Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of TnrA regulog to Bacillus pumilus SAFR-032

Reference regulog properties
Source regulog: TnrA - Bacillales
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor (activator)
Biological process: Nitrogen assimilation
Effector: NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus pumilus SAFR-032
Orthologous TF(s) BPUM_1230
Regulated genes 40
Built upon 304 sites [see more]
Predicted regulatory interactions in Bacillus pumilus SAFR-032
Locus tag Position Score Sequence
Position: -70
Score: 4.5
Sequence: TGAGATAAAATCTGCCA
Locus tag: BPUM_0239
BPUM_0239 -70 4.5 TGAGATAAAATCTGCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydaB
Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Bacillus subtilis subsp. subtilis str. 168 BSU04170 -55 4.5 AGGAAGAAAATCTAACA
Bacillus amyloliquefaciens FZB42 RBAM_004400 -54 4.5 AGAAAGAAAATCTGACA
Bacillus pumilus SAFR-032 BPUM_0239 -70 4.5 TGAGATAAAATCTGCCA
Bacillus licheniformis DSM 13 BLi00300 3 4.3 CGTCACATAATCTCACC
Position: -183
Score: 3.8
Sequence: TTAAATAAATTCTTTCA
Position: -141
Score: 3.7
Sequence: TGAAAGAATTTTTCATA
Locus tag: BPUM_0343
BPUM_0343 -183 3.8 TTAAATAAATTCTTTCA
-141 3.7 TGAAAGAATTTTTCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yclF
Ortholog function: Di-tripeptide-proton ABC symporter
Bacillus subtilis subsp. subtilis str. 168 BSU03670 -212 3.6 TCTAAAATTTTATTAAA
-175 4.9 TGTAAGAAAATCTCACG
Bacillus amyloliquefaciens FZB42 RBAM_003840 -211 3.4 CTTTAAATTTTATTAAA
-174 4.9 AGTCAGATAATATAACA
Bacillus pumilus SAFR-032 BPUM_0343 -183 3.8 TTAAATAAATTCTTTCA
-141 3.7 TGAAAGAATTTTTCATA
Bacillus licheniformis DSM 13 BLi00449 -180 3.9 TATTAAAAAATCTTTCA
Geobacillus kaustophilus HTA426 GK2020 -44 3.5 TGAATTATTATATTAAA
Position: -73
Score: 3.8
Sequence: TGAAAGAATTTATTTAA
Locus tag: BPUM_0344
BPUM_0344 -73 3.8 TGAAAGAATTTATTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yclG
Ortholog function: Pectate lyase family protein
Bacillus subtilis subsp. subtilis str. 168 BSU03680 -121 4.9 CGTGAGATTTTCTTACA
Bacillus amyloliquefaciens FZB42 RBAM_003850 -121 4.9 TGTTATATTATCTGACT
Bacillus pumilus SAFR-032 BPUM_0344 -73 3.8 TGAAAGAATTTATTTAA
Bacillus licheniformis DSM 13 BLi00451 1 3.9 TGAAAGATTTTTTAATA
Position: -113
Score: 5.5
Sequence: TGTTATATTTTCTAACA
Locus tag: BPUM_0379
BPUM_0379 -113 5.5 TGTTATATTTTCTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lamB
Ortholog function: Lactam utilization protein LamB
Bacillus subtilis subsp. subtilis str. 168 BSU04050 -145 4.9 TGGTAGGTTTTCTGACA
-52 3.9 CGGGACAATAAATGACA
Bacillus amyloliquefaciens FZB42 RBAM_004280 -137 4.9 TGGTAGGTTTTCTGACA
Bacillus pumilus SAFR-032 BPUM_0379 -113 5.5 TGTTATATTTTCTAACA
Bacillus licheniformis DSM 13 BLi00498 -155 4.6 TGTGAGGTTTCCTAACA
Position: -34
Score: 4.7
Sequence: TGTTAAATAATTTCACA
Locus tag: BPUM_1042
BPUM_1042 -34 4.7 TGTTAAATAATTTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Bacillus subtilis subsp. subtilis str. 168 BSU11190 -40 4.7 TGTTAAATAATTTCACA
16 4.2 TGTTAGAAGATGGGACA
Bacillus amyloliquefaciens FZB42 RBAM_011190 -38 4.7 TGTTAAATAATTTCACA
Bacillus pumilus SAFR-032 BPUM_1042 -34 4.7 TGTTAAATAATTTCACA
Bacillus licheniformis DSM 13 BLi01206 -40 4.7 TGTTAAATAATTTCACA
Position: -82
Score: 4.1
Sequence: TGAGAGATTTTCTATCG
Locus tag: BPUM_1193
BPUM_1193 -82 4.1 TGAGAGATTTTCTATCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ykgA
Ortholog function: Arginine deiminase (EC 3.5.3.6)
Bacillus amyloliquefaciens FZB42 RBAM_012870 -86 4.4 GGTTAGATATTCTCTCA
-63 3.7 TTTCATTATTCATCACA
Bacillus pumilus SAFR-032 BPUM_1193 -82 4.1 TGAGAGATTTTCTATCG
Bacillus licheniformis DSM 13 BLi01401 -84 4.3 TGTCAGATTTTCTGGCT
Position: -80
Score: 5.5
Sequence: TGTTATATTTTCTAACA
Locus tag: BPUM_1230
BPUM_1230 -80 5.5 TGTTATATTTTCTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tnrA
Ortholog function: Transcriptional regulator of nitrogen assimilation, MerR family
Bacillus subtilis subsp. subtilis str. 168 BSU13310 -124 3.9 TGTTAATTTTTCTTCCG
-81 5.5 TGTTAGAAAATATGACA
Bacillus amyloliquefaciens FZB42 RBAM_013130 -124 4.1 TGTCAATTTTTCTGCCG
-81 4.8 CGTCAGAAAACCTGACA
Bacillus pumilus SAFR-032 BPUM_1230 -121 4 TGTCAACTTTCCTTCCA
-80 5.5 TGTTATATTTTCTAACA
Bacillus licheniformis DSM 13 BLi01490 -124 3.8 TGTAAACTTTTCTTCCG
-81 5.6 TGTTAGATTTTCTGACA
Anoxybacillus flavithermus WK1 Aflv_1544 -113 4.9 TGTTACTTTTTATAACA
-82 4.9 TGTTACTTTTTATAACA
-27 5.4 TGTTATAAAATATGACA
Geobacillus kaustophilus HTA426 GK1860 -86 3.9 TGTTAATTTTATTTACA
-33 4.6 CGTTAGAAAATATAACG
Bacillus halodurans C-125 BH1494 -110 5.5 TGTAAGAAAATCTAACA
Bacillus clausii KSM-K16 ABC1760 -99 5.5 TGTTAGATTTTCTTACA
-57 5 TGTGATATATTGTTACA
Oceanobacillus iheyensis HTE831 OB1650 -80 5.1 TGTTAGAAATACTAACA
-57 4.3 TGACATATAAGCTGACG
Paenibacillus sp. JDR-2 Pjdr2_5154 -302 5.7 TGTTAGATAATCTAACA
-41 5 TGTTAGAAAACATTACA
Position: -89
Score: 3.4
Sequence: TTATGTAATAACTTACA
Position: 1
Score: 4.3
Sequence: TGGCACATAAAATACCA
Locus tag: BPUM_1615
BPUM_1615 -89 3.4 TTATGTAATAACTTACA
1 4.3 TGGCACATAAAATACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rapJ
Ortholog function: Response regulator aspartate phosphatase I (EC 3.1.-.-)
Bacillus subtilis subsp. subtilis str. 168 BSU02820 -48 4.4 TATGATAAAATATAACA
Bacillus amyloliquefaciens FZB42 RBAM_003080 -48 4.4 TATGATAAAATATAACA
Bacillus pumilus SAFR-032 BPUM_1615 -89 3.4 TTATGTAATAACTTACA
Bacillus licheniformis DSM 13 BLi03446 -107 4.1 TGTGAAAAATTATTACT
Position: -59
Score: 5.1
Sequence: TGACATATAATATAACA
Locus tag: BPUM_1636
BPUM_1636 -59 5.1 TGACATATAATATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnR
Ortholog function: Transcriptional regulator of nitrogen excess response, MerR family
Bacillus subtilis subsp. subtilis str. 168 BSU17450 -82 4.3 TGTTAAGAATCCTTACA
-59 5 TGACACATAATATAACA
Bacillus amyloliquefaciens FZB42 RBAM_017250 -82 4.3 TGTTAAGATTCCTTACA
-59 4.9 TGACACAAAATATAACA
Bacillus pumilus SAFR-032 BPUM_1636 -82 4.4 TGTTAATATTCCTAACA
-59 5.1 TGACATATAATATAACA
-54 4.2 TATAATATAACATGACA
Bacillus licheniformis DSM 13 BLi01992 -81 4.2 TGTAAAGAATCCTTACA
-58 5 TGACACATTATATAACA
Anoxybacillus flavithermus WK1 Aflv_1508 -82 4.7 TGTGATAAAATGTAACG
-59 4.3 TGACATATAAGTTAACA
Position: -54
Score: 4.6
Sequence: TGTGAGATTTTATTACT
Locus tag: BPUM_1814
BPUM_1814 -54 4.6 TGTGAGATTTTATTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltA
Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Bacillus subtilis subsp. subtilis str. 168 BSU18450 -51 5 TGTTAGATTTTATGACC
Bacillus amyloliquefaciens FZB42 RBAM_018620 -52 5 TGTCAGATTTTATGACC
Bacillus pumilus SAFR-032 BPUM_1814 -54 4.6 TGTGAGATTTTATTACT
Bacillus licheniformis DSM 13 BLi02162 -54 4.9 TGTAAGATTTTATGACC
Position: -116
Score: 4.6
Sequence: AGTAATAAAATCTCACA
Locus tag: BPUM_1815
BPUM_1815 -116 4.6 AGTAATAAAATCTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltC
Ortholog function: Transcriptional regulator of glutamate biosynthesis (LysR family)
Bacillus subtilis subsp. subtilis str. 168 BSU18460 -112 5 GGTCATAAAATCTAACA
Bacillus amyloliquefaciens FZB42 RBAM_018630 -110 5 GGTCATAAAATCTGACA
Bacillus pumilus SAFR-032 BPUM_1815 -116 4.6 AGTAATAAAATCTCACA
Bacillus licheniformis DSM 13 BLi02163 -111 4.9 GGTCATAAAATCTTACA
Position: -59
Score: 4.9
Sequence: TGTGATCTAATCTGACA
Locus tag: BPUM_1877
BPUM_1877 -59 4.9 TGTGATCTAATCTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhjC
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU19579 -61 4.8 TGTGATCTTTTCTTACA
Bacillus pumilus SAFR-032 BPUM_1877 -59 4.9 TGTGATCTAATCTGACA
1 4 TGCAAGGAAATTTGACA
Bacillus licheniformis DSM 13 BLi02277 -62 4.9 TGTGATTAAATCTGACA
Position: -162
Score: 5
Sequence: GGTCAGATTTTATGACA
Locus tag: BPUM_1922
BPUM_1922 -162 5 GGTCAGATTTTATGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvD
Ortholog function: Dihydroxy-acid dehydratase (EC 4.2.1.9)
Bacillus pumilus SAFR-032 BPUM_1922 -162 5 GGTCAGATTTTATGACA
Bacillus licheniformis DSM 13 BLi02324 -248 4.5 TGTAATAAAATATCACT
Anoxybacillus flavithermus WK1 Aflv_1238 -19 4.1 TGTCATTTTATTTTAAA
1 4.3 TGTTACAATGTTTAACA
Geobacillus kaustophilus HTA426 GK2046 -177 4.9 TGTAAGAAATTATGACG
Position: -134
Score: 5.5
Sequence: TGTCATAAAATCTGACA
Locus tag: BPUM_2261
BPUM_2261 -134 5.5 TGTCATAAAATCTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqzL
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU25289 -135 4.3 TGTGTCATTATCTCACA
Bacillus pumilus SAFR-032 BPUM_2261 -134 5.5 TGTCATAAAATCTGACA
Bacillus halodurans C-125 BH1368 -216 4.4 TGCAAGAAAATGTCACA
Position: -93
Score: 3.8
Sequence: TGTTAAAAATGAATACA
Locus tag: BPUM_2382
BPUM_2382 -93 3.8 TGTTAAAAATGAATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnQ
Ortholog function: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Bacillus subtilis subsp. subtilis str. 168 BSU27430 -28 4 GGTCAAATTTTCTGATA
Bacillus amyloliquefaciens FZB42 RBAM_024530 -123 3.5 TATCAGAAATTACGAAA
Bacillus pumilus SAFR-032 BPUM_2382 -93 3.8 TGTTAAAAATGAATACA
Bacillus clausii KSM-K16 ABC0770 -8 3.4 GGACAGCAATGATCACA
Paenibacillus sp. JDR-2 Pjdr2_2874 -63 4.7 TGTTATCTAACCTAACA
Position: -312
Score: 4.9
Sequence: TGTGAAAAAATATGACA
Locus tag: BPUM_2473
BPUM_2473 -312 4.9 TGTGAAAAAATATGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvE
Ortholog function: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Bacillus pumilus SAFR-032 BPUM_2473 -312 4.9 TGTGAAAAAATATGACA
Bacillus licheniformis DSM 13 BLi02962 -383 4.3 TGGCAAAAAATCTAACC
-339 4.5 CGGGATAAAATCTAACA
Position: 20
Score: 4.5
Sequence: TGACAGATTTTCTTACT
Locus tag: BPUM_2871
BPUM_2871 20 4.5 TGACAGATTTTCTTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yuiA
Ortholog function: Uncharacterized conserved protein contain two CXXC motifs
Bacillus pumilus SAFR-032 BPUM_2871 20 4.5 TGACAGATTTTCTTACT
Bacillus licheniformis DSM 13 BLi03391 -76 4.9 TGTTATATTTTCTGACT
Position: -142
Score: 4.4
Sequence: TGTCATGTTAGTTGACA
Locus tag: BPUM_2903
BPUM_2903 -142 4.4 TGTCATGTTAGTTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pucR
Ortholog function: Transcriptional regulator of the purine degradation operon, PucR family
Bacillus subtilis subsp. subtilis str. 168 BSU32420 -140 5.1 TGTCAGTTTATGTAACA
Bacillus amyloliquefaciens FZB42 RBAM_029510 -146 4.9 TGTCAGTTTTTATCACA
Bacillus pumilus SAFR-032 BPUM_2903 -142 4.4 TGTCATGTTAGTTGACA
Bacillus licheniformis DSM 13 BLi03436 -138 4.6 TGTTATATTTCTTTACA
Position: -64
Score: 4.3
Sequence: TGTTCGTTTATGTGACA
Locus tag: BPUM_3242
BPUM_3242 -64 4.3 TGTTCGTTTATGTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ysnE
Ortholog function: GNAT family acetyltransferase
Bacillus subtilis subsp. subtilis str. 168 BSU28330 -141 5.1 TGGAAGATTTTATAACA
-97 4 TGACAGATCATCTTGCA
Bacillus amyloliquefaciens FZB42 RBAM_035380 -210 4.1 TTGAACATTTTGTTACA
-85 4.3 TGTCACATTTCCGGACA
Bacillus pumilus SAFR-032 BPUM_3242 -64 4.3 TGTTCGTTTATGTGACA
Bacillus halodurans C-125 BH1073 -87 5.1 CGTCATAAAATCTAACA
Position: -106
Score: 4.9
Sequence: TGAAAGATTATGTTACA
Locus tag: BPUM_3259
BPUM_3259 -106 4.9 TGAAAGATTATGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: capB
Ortholog function: Poly-gamma-glutamate synthase subunit (EC 6.3.2.-)
Bacillus subtilis subsp. subtilis str. 168 BSU35900 -98 4.4 GGGAAGATTATGTTACA
Bacillus pumilus SAFR-032 BPUM_3259 -106 4.9 TGAAAGATTATGTTACA
Position: -121
Score: 5
Sequence: TGTAAGATATTCTTTCA
Locus tag: BPUM_3499
BPUM_3499 -121 5 TGTAAGATATTCTTTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywoF
Ortholog function: Pectin lyase like protein
Bacillus subtilis subsp. subtilis str. 168 BSU36460 -78 4.3 AGTTATATTAAGTGACA
-66 3.7 TGACATCTAATGTCAAA
-56 4.3 TGTCAAAAAACATAACG
Bacillus pumilus SAFR-032 BPUM_3499 -121 5 TGTAAGATATTCTTTCA
Bacillus licheniformis DSM 13 BLi02095 -225 4.7 TTTTACATTATGTAACA
-215 3.6 TGTAACAAACTTTCAAA
-106 3.7 TTTAATATTTACTGATA
Position: -174
Score: 3.8
Sequence: TATCATATTTTGTGATA
Locus tag: BPUM_3548
BPUM_3548 -174 3.8 TATCATATTTTGTGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Pjdr2_5900
Ortholog function: Asparaginase/glutaminase
Paenibacillus sp. JDR-2 Pjdr2_5900 -34 3.6 GGTTAGTAAACCTGACT
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