ATAATTTTTTT
-99 5.7 TTTCTTGTCAT-(2)-TTTTTTTGATT
-92 5.1 TCATAATTTTT-(4)-TTAAGGATTTT
-90 7.1 ATAATTTTTTT-(2)-TTAAGGATTTT
-85 5.1 TTTTTTGATTA-(13)-TTAATCGTTCT
-77 5.8 TTAAGGATTTT-(12)-TTCTTTAAATT
-61 6.9 TTAATCGTTCT-(13)-TCACTTTATTT
-55 7 GTTCTTTAAAT-(7)-TCACTTTATTT
-54 7.1 TTCTTTAAATT-(6)-TCACTTTATTT
-51 6.4 TTTAAATTAAT-(3)-TCACTTTATTT
-50 7.9 TTAAATTAATA-(2)-TCACTTTATTT
-45 6.3 TTAATAGTTCA-(2)-TTATTTATATT
-42 5.4 ATAGTTCACTT-(2)-TTTATATTTTA
-33 5.8 TTTATTTATAT-(12)-GTAGTTTTTGA
-32 6.4 TTATTTATATT-(11)-GTAGTTTTTGA
-29 5.6 TTTATATTTTA-(8)-GTAGTTTTTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywkA
Ortholog function: NAD-dependent malate dehydrogenase (EC 1.1.1.38)
Bacillus amyloliquefaciens FZB42 RBAM_034210 -206 -0.8 AACTTAAAAAA-(10)-AAATTAAGTAA
Bacillus licheniformis DSM 13 BLi03953 -242 -0.8 AACTTAATTAA-(10)-AAATTAACTAA
Bacillus pumilus SAFR-032 BPUM_3348 -209 0.5 AAATTAAATAA-(10)-AAATTATCTAA
Bacillus subtilis subsp. subtilis str. 168 BSU37050 -156 -1 AATTTAAATAA-(10)-AAATTAAGTAA
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