Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of KdgR regulog to Bacillus pumilus SAFR-032

Reference regulog properties
Source regulog: KdgR - Bacillales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Galacturonate utilization; Glucuronate utilization
Effector: 2-keto-3-deoxygluconate
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus pumilus SAFR-032
Orthologous TF(s) BPUM_3245
Regulated genes 3
Built upon 13 sites [see more]
Predicted regulatory interactions in Bacillus pumilus SAFR-032
Locus tag Position Score Sequence
Position: -33
Score: 6
Sequence: TTTGAAACCGGTACCAAG
Locus tag: BPUM_3244
BPUM_3244 -33 6 TTTGAAACCGGTACCAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgK
Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Bacillus licheniformis DSM 13 BLi03827 -197 6.2 TTTGGTAACGGTTTCAAA
-42 6.1 TTTGAAATCGGTTTCAAA
Bacillus pumilus SAFR-032 BPUM_3244 -33 6 TTTGAAACCGGTACCAAG
Bacillus subtilis subsp. subtilis str. 168 BSU22110 -173 6.2 TTTGGTAACGGTTTCAAA
-42 6.1 TTTGAAATCGGTTTCAAA
Position: -215
Score: 5.8
Sequence: TTTGGTATCGGTTTCAAG
Locus tag: BPUM_3245
BPUM_3245 -215 5.8 TTTGGTATCGGTTTCAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgR
Ortholog function: Transcriptional regulator of pectin utilization, LacI family
Bacillus licheniformis DSM 13 BLi03828 -197 6.2 TTTGGTAACGGTTTCAAA
-42 6.1 TTTGAAATCGGTTTCAAA
Bacillus pumilus SAFR-032 BPUM_3245 -215 5.8 TTTGGTATCGGTTTCAAG
-54 5.5 TTTGAAATCGGTTTCGAA
Bacillus subtilis subsp. subtilis str. 168 BSU22120 -173 6.2 TTTGGTAACGGTTTCAAA
-42 6.1 TTTGAAATCGGTTTCAAA
Position: -65
Score: 5.8
Sequence: CTTGAAACCGATACCAAA
Locus tag: BPUM_3246
BPUM_3246 -65 5.8 CTTGAAACCGATACCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduI
Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Bacillus licheniformis DSM 13 BLi03829 -231 6.1 TTTGAAACCGATTTCAAA
-76 6.2 TTTGAAACCGTTACCAAA
Bacillus pumilus SAFR-032 BPUM_3246 -226 5.5 TTCGAAACCGATTTCAAA
-65 5.8 CTTGAAACCGATACCAAA
Bacillus subtilis subsp. subtilis str. 168 BSU22130 -197 6.1 TTTGAAACCGATTTCAAA
-66 6.2 TTTGAAACCGTTACCAAA
© 2009-2020 RegPrecise