Propagation of RpoN regulog to Desulfovibrio desulfuricans G20
| Source regulog: | RpoN - Desulfovibrionales |
| Regulator type: | Transcription factor |
| Regulator family: | Sigma54 |
| Regulation mode: | |
| Biological process: | Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism |
| Effector: | |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Desulfovibrio desulfuricans G20 |
| Orthologous TF(s) | Dde_1771 |
| Regulated genes | 82 |
Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -96
Score: 4.7 Sequence: GTTGGCACCGACTCTGCAA
Locus tag: Dde_0102
|
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| Dde_0102 | -96 | 4.7 | GTTGGCACCGACTCTGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnN | ||||
| Ortholog function: Glutamine synthetase type III, GlnN (EC 6.3.1.2) | ||||
| Desulfomicrobium baculatum DSM 4028 | Dbac_1496 | -89 | 4.4 | TGTGGCATCTGAATTGCTT |
| Desulfovibrio desulfuricans G20 | Dde_0102 | -96 | 4.7 | GTTGGCACCGACTCTGCAA |
| Desulfovibrio salexigens DSM 2638 | Desal_2290 | -102 | 5 | TACGGCACGCCTCCTGCTT |
| Desulfovibrio vulgaris Hildenborough | DVU1258 | -100 | 5.2 | ATTGGCCCGCTCTTTGCTC |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1590 | -201 | 4.9 | AGTGGACCGCTTCTTGCTT |
|
Position: -57
Score: 4.2 Sequence: ATCGGCACTATGGTTGCTA
Locus tag: Dde_0108
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| Dde_0108 | -57 | 4.2 | ATCGGCACTATGGTTGCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU3387 | ||||
| Ortholog function: hypothetical protein | ||||
| Desulfomicrobium baculatum DSM 4028 | Dbac_1772 | -70 | 4.4 | GCTGGCCCGAAATCTGCTA |
| Desulfovibrio desulfuricans G20 | Dde_0108 | -57 | 4.2 | ATCGGCACTATGGTTGCTA |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_0311 | -61 | 4.8 | CTTGGCACTGTACTTGCTG |
| Desulfovibrio magneticus RS-1 | DMR_05460 | -13 | 4.1 | GTCGGCACAAGGGTTGCAA |
| Desulfovibrio salexigens DSM 2638 | Desal_2614 | -59 | 4.3 | GTTGGTACGTTTGCTGCAA |
| Desulfovibrio vulgaris Hildenborough | DVU3387 | -92 | 4.1 | GCAGGTGCGGTTCTTGCTA |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2067 | -67 | 5 | GCTGGCATTCCCCTTGCTT |
| Lawsonia intracellularis PHE/MN1-00 | LI0507 | -62 | 3.9 | TAAGGCCTAAAATTTGCAT |
|
Position: -208
Score: 4.3 Sequence: TCTGGTGCGTTGCTTGCAT
Locus tag: Dde_0110
|
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| Dde_0110 | -208 | 4.3 | TCTGGTGCGTTGCTTGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: zraS | ||||
| Ortholog function: Sensor protein of sigma-54-dependent two-component system | ||||
| Desulfovibrio desulfuricans G20 | Dde_0110 | -208 | 4.3 | TCTGGTGCGTTGCTTGCAT |
| Desulfovibrio magneticus RS-1 | DMR_19620 | -114 | 4.1 | TTTGGAACGGGGGATGCAG |
|
Position: -78
Score: 5.3 Sequence: TATGGCACGCCTGTTGCTC
Locus tag: Dde_0111
|
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| Dde_0111 | -78 | 5.3 | TATGGCACGCCTGTTGCTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: zraP | ||||
| Ortholog function: Zinc resistance-associated protein | ||||
| Desulfovibrio desulfuricans G20 | Dde_0111 | -78 | 5.3 | TATGGCACGCCTGTTGCTC |
| Desulfovibrio piger ATCC 29098 | DESPIG_02788 | -110 | 5.1 | TTTGGCACGCGGGTTGCTA |
|
Position: -227
Score: 5.1 Sequence: GTTGGCACGGCAGTTGCTA
Locus tag: Dde_0191
|
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| Dde_0191 | -227 | 5.1 | GTTGGCACGGCAGTTGCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Dde_0191 | ||||
| Ortholog function: protein of unknown function DUF355 | ||||
| Desulfovibrio desulfuricans G20 | Dde_0191 | -227 | 5.1 | GTTGGCACGGCAGTTGCTA |
|
Position: -86
Score: 5.3 Sequence: TCTGGCACGGTCCATGCTT
Locus tag: Dde_0298
|
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| Dde_0298 | -86 | 5.3 | TCTGGCACGGTCCATGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: flgE | ||||
| Ortholog function: Flagellar hook protein FlgE | ||||
| Desulfomicrobium baculatum DSM 4028 | Dbac_1614 | -84 | 4.1 | CATGGACCCATTCCTGCAT |
| Desulfovibrio desulfuricans G20 | Dde_0298 | -86 | 5.3 | TCTGGCACGGTCCATGCTT |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_2091 | -76 | 5.3 | TCTGGCACGCTCTCTGCAT |
| Desulfovibrio salexigens DSM 2638 | Desal_2938 | -115 | 5.2 | TTAGGCACGCCCCTTGCTT |
| Desulfovibrio vulgaris Hildenborough | DVU0307 | -59 | 5.3 | TCTGGCACGGCTCGTGCTT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1808 | -128 | 5.2 | GCTGGCACGGCTCGTGCTT |
| Lawsonia intracellularis PHE/MN1-00 | LI0348 | -77 | 5.2 | CTTGGCATGGCTTCTGCTT |
|
Position: -187
Score: 5.2 Sequence: GTTGGCACGTTCCTTGCCT
Locus tag: Dde_0323
|
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| Dde_0323 | -187 | 5.2 | GTTGGCACGTTCCTTGCCT | |
| Supported by regulated orthologs from reference regulons | ||||