Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of RpoN regulog to Desulfovibrio desulfuricans G20

Reference regulog properties
Source regulog: RpoN - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: Sigma54
Regulation mode:
Biological process: Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism
Effector:
Phylum: Proteobacteria
Propagated regulon:
Target genome Desulfovibrio desulfuricans G20
Orthologous TF(s) Dde_1771
Regulated genes 82
Built upon 487 sites [see more]
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

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© 2009-2020 RegPrecise
Predicted regulatory interactions in Desulfovibrio desulfuricans G20
Locus tag Position Score Sequence
Position: -96
Score: 4.7
Sequence: GTTGGCACCGACTCTGCAA
Locus tag: Dde_0102
Dde_0102 -96 4.7 GTTGGCACCGACTCTGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnN
Ortholog function: Glutamine synthetase type III, GlnN (EC 6.3.1.2)
Desulfomicrobium baculatum DSM 4028 Dbac_1496 -89 4.4 TGTGGCATCTGAATTGCTT
Desulfovibrio desulfuricans G20 Dde_0102 -96 4.7 GTTGGCACCGACTCTGCAA
Desulfovibrio salexigens DSM 2638 Desal_2290 -102 5 TACGGCACGCCTCCTGCTT
Desulfovibrio vulgaris Hildenborough DVU1258 -100 5.2 ATTGGCCCGCTCTTTGCTC
Desulfovibrio vulgaris str. Miyazaki F DvMF_1590 -201 4.9 AGTGGACCGCTTCTTGCTT
Position: -57
Score: 4.2
Sequence: ATCGGCACTATGGTTGCTA
Locus tag: Dde_0108
Dde_0108 -57 4.2 ATCGGCACTATGGTTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU3387
Ortholog function: hypothetical protein
Desulfomicrobium baculatum DSM 4028 Dbac_1772 -70 4.4 GCTGGCCCGAAATCTGCTA
Desulfovibrio desulfuricans G20 Dde_0108 -57 4.2 ATCGGCACTATGGTTGCTA
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0311 -61 4.8 CTTGGCACTGTACTTGCTG
Desulfovibrio magneticus RS-1 DMR_05460 -13 4.1 GTCGGCACAAGGGTTGCAA
Desulfovibrio salexigens DSM 2638 Desal_2614 -59 4.3 GTTGGTACGTTTGCTGCAA
Desulfovibrio vulgaris Hildenborough DVU3387 -92 4.1 GCAGGTGCGGTTCTTGCTA
Desulfovibrio vulgaris str. Miyazaki F DvMF_2067 -67 5 GCTGGCATTCCCCTTGCTT
Lawsonia intracellularis PHE/MN1-00 LI0507 -62 3.9 TAAGGCCTAAAATTTGCAT
Position: -208
Score: 4.3
Sequence: TCTGGTGCGTTGCTTGCAT
Locus tag: Dde_0110
Dde_0110 -208 4.3 TCTGGTGCGTTGCTTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: zraS
Ortholog function: Sensor protein of sigma-54-dependent two-component system
Desulfovibrio desulfuricans G20 Dde_0110 -208 4.3 TCTGGTGCGTTGCTTGCAT
Desulfovibrio magneticus RS-1 DMR_19620 -114 4.1 TTTGGAACGGGGGATGCAG
Position: -78
Score: 5.3
Sequence: TATGGCACGCCTGTTGCTC
Locus tag: Dde_0111
Dde_0111 -78 5.3 TATGGCACGCCTGTTGCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: zraP
Ortholog function: Zinc resistance-associated protein
Desulfovibrio desulfuricans G20 Dde_0111 -78 5.3 TATGGCACGCCTGTTGCTC
Desulfovibrio piger ATCC 29098 DESPIG_02788 -110 5.1 TTTGGCACGCGGGTTGCTA
Position: -227
Score: 5.1
Sequence: GTTGGCACGGCAGTTGCTA
Locus tag: Dde_0191
Dde_0191 -227 5.1 GTTGGCACGGCAGTTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Dde_0191
Ortholog function: protein of unknown function DUF355
Desulfovibrio desulfuricans G20 Dde_0191 -227 5.1 GTTGGCACGGCAGTTGCTA
Position: -86
Score: 5.3
Sequence: TCTGGCACGGTCCATGCTT
Locus tag: Dde_0298
Dde_0298 -86 5.3 TCTGGCACGGTCCATGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: flgE
Ortholog function: Flagellar hook protein FlgE
Desulfomicrobium baculatum DSM 4028 Dbac_1614 -84 4.1 CATGGACCCATTCCTGCAT
Desulfovibrio desulfuricans G20 Dde_0298 -86 5.3 TCTGGCACGGTCCATGCTT
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_2091 -76 5.3 TCTGGCACGCTCTCTGCAT
Desulfovibrio salexigens DSM 2638 Desal_2938 -115 5.2 TTAGGCACGCCCCTTGCTT
Desulfovibrio vulgaris Hildenborough DVU0307 -59 5.3 TCTGGCACGGCTCGTGCTT
Desulfovibrio vulgaris str. Miyazaki F DvMF_1808 -128 5.2 GCTGGCACGGCTCGTGCTT
Lawsonia intracellularis PHE/MN1-00 LI0348 -77 5.2 CTTGGCATGGCTTCTGCTT
Position: -187
Score: 5.2
Sequence: GTTGGCACGTTCCTTGCCT
Locus tag: Dde_0323
Dde_0323 -187 5.2 GTTGGCACGTTCCTTGCCT
Supported by regulated orthologs from reference regulons