Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of RpoH regulog to Desulfovibrio desulfuricans G20

Reference regulog properties
Source regulog: RpoH - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: Sigma70
Regulation mode:
Biological process: Heat shock response
Effector: Heat shock
Phylum: Proteobacteria/delta
Propagated regulon:
Target genome Desulfovibrio desulfuricans G20
Orthologous TF(s) Dde_2116
Regulated genes 4
Built upon 20 sites [see more]
Predicted regulatory interactions in Desulfovibrio desulfuricans G20
Locus tag Position Score Sequence
Position: -154
Score: 5
Sequence: GTTGCAA-(13)-CCGCTT
Position: -81
Score: 6.6
Sequence: CTTGAAC-(12)-CCCGAT
Locus tag: Dde_2220
Dde_2220 -154 5 GTTGCAA-(13)-CCGCTT
-81 6.6 CTTGAAC-(12)-CCCGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpP
Ortholog function: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)
Desulfovibrio desulfuricans G20 Dde_2220 -81 6.6 CTTGAAC-(12)-CCCGAT
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0691 -159 5.4 CCCGAAA-(11)-GCCGAT
Desulfovibrio magneticus RS-1 DMR_28170 -135 5.9 CCTGAAG-(12)-CCGGAT
-77 5.2 CCGGAAG-(11)-CCCGAT
Desulfohalobium retbaense DSM 5692 Dret_0511 -186 4.8 CTGGAAA-(14)-ACTGAT