Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of HcpR regulog to Desulfovibrio magneticus RS-1

Reference regulog properties
Source regulog: HcpR - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode:
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Proteobacteria/delta
Propagated regulon:
Target genome Desulfovibrio magneticus RS-1
Orthologous TF(s) DMR_35320
Regulated genes 4
Built upon 25 sites [see more]
Predicted regulatory interactions in Desulfovibrio magneticus RS-1
Locus tag Position Score Sequence
Position: -64
Score: 5
Sequence: ATTTGACTTAGGTCATGT
Locus tag: DMR_12610
DMR_12610 -64 5 ATTTGACTTAGGTCATGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DMR_12610
Ortholog function: hypothetical protein
Desulfovibrio magneticus RS-1 DMR_12610 -64 5 ATTTGACTTAGGTCATGT
Position: -41
Score: 5.3
Sequence: CCTTGACTTACGTCAAGC
Locus tag: DMR_35320
DMR_35320 -41 5.3 CCTTGACTTACGTCAAGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcpR
Ortholog function: Nitric oxide-resposive transcriptional regulator HcpR, Crp family
Desulfovibrio salexigens DSM 2638 Desal_2853 -51 3.9 CCCTGACTTAAGTCATTT
Desulfovibrio magneticus RS-1 DMR_35320 -41 5.3 CCTTGACTTACGTCAAGC
Position: -93
Score: 5.3
Sequence: GCTTGACGTAAGTCAAGG
Locus tag: DMR_35330
DMR_35330 -93 5.3 GCTTGACGTAAGTCAAGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU1080
Ortholog function: nitrite and sulphite reductase 4Fe-4S region
Desulfovibrio vulgaris Hildenborough DVU1080 -234 4.4 GTGTGACCCGCGTCACAG
Desulfovibrio desulfuricans G20 Dde_2390 -80 4.5 ATGTGACCTGCATCACAG
Desulfovibrio salexigens DSM 2638 Desal_2852 -77 4 AAATGACTTAAGTCAGGG
Desulfovibrio magneticus RS-1 DMR_35330 -93 5.3 GCTTGACGTAAGTCAAGG
Desulfomicrobium baculatum DSM 4028 Dbac_1379 -52 6.1 TTTTGACCTAGGTCAAGG
Position: -94
Score: 5.8
Sequence: TTTTGACTTAGGTCAAAC
Locus tag: DMR_35370
DMR_35370 -94 5.8 TTTTGACTTAGGTCAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Desulfovibrio vulgaris Hildenborough DVU2543 -184 4.8 ATTTGACGCACGTCACAA
Desulfovibrio vulgaris str. Miyazaki F DvMF_0988 -211 4.7 TTTTGATGTCCGTCACAT
Desulfovibrio desulfuricans G20 Dde_2641 -153 4.6 TTGTGACTCCGGTCACAT
Desulfovibrio salexigens DSM 2638 Desal_2849 -238 5.1 CCTTGACCTGAATCAAAT
-88 5.2 TTTTGATCTGAATCAAAT
Desulfovibrio magneticus RS-1 DMR_35370 -94 5.8 TTTTGACTTAGGTCAAAC
Desulfomicrobium baculatum DSM 4028 Dbac_0596 -94 5.6 TTTTGATCTGCGTCAAAG
Desulfomicrobium baculatum DSM 4028 Dbac_2941 -82 5.5 TTTTGATCCAGCTCAAAG
Desulfohalobium retbaense DSM 5692 Dret_2386 -121 6 TTTTGACTCAGGTCAAAG
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