Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of RpoH regulog to Desulfovibrio magneticus RS-1

Reference regulog properties
Source regulog: RpoH - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: Sigma70
Regulation mode:
Biological process: Heat shock response
Effector: Heat shock
Phylum: Proteobacteria/delta
Propagated regulon:
Target genome Desulfovibrio magneticus RS-1
Orthologous TF(s) DMR_21120
Regulated genes 7
Built upon 20 sites [see more]
Predicted regulatory interactions in Desulfovibrio magneticus RS-1
Locus tag Position Score Sequence
Position: -5
Score: 4.3
Sequence: ATTGTAT-(16)-GGCGAT
Position: -1
Score: 4.2
Sequence: TATGAAG-(12)-GGCGAT
Locus tag: DMR_02720
DMR_02720 -5 4.3 ATTGTAT-(16)-GGCGAT
-1 4.2 TATGAAG-(12)-GGCGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: groES
Ortholog function: Heat shock protein 60 family co-chaperone GroES
Desulfovibrio magneticus RS-1 DMR_02720 -55 3.7 CCGCAAG-(12)-GCCAAT
Position: 21
Score: 5.5
Sequence: CTCGACG-(13)-CCGCAT
Locus tag: DMR_19990
DMR_19990 21 5.5 CTCGACG-(13)-CCGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Dde_0249
Ortholog function: Molybdenum cofactor biosynthesis enzyme
Desulfovibrio desulfuricans G20 Dde_0249 -271 4.3 CCGGAAA-(11)-GCACAT
99 5.2 CCTGACA-(14)-CCCGAA
Position: -134
Score: 5
Sequence: AATGAAA-(14)-CCGCGT
Locus tag: DMR_28170
DMR_28170 -134 5 AATGAAA-(14)-CCGCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpP
Ortholog function: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)
Desulfovibrio desulfuricans G20 Dde_2220 -81 6.6 CTTGAAC-(12)-CCCGAT
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0691 -159 5.4 CCCGAAA-(11)-GCCGAT
Desulfovibrio magneticus RS-1 DMR_28170 -135 5.9 CCTGAAG-(12)-CCGGAT
-77 5.2 CCGGAAG-(11)-CCCGAT
Desulfohalobium retbaense DSM 5692 Dret_0511 -186 4.8 CTGGAAA-(14)-ACTGAT