Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of RpoN regulog to Desulfovibrio piger ATCC 29098

Reference regulog properties
Source regulog: RpoN - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: Sigma54
Regulation mode:
Biological process: Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism
Effector:
Phylum: Proteobacteria
Propagated regulon:
Target genome Desulfovibrio piger ATCC 29098
Orthologous TF(s) DESPIG_00589
Regulated genes 32
Built upon 487 sites [see more]
Predicted regulatory interactions in Desulfovibrio piger ATCC 29098
Locus tag Position Score Sequence
Position: -312
Score: 3.7
Sequence: GCTGGCACGATTTTGGGAC
Position: -266
Score: 3.6
Sequence: GCAGGCCCGGGACTTGTAC
Locus tag: DESPIG_00382
DESPIG_00382 -312 3.7 GCTGGCACGATTTTGGGAC
-266 3.6 GCAGGCCCGGGACTTGTAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU2108
Ortholog function: Dinitrogenase iron-molybdenum cofactor biosynthesis protein
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_1867 -118 3.8 GCAGGGACGCTTTTTGTAT
Desulfovibrio magneticus RS-1 DMR_11260 -42 4.9 TTCGGCACGGTTCCTGCCT
Position: -6
Score: 4.3
Sequence: CTAGGCATGGAACTTGCCA
Locus tag: DESPIG_00684
DESPIG_00684 -6 4.3 CTAGGCATGGAACTTGCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: invX
Ortholog function: Type III secretion inner membrane protein (YscS,homologous to flagellar export components)
Desulfovibrio piger ATCC 29098 DESPIG_00684 -73 4.5 TGTGGCATGATTCTGGCAT
Desulfovibrio vulgaris str. Miyazaki F DvMF_2414 -63 4 CATGGCGTGATTCTCGCAT
Position: -73
Score: 4.5
Sequence: TGTGGCATGATTCTGGCAT
Locus tag: DESPIG_00689
DESPIG_00689 -73 4.5 TGTGGCATGATTCTGGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVUA0106
Ortholog function: Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) / Type III secretion outermembrane negative regulator of secretion (TyeA)
Desulfovibrio piger ATCC 29098 DESPIG_00689 -73 4.5 TGTGGCATGATTCTGGCAT
Desulfovibrio vulgaris Hildenborough DVUA0106 -257 4.5 TCTGGCCCGCTTTTCGCAA
Desulfovibrio vulgaris str. Miyazaki F DvMF_2419 -63 4 CATGGCGTGATTCTCGCAT
Position: -54
Score: 5.2
Sequence: CATGGCACGCTTTATGCTT
Locus tag: DESPIG_00690
DESPIG_00690 -54 5.2 CATGGCACGCTTTATGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DvMF_2420
Ortholog function: hypothetical protein
Desulfovibrio piger ATCC 29098 DESPIG_00690 -54 5.2 CATGGCACGCTTTATGCTT
Desulfovibrio vulgaris Hildenborough DVUA203 -62 4.6 CATGGCATACTTGCTGCTA
Position: 8
Score: 3.6
Sequence: TGCGGCCGGCATGCTGCTG
Position: 12
Score: 3.8
Sequence: GCCGGCATGCTGCTGGCGT
Locus tag: DESPIG_01518
DESPIG_01518 8 3.6 TGCGGCCGGCATGCTGCTG
12 3.8 GCCGGCATGCTGCTGGCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nudF
Ortholog function: ADP-ribose pyrophosphatase (EC 3.6.1.13)
Desulfovibrio desulfuricans G20 Dde_2287 -243 4.9 AATGGCACGCTTGATGCTA
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0750 -76 4.1 TGCGGCCCGGCGCGTGCTG
Desulfovibrio piger ATCC 29098 DESPIG_01518 8 3.6 TGCGGCCGGCATGCTGCTG
Desulfovibrio salexigens DSM 2638 Desal_2793 -380 5 TTTGGCATACCCATTGCTA
Position: -119
Score: 5.4
Sequence: ACTGGCACGCCCCTTGCTC
Locus tag: DESPIG_01831
DESPIG_01831 -119 5.4 ACTGGCACGCCCCTTGCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfH
Ortholog function: Cytochrome c nitrite reductase, small subunit NrfH
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0082 -191 4.2 ACTGGTACGTTTCTTGAAA
Desulfovibrio piger ATCC 29098 DESPIG_01831 -119 5.4 ACTGGCACGCCCCTTGCTC
Desulfovibrio vulgaris Hildenborough DVU0624 -196 4.7 TTCGGCACGCCTTTTGTAA
Desulfovibrio vulgaris str. Miyazaki F DvMF_1491 -146 4.1 AACGGCACGGGTCTTGAAG
Position: -43
Score: 4.1
Sequence: CCTGGTCTATCTTTTGCAA
Locus tag: DESPIG_01879
DESPIG_01879 -43 4.1 CCTGGTCTATCTTTTGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU2392
Ortholog function: Type III secretion chaperone, CesT family
Desulfovibrio piger ATCC 29098 DESPIG_01879 -43 4.1 CCTGGTCTATCTTTTGCAA
Desulfovibrio vulgaris Hildenborough DVU2392 -74 3.9 CAAGGCGTGTTCCTTGCCA
Position: -147
Score: 5.3
Sequence: TATGGCACGCTTGTTGCTG
Locus tag: DESPIG_02139
DESPIG_02139 -147 5.3 TATGGCACGCTTGTTGCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU2280
Ortholog function: cationic amino acid transporter
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0221 -190 4.6 TCTGGAACACTTCTTGTAT
Desulfovibrio piger ATCC 29098 DESPIG_02139 -147 5.3 TATGGCACGCTTGTTGCTG
Desulfovibrio salexigens DSM 2638 Desal_3524 -300 5.1 ATTGGCACCCTGTTTGCTA
Desulfovibrio vulgaris Hildenborough DVU2280 -132 4.8 GCTGGTACGCTTGTTGCTG
Position: -99
Score: 5.1
Sequence: TTTGGCACAGCCTATGCTT
Locus tag: DESPIG_02142
DESPIG_02142 -99 5.1 TTTGGCACAGCCTATGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU2272
Ortholog function: Pyruvate formate-lyase (EC 2.3.1.54)
Desulfovibrio piger ATCC 29098 DESPIG_02142 -99 5.1 TTTGGCACAGCCTATGCTT
Desulfovibrio piger ATCC 29098 DESPIG_02193 -68 5.3 TCTGGCACGGTTCCTGCTG
Desulfovibrio salexigens DSM 2638 Desal_3528 -102 4.9 TCTGGCACAGCCCGTGCTA
Desulfovibrio vulgaris Hildenborough DVU2272 -232 4.5 CGTGGCATGGCTTGTGCAG
Position: -49
Score: 5.1
Sequence: AATGGCATGTTTTTTGCTG
Locus tag: DESPIG_02269
DESPIG_02269 -49 5.1 AATGGCATGTTTTTTGCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU0132
Ortholog function: hypothetical membrane protein
Desulfomicrobium baculatum DSM 4028 Dbac_0315 -85 4.9 GTTGGCATGTGCGTTGCTT
Desulfovibrio magneticus RS-1 DMR_16160 50 5.3 TTTGGCACGGCGTTTGCCT
Desulfovibrio piger ATCC 29098 DESPIG_02269 -49 5.1 AATGGCATGTTTTTTGCTG
Desulfovibrio salexigens DSM 2638 Desal_2192 -88 5 TGTGGCACAGCGTTTGCTC
Desulfovibrio vulgaris Hildenborough DVU0132 -232 5.2 TATGGCACACCCGTTGCTT
Desulfovibrio vulgaris str. Miyazaki F DvMF_1984 -111 5 TTTGGCACAACCGTTGCTA
Position: -57
Score: 5.3
Sequence: ATTGGCACGGACTTTGCTG
Locus tag: DESPIG_02585
DESPIG_02585 -57 5.3 ATTGGCACGGACTTTGCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: DESPIG_02585
Ortholog function: hypothetical protein
Desulfovibrio piger ATCC 29098 DESPIG_02585 -57 5.3 ATTGGCACGGACTTTGCTG
Position: -110
Score: 5.1
Sequence: TTTGGCACGCGGGTTGCTA
Locus tag: DESPIG_02788
DESPIG_02788 -110 5.1 TTTGGCACGCGGGTTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: zraP
Ortholog function: Zinc resistance-associated protein
Desulfovibrio desulfuricans G20 Dde_0111 -78 5.3 TATGGCACGCCTGTTGCTC
Desulfovibrio piger ATCC 29098 DESPIG_02788 -110 5.1 TTTGGCACGCGGGTTGCTA
Position: -80
Score: 4.8
Sequence: AATGGCACAGGCATTGCTA
Locus tag: DESPIG_02849
DESPIG_02849 -80 4.8 AATGGCACAGGCATTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU2824
Ortholog function: Pyruvate formate-lyase (EC 2.3.1.54)
Desulfomicrobium baculatum DSM 4028 Dbac_1587 -156 4.3 ATTGGCACAGAGAATGCTC
Desulfovibrio desulfuricans G20 Dde_1273 -187 4.4 ATTGGAACACGCCTTGCCG
-84 4.7 TTTGGCACATTACCTGCTC
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_1436 -123 4.7 TGTGGCATGCCCCATGCAA
Desulfovibrio piger ATCC 29098 DESPIG_02849 -80 4.8 AATGGCACAGGCATTGCTA
Desulfovibrio vulgaris Hildenborough DVU2824 -91 5.1 TTTGGCACGTTCCCTGCTC
Position: -105
Score: 5.3
Sequence: ATTGGCACGGGTGTTGCTT
Locus tag: DESPIG_02990
DESPIG_02990 -105 5.3 ATTGGCACGGGTGTTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU0150
Ortholog function: hypothetical membrane protein
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_1642 -115 4.9 AATGGCATGGCGATTGCTA
Desulfovibrio magneticus RS-1 DMR_42230 -78 5 GCCGGCACACCCCTTGCTT
Desulfovibrio piger ATCC 29098 DESPIG_02990 -105 5.3 ATTGGCACGGGTGTTGCTT
Desulfovibrio vulgaris Hildenborough DVU0150 -180 5.3 TTTGGCACGGCCATTGCTC
Desulfovibrio vulgaris str. Miyazaki F DvMF_2341 -197 5.2 TTTGGCATGCGGCTTGCTA
© 2009-2020 RegPrecise