Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Fur regulog to Desulfovibrio desulfuricans G20

Reference regulog properties
Source regulog: Fur - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria/delta
Propagated regulon:
Target genome Desulfovibrio desulfuricans G20
Orthologous TF(s) Dde_2676, Dde_0497
Regulated genes 24
Built upon 193 sites [see more]
Predicted regulatory interactions in Desulfovibrio desulfuricans G20
Locus tag Position Score Sequence
Position: -120
Score: 3.7
Sequence: CTGACTTTCGTCATCAC
Position: 34
Score: 3.6
Sequence: ATGTCATTGAAGTTCTG
Locus tag: Dde_0133
Dde_0133 -120 3.7 CTGACTTTCGTCATCAC
34 3.6 ATGTCATTGAAGTTCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfr
Ortholog function: Bacterioferritin
Desulfovibrio desulfuricans G20 Dde_0133 -120 3.7 CTGACTTTCGTCATCAC
34 3.6 ATGTCATTGAAGTTCTG
Lawsonia intracellularis PHE/MN1-00 LI0660 -313 4.1 GTTATGTTGATATTCAT
-307 4.5 TTGATATTCATTACGAT
-235 4 TTGACGTTTATATTCGT
-105 3.7 ATGATAGTAATCTTTAA
Position: -55
Score: 5.2
Sequence: ATGAAAATAAATTTCAT
Position: -49
Score: 5.1
Sequence: ATAAATTTCATTTTCAT
Locus tag: Dde_0444
Dde_0444 -55 5.2 ATGAAAATAAATTTCAT
-49 5.1 ATAAATTTCATTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pqqL
Ortholog function: peptidase M16 domain protein
Desulfovibrio desulfuricans G20 Dde_0444 -55 5.2 ATGAAAATAAATTTCAT
-49 5.1 ATAAATTTCATTTTCAT
Position: -100
Score: 4.9
Sequence: CTGAAATTGGTTTTCAA
Position: -94
Score: 4.6
Sequence: TTGGTTTTCAATATCAG
Position: -31
Score: 4.9
Sequence: TTGAAAATGAAATTTAT
Position: -25
Score: 4.4
Sequence: ATGAAATTTATAGTCAG
Locus tag: Dde_0483
Dde_0483 -100 4.9 CTGAAATTGGTTTTCAA
-94 4.6 TTGGTTTTCAATATCAG
-31 4.9 TTGAAAATGAAATTTAT
-25 4.4 ATGAAATTTATAGTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: DvMF_2569
Ortholog function: ATPase associated with various cellular activities AAA_3
Desulfovibrio desulfuricans G20 Dde_0483 -100 4.9 CTGAAATTGGTTTTCAA
-94 4.6 TTGGTTTTCAATATCAG
-31 4.9 TTGAAAATGAAATTTAT
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_1729 -80 5.4 ATGACATTGACTTTCAT
-74 5.4 TTGACTTTCATTTTCAC
Desulfovibrio piger ATCC 29098 DESPIG_01861 -38 5.5 TTGAAAATGAAATTCAA
-32 4.7 ATGAAATTCAATTTATT
Desulfovibrio salexigens DSM 2638 Desal_2558 -77 4.5 TCGAAAATCGTTTTCAA
Position: -76
Score: 5.3
Sequence: ATGAAAATAATTTTCAT
Locus tag: Dde_0753
Dde_0753 -76 5.3 ATGAAAATAATTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fur3
Ortholog function: ferric uptake regulation protein
Desulfovibrio desulfuricans G20 Dde_0753 -76 5.3 ATGAAAATAATTTTCAT
Position: -91
Score: 5
Sequence: ACGAAATTCATTATCAT
Locus tag: Dde_1239
Dde_1239 -91 5 ACGAAATTCATTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Dde_1239
Ortholog function: hypothetical protein
Desulfovibrio desulfuricans G20 Dde_1239 -97 3.6 ACAATAACGAAATTCAT
-91 5 ACGAAATTCATTATCAT
-85 3.4 TTCATTATCATAATGTG
-71 3.5 GTGGGTTTCATTGTGAT
Position: -126
Score: 4.7
Sequence: TTGACATCGATTCTCAA
Locus tag: Dde_1312
Dde_1312 -126 4.7 TTGACATCGATTCTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: DvMF_3169
Ortholog function: mercuric transport protein periplasmic component
Desulfovibrio vulgaris str. Miyazaki F DvMF_3169 -90 3.8 TTGAAAGGCGTTCTCAT
Desulfovibrio desulfuricans G20 Dde_1312 -126 4.7 TTGACATCGATTCTCAA
Desulfovibrio salexigens DSM 2638 Desal_1558 -131 3.9 TTGAGAATAATTAGCAG
Position: -179
Score: 5.2
Sequence: ATGATTTTCAATGTCAA
Locus tag: Dde_1609
Dde_1609 -179 5.2 ATGATTTTCAATGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Dde_1609
Ortholog function: amino acid adenylation
Desulfovibrio desulfuricans G20 Dde_1609 -185 4.7 GCGAAAATGATTTTCAA
-179 5.2 ATGATTTTCAATGTCAA
Position: -64
Score: 5.4
Sequence: TTGACATTGAAAATCAT
Locus tag: Dde_1611
Dde_1611 -64 5.4 TTGACATTGAAAATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Ddes_0430
Ortholog function: Transcriptional regulator, AraC family
Desulfovibrio desulfuricans G20 Dde_1611 -122 3.4 CAGAAAATAATATTCTG
-64 5.4 TTGACATTGAAAATCAT
-58 5 TTGAAAATCATTTTCGC
Position: -39
Score: 4.7
Sequence: ATGAGTTTCAGAATCAA
Locus tag: Dde_2152
Dde_2152 -39 4.7 ATGAGTTTCAGAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Dde_2152
Ortholog function: hypothetical protein
Desulfovibrio desulfuricans G20 Dde_2152 -48 4.7 ATGAGTTTCAGAATCAA
-42 4.5 TTCAGAATCAAAATCAA
Desulfovibrio salexigens DSM 2638 Desal_2081 -123 4.5 ATGCAATTGAAATTCAC
-117 5.2 TTGAAATTCACAATCAA
Position: -274
Score: 4.6
Sequence: CTGGTTTTCATTATCAT
Locus tag: Dde_2677
Dde_2677 -274 4.6 CTGGTTTTCATTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pep
Ortholog function: metalloprotease, iron-related
Desulfovibrio desulfuricans G20 Dde_2677 -284 4.6 CTGGTTTTCATTATCAT
-280 4.1 TTCAGACTGGTTTTCAT
Desulfovibrio salexigens DSM 2638 Desal_0032 -223 4.8 TTTAAATTCAAAATCAA
-217 3.8 TTCAAAATCAATATTTA
-136 4.4 ATCATAATCTTTATCAT
Lawsonia intracellularis PHE/MN1-00 LI0650 -270 4.4 TTGAATTTGAAATGCTT
Position: -190
Score: 5.4
Sequence: TTGAAAGTGAATTTCAA
Locus tag: Dde_2805
Dde_2805 -190 5.4 TTGAAAGTGAATTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Dde_2805
Ortholog function: prophage antirepressor-like
Desulfovibrio desulfuricans G20 Dde_2805 -190 5.4 TTGAAAGTGAATTTCAA
-184 4.7 GTGAATTTCAATTACAA
Position: -121
Score: 5.4
Sequence: TTGATTTTGAGTTTCAT
Position: -115
Score: 5.4
Sequence: TTGAGTTTCATATTCAT
Locus tag: Dde_3048
Dde_3048 -121 5.4 TTGATTTTGAGTTTCAT
-115 5.4 TTGAGTTTCATATTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gdp
Ortholog function: diguanylate cyclase
Desulfovibrio desulfuricans G20 Dde_3048 -121 5.4 TTGATTTTGAGTTTCAT
-115 5.4 TTGAGTTTCATATTCAT
Position: -50
Score: 4.6
Sequence: ATGAAATTCTTTATCGA
Locus tag: Dde_3146
Dde_3146 -50 4.6 ATGAAATTCTTTATCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Dde_3146
Ortholog function: hypothetical protein
Desulfovibrio desulfuricans G20 Dde_3146 -105 3.4 ATGAAAATGAATCGTTT
-56 4.2 CTGATGATGAAATTCTT
-50 4.6 ATGAAATTCTTTATCGA
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