Propagation of TnrA regulog to Bacillus pumilus SAFR-032
| Source regulog: | TnrA - Bacillales |
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor (activator) |
| Biological process: | Nitrogen assimilation |
| Effector: | NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Bacillus pumilus SAFR-032 |
| Orthologous TF(s) | BPUM_1230 |
| Regulated genes | 40 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -70
Score: 4.5 Sequence: TGAGATAAAATCTGCCA
Locus tag: BPUM_0239
|
||||
| BPUM_0239 | -70 | 4.5 | TGAGATAAAATCTGCCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydaB | ||||
| Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU04170 | -55 | 4.5 | AGGAAGAAAATCTAACA |
| Bacillus amyloliquefaciens FZB42 | RBAM_004400 | -54 | 4.5 | AGAAAGAAAATCTGACA |
| Bacillus pumilus SAFR-032 | BPUM_0239 | -70 | 4.5 | TGAGATAAAATCTGCCA |
| Bacillus licheniformis DSM 13 | BLi00300 | 3 | 4.3 | CGTCACATAATCTCACC |
|
Position: -183
Score: 3.8 Sequence: TTAAATAAATTCTTTCA
Position: -141
Score: 3.7 Sequence: TGAAAGAATTTTTCATA
Locus tag: BPUM_0343
|
||||
| BPUM_0343 | -183 | 3.8 | TTAAATAAATTCTTTCA | |
| -141 | 3.7 | TGAAAGAATTTTTCATA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yclF | ||||
| Ortholog function: Di-tripeptide-proton ABC symporter | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU03670 | -212 | 3.6 | TCTAAAATTTTATTAAA |
| -175 | 4.9 | TGTAAGAAAATCTCACG | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_003840 | -211 | 3.4 | CTTTAAATTTTATTAAA |
| -174 | 4.9 | AGTCAGATAATATAACA | ||
| Bacillus pumilus SAFR-032 | BPUM_0343 | -183 | 3.8 | TTAAATAAATTCTTTCA |
| -141 | 3.7 | TGAAAGAATTTTTCATA | ||
| Bacillus licheniformis DSM 13 | BLi00449 | -180 | 3.9 | TATTAAAAAATCTTTCA |
| Geobacillus kaustophilus HTA426 | GK2020 | -44 | 3.5 | TGAATTATTATATTAAA |
|
Position: -73
Score: 3.8 Sequence: TGAAAGAATTTATTTAA
Locus tag: BPUM_0344
|
||||
| BPUM_0344 | -73 | 3.8 | TGAAAGAATTTATTTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yclG | ||||
| Ortholog function: Pectate lyase family protein | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU03680 | -121 | 4.9 | CGTGAGATTTTCTTACA |
| Bacillus amyloliquefaciens FZB42 | RBAM_003850 | -121 | 4.9 | TGTTATATTATCTGACT |
| Bacillus pumilus SAFR-032 | BPUM_0344 | -73 | 3.8 | TGAAAGAATTTATTTAA |
| Bacillus licheniformis DSM 13 | BLi00451 | 1 | 3.9 | TGAAAGATTTTTTAATA |
|
Position: -113
Score: 5.5 Sequence: TGTTATATTTTCTAACA
Locus tag: BPUM_0379
|
||||
| BPUM_0379 | -113 | 5.5 | TGTTATATTTTCTAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lamB | ||||
| Ortholog function: Lactam utilization protein LamB | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU04050 | -145 | 4.9 | TGGTAGGTTTTCTGACA |
| -52 | 3.9 | CGGGACAATAAATGACA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_004280 | -137 | 4.9 | TGGTAGGTTTTCTGACA |
| Bacillus pumilus SAFR-032 | BPUM_0379 | -113 | 5.5 | TGTTATATTTTCTAACA |
| Bacillus licheniformis DSM 13 | BLi00498 | -155 | 4.6 | TGTGAGGTTTCCTAACA |
|
Position: -34
Score: 4.7 Sequence: TGTTAAATAATTTCACA
Locus tag: BPUM_1042
|
||||
| BPUM_1042 | -34 | 4.7 | TGTTAAATAATTTCACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argC | ||||
| Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU11190 | -40 | 4.7 | TGTTAAATAATTTCACA |
| 16 | 4.2 | TGTTAGAAGATGGGACA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_011190 | -38 | 4.7 | TGTTAAATAATTTCACA |
| Bacillus pumilus SAFR-032 | BPUM_1042 | -34 | 4.7 | TGTTAAATAATTTCACA |
| Bacillus licheniformis DSM 13 | BLi01206 | -40 | 4.7 | TGTTAAATAATTTCACA |
|
Position: -82
Score: 4.1 Sequence: TGAGAGATTTTCTATCG
Locus tag: BPUM_1193
|
||||
| BPUM_1193 | -82 | 4.1 | TGAGAGATTTTCTATCG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ykgA | ||||
| Ortholog function: Arginine deiminase (EC 3.5.3.6) | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_012870 | -86 | 4.4 | GGTTAGATATTCTCTCA |
| -63 | 3.7 | TTTCATTATTCATCACA | ||
| Bacillus pumilus SAFR-032 | BPUM_1193 | -82 | 4.1 | TGAGAGATTTTCTATCG |
| Bacillus licheniformis DSM 13 | BLi01401 | -84 | 4.3 | TGTCAGATTTTCTGGCT |
|
Position: -80
Score: 5.5 Sequence: TGTTATATTTTCTAACA
Locus tag: BPUM_1230
|
||||
| BPUM_1230 | -80 | 5.5 | TGTTATATTTTCTAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tnrA | ||||
| Ortholog function: Transcriptional regulator of nitrogen assimilation, MerR family | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU13310 | -124 | 3.9 | TGTTAATTTTTCTTCCG |
| -81 | 5.5 | TGTTAGAAAATATGACA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_013130 | -124 | 4.1 | TGTCAATTTTTCTGCCG |
| -81 | 4.8 | CGTCAGAAAACCTGACA | ||
| Bacillus pumilus SAFR-032 | BPUM_1230 | -121 | 4 | TGTCAACTTTCCTTCCA |
| -80 | 5.5 | TGTTATATTTTCTAACA | ||
| Bacillus licheniformis DSM 13 | BLi01490 | -124 | 3.8 | TGTAAACTTTTCTTCCG |
| -81 | 5.6 | TGTTAGATTTTCTGACA | ||
| Anoxybacillus flavithermus WK1 | Aflv_1544 | -113 | 4.9 | TGTTACTTTTTATAACA |
| -82 | 4.9 | TGTTACTTTTTATAACA | ||
| -27 | 5.4 | TGTTATAAAATATGACA | ||
| Geobacillus kaustophilus HTA426 | GK1860 | -86 | 3.9 | TGTTAATTTTATTTACA |
| -33 | 4.6 | CGTTAGAAAATATAACG | ||
| Bacillus halodurans C-125 | BH1494 | -110 | 5.5 | TGTAAGAAAATCTAACA |
| Bacillus clausii KSM-K16 | ABC1760 | -99 | 5.5 | TGTTAGATTTTCTTACA |
| -57 | 5 | TGTGATATATTGTTACA | ||
| Oceanobacillus iheyensis HTE831 | OB1650 | -80 | 5.1 | TGTTAGAAATACTAACA |
| -57 | 4.3 | TGACATATAAGCTGACG | ||
| Paenibacillus sp. JDR-2 | Pjdr2_5154 | -302 | 5.7 | TGTTAGATAATCTAACA |
| -41 | 5 | TGTTAGAAAACATTACA | ||
|
Position: -89
Score: 3.4 Sequence: TTATGTAATAACTTACA
Position: 1
Score: 4.3 Sequence: TGGCACATAAAATACCA
Locus tag: BPUM_1615
|
||||
| BPUM_1615 | -89 | 3.4 | TTATGTAATAACTTACA | |
| 1 | 4.3 | TGGCACATAAAATACCA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rapJ | ||||
| Ortholog function: Response regulator aspartate phosphatase I (EC 3.1.-.-) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU02820 | -48 | 4.4 | TATGATAAAATATAACA |
| Bacillus amyloliquefaciens FZB42 | RBAM_003080 | -48 | 4.4 | TATGATAAAATATAACA |
| Bacillus pumilus SAFR-032 | BPUM_1615 | -89 | 3.4 | TTATGTAATAACTTACA |
| Bacillus licheniformis DSM 13 | BLi03446 | -107 | 4.1 | TGTGAAAAATTATTACT |
|
Position: -59
Score: 5.1 Sequence: TGACATATAATATAACA
Locus tag: BPUM_1636
|
||||
| BPUM_1636 | -59 | 5.1 | TGACATATAATATAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnR | ||||
| Ortholog function: Transcriptional regulator of nitrogen excess response, MerR family | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU17450 | -82 | 4.3 | TGTTAAGAATCCTTACA |
| -59 | 5 | TGACACATAATATAACA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_017250 | -82 | 4.3 | TGTTAAGATTCCTTACA |
| -59 | 4.9 | TGACACAAAATATAACA | ||
| Bacillus pumilus SAFR-032 | BPUM_1636 | -82 | 4.4 | TGTTAATATTCCTAACA |
| -59 | 5.1 | TGACATATAATATAACA | ||
| -54 | 4.2 | TATAATATAACATGACA | ||
| Bacillus licheniformis DSM 13 | BLi01992 | -81 | 4.2 | TGTAAAGAATCCTTACA |
| -58 | 5 | TGACACATTATATAACA | ||
| Anoxybacillus flavithermus WK1 | Aflv_1508 | -82 | 4.7 | TGTGATAAAATGTAACG |
| -59 | 4.3 | TGACATATAAGTTAACA | ||
|
Position: -54
Score: 4.6 Sequence: TGTGAGATTTTATTACT
Locus tag: BPUM_1814
|
||||
| BPUM_1814 | -54 | 4.6 | TGTGAGATTTTATTACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltA | ||||
| Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU18450 | -51 | 5 | TGTTAGATTTTATGACC |
| Bacillus amyloliquefaciens FZB42 | RBAM_018620 | -52 | 5 | TGTCAGATTTTATGACC |
| Bacillus pumilus SAFR-032 | BPUM_1814 | -54 | 4.6 | TGTGAGATTTTATTACT |
| Bacillus licheniformis DSM 13 | BLi02162 | -54 | 4.9 | TGTAAGATTTTATGACC |
|
Position: -116
Score: 4.6 Sequence: AGTAATAAAATCTCACA
Locus tag: BPUM_1815
|
||||
| BPUM_1815 | -116 | 4.6 | AGTAATAAAATCTCACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltC | ||||
| Ortholog function: Transcriptional regulator of glutamate biosynthesis (LysR family) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU18460 | -112 | 5 | GGTCATAAAATCTAACA |
| Bacillus amyloliquefaciens FZB42 | RBAM_018630 | -110 | 5 | GGTCATAAAATCTGACA |
| Bacillus pumilus SAFR-032 | BPUM_1815 | -116 | 4.6 | AGTAATAAAATCTCACA |
| Bacillus licheniformis DSM 13 | BLi02163 | -111 | 4.9 | GGTCATAAAATCTTACA |
|
Position: -59
Score: 4.9 Sequence: TGTGATCTAATCTGACA
Locus tag: BPUM_1877
|
||||
| BPUM_1877 | -59 | 4.9 | TGTGATCTAATCTGACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhjC | ||||
| Ortholog function: Hypothetical protein | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU19579 | -61 | 4.8 | TGTGATCTTTTCTTACA |
| Bacillus pumilus SAFR-032 | BPUM_1877 | -59 | 4.9 | TGTGATCTAATCTGACA |
| 1 | 4 | TGCAAGGAAATTTGACA | ||
| Bacillus licheniformis DSM 13 | BLi02277 | -62 | 4.9 | TGTGATTAAATCTGACA |
|
Position: -162
Score: 5 Sequence: GGTCAGATTTTATGACA
Locus tag: BPUM_1922
|
||||
| BPUM_1922 | -162 | 5 | GGTCAGATTTTATGACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ilvD | ||||
| Ortholog function: Dihydroxy-acid dehydratase (EC 4.2.1.9) | ||||
| Bacillus pumilus SAFR-032 | BPUM_1922 | -162 | 5 | GGTCAGATTTTATGACA |
| Bacillus licheniformis DSM 13 | BLi02324 | -248 | 4.5 | TGTAATAAAATATCACT |
| Anoxybacillus flavithermus WK1 | Aflv_1238 | -19 | 4.1 | TGTCATTTTATTTTAAA |
| 1 | 4.3 | TGTTACAATGTTTAACA | ||
| Geobacillus kaustophilus HTA426 | GK2046 | -177 | 4.9 | TGTAAGAAATTATGACG |
|
Position: -134
Score: 5.5 Sequence: TGTCATAAAATCTGACA
Locus tag: BPUM_2261
|
||||
| BPUM_2261 | -134 | 5.5 | TGTCATAAAATCTGACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yqzL | ||||
| Ortholog function: Hypothetical protein | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU25289 | -135 | 4.3 | TGTGTCATTATCTCACA |
| Bacillus pumilus SAFR-032 | BPUM_2261 | -134 | 5.5 | TGTCATAAAATCTGACA |
| Bacillus halodurans C-125 | BH1368 | -216 | 4.4 | TGCAAGAAAATGTCACA |
|
Position: -93
Score: 3.8 Sequence: TGTTAAAAATGAATACA
Locus tag: BPUM_2382
|
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| BPUM_2382 | -93 | 3.8 | TGTTAAAAATGAATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnQ | ||||
| Ortholog function: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU27430 | -28 | 4 | GGTCAAATTTTCTGATA |
| Bacillus amyloliquefaciens FZB42 | RBAM_024530 | -123 | 3.5 | TATCAGAAATTACGAAA |
| Bacillus pumilus SAFR-032 | BPUM_2382 | -93 | 3.8 | TGTTAAAAATGAATACA |
| Bacillus clausii KSM-K16 | ABC0770 | -8 | 3.4 | GGACAGCAATGATCACA |
| Paenibacillus sp. JDR-2 | Pjdr2_2874 | -63 | 4.7 | TGTTATCTAACCTAACA |
|
Position: -312
Score: 4.9 Sequence: TGTGAAAAAATATGACA
Locus tag: BPUM_2473
|
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| BPUM_2473 | -312 | 4.9 | TGTGAAAAAATATGACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ilvE | ||||
| Ortholog function: Branched-chain amino acid aminotransferase (EC 2.6.1.42) | ||||
| Bacillus pumilus SAFR-032 | BPUM_2473 | -312 | 4.9 | TGTGAAAAAATATGACA |
| Bacillus licheniformis DSM 13 | BLi02962 | -383 | 4.3 | TGGCAAAAAATCTAACC |
| -339 | 4.5 | CGGGATAAAATCTAACA | ||
|
Position: 20
Score: 4.5 Sequence: TGACAGATTTTCTTACT
Locus tag: BPUM_2871
|
||||
| BPUM_2871 | 20 | 4.5 | TGACAGATTTTCTTACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yuiA | ||||
| Ortholog function: Uncharacterized conserved protein contain two CXXC motifs | ||||
| Bacillus pumilus SAFR-032 | BPUM_2871 | 20 | 4.5 | TGACAGATTTTCTTACT |
| Bacillus licheniformis DSM 13 | BLi03391 | -76 | 4.9 | TGTTATATTTTCTGACT |
|
Position: -142
Score: 4.4 Sequence: TGTCATGTTAGTTGACA
Locus tag: BPUM_2903
|
||||
| BPUM_2903 | -142 | 4.4 | TGTCATGTTAGTTGACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pucR | ||||
| Ortholog function: Transcriptional regulator of the purine degradation operon, PucR family | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU32420 | -140 | 5.1 | TGTCAGTTTATGTAACA |
| Bacillus amyloliquefaciens FZB42 | RBAM_029510 | -146 | 4.9 | TGTCAGTTTTTATCACA |
| Bacillus pumilus SAFR-032 | BPUM_2903 | -142 | 4.4 | TGTCATGTTAGTTGACA |
| Bacillus licheniformis DSM 13 | BLi03436 | -138 | 4.6 | TGTTATATTTCTTTACA |
|
Position: -64
Score: 4.3 Sequence: TGTTCGTTTATGTGACA
Locus tag: BPUM_3242
|
||||
| BPUM_3242 | -64 | 4.3 | TGTTCGTTTATGTGACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ysnE | ||||
| Ortholog function: GNAT family acetyltransferase | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU28330 | -141 | 5.1 | TGGAAGATTTTATAACA |
| -97 | 4 | TGACAGATCATCTTGCA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_035380 | -210 | 4.1 | TTGAACATTTTGTTACA |
| -85 | 4.3 | TGTCACATTTCCGGACA | ||
| Bacillus pumilus SAFR-032 | BPUM_3242 | -64 | 4.3 | TGTTCGTTTATGTGACA |
| Bacillus halodurans C-125 | BH1073 | -87 | 5.1 | CGTCATAAAATCTAACA |
|
Position: -106
Score: 4.9 Sequence: TGAAAGATTATGTTACA
Locus tag: BPUM_3259
|
||||
| BPUM_3259 | -106 | 4.9 | TGAAAGATTATGTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: capB | ||||
| Ortholog function: Poly-gamma-glutamate synthase subunit (EC 6.3.2.-) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU35900 | -98 | 4.4 | GGGAAGATTATGTTACA |
| Bacillus pumilus SAFR-032 | BPUM_3259 | -106 | 4.9 | TGAAAGATTATGTTACA |
|
Position: -121
Score: 5 Sequence: TGTAAGATATTCTTTCA
Locus tag: BPUM_3499
|
||||
| BPUM_3499 | -121 | 5 | TGTAAGATATTCTTTCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ywoF | ||||
| Ortholog function: Pectin lyase like protein | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU36460 | -78 | 4.3 | AGTTATATTAAGTGACA |
| -66 | 3.7 | TGACATCTAATGTCAAA | ||
| -56 | 4.3 | TGTCAAAAAACATAACG | ||
| Bacillus pumilus SAFR-032 | BPUM_3499 | -121 | 5 | TGTAAGATATTCTTTCA |
| Bacillus licheniformis DSM 13 | BLi02095 | -225 | 4.7 | TTTTACATTATGTAACA |
| -215 | 3.6 | TGTAACAAACTTTCAAA | ||
| -106 | 3.7 | TTTAATATTTACTGATA | ||
|
Position: -174
Score: 3.8 Sequence: TATCATATTTTGTGATA
Locus tag: BPUM_3548
|
||||
| BPUM_3548 | -174 | 3.8 | TATCATATTTTGTGATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Pjdr2_5900 | ||||
| Ortholog function: Asparaginase/glutaminase | ||||
| Paenibacillus sp. JDR-2 | Pjdr2_5900 | -34 | 3.6 | GGTTAGTAAACCTGACT |