Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of RpoN regulog to Desulfomicrobium baculatum DSM 4028

Reference regulog properties
Source regulog: RpoN - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: Sigma54
Regulation mode:
Biological process: Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism
Effector:
Phylum: Proteobacteria
Propagated regulon:
Target genome Desulfomicrobium baculatum DSM 4028
Orthologous TF(s) Dbac_0150
Regulated genes 65
Built upon 487 sites [see more]
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

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© 2009-2020 RegPrecise
Predicted regulatory interactions in Desulfomicrobium baculatum DSM 4028
Locus tag Position Score Sequence
Position: -45
Score: 4.1
Sequence: ATGGGTACCAATCTTGCTT
Locus tag: Dbac_0116
Dbac_0116 -45 4.1 ATGGGTACCAATCTTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Dde_0438
Ortholog function: UDP-N-acetylglucosamine pyrophosphorylase related protein
Desulfomicrobium baculatum DSM 4028 Dbac_0116 -45 4.1 ATGGGTACCAATCTTGCTT
Desulfovibrio desulfuricans G20 Dde_0438 -73 5.1 CGTGGCATGCAACTTGCTT
Desulfovibrio salexigens DSM 2638 Desal_0580 -97 4.3 TTTGGCACCCAAATTGAAT
Desulfovibrio vulgaris str. Miyazaki F DvMF_1841 -253 4.4 GCTTGCACACTACTTGCAT
Position: -46
Score: 4.6
Sequence: CTTGGTATCTATCTTGCTT
Locus tag: Dbac_0245
Dbac_0245 -46 4.6 CTTGGTATCTATCTTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU0858
Ortholog function: lipoprotein, putative
Desulfomicrobium baculatum DSM 4028 Dbac_0245 -46 4.6 CTTGGTATCTATCTTGCTT
Desulfovibrio desulfuricans G20 Dde_2573 -132 4.2 CATGGCCCTTCTTTTGCCG
-65 4.3 CACGGCACTCAATTTGCAT
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0596 -177 4.9 TTTGGCACGTTTCTGGCAT
-148 4.3 AATGGCACACACTGTGCCG
-54 4 GTTGGCAAGGTGAATGCCA
Desulfovibrio salexigens DSM 2638 Desal_1243 -38 4.6 TACGGCACAAATATTGCTT
Desulfovibrio vulgaris Hildenborough DVU0858 -79 5 TCCGGCATCGTTCTTGCTT
Desulfovibrio vulgaris str. Miyazaki F DvMF_2906 -127 4.7 TACGGCACCATTCTTGCTG
Position: -85
Score: 4.9
Sequence: GTTGGCATGTGCGTTGCTT
Locus tag: Dbac_0313
Dbac_0313 -85 4.9 GTTGGCATGTGCGTTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Dbac_0313
Ortholog function: response regulator receiver protein
Desulfomicrobium baculatum DSM 4028 Dbac_0313 -85 4.9 GTTGGCATGTGCGTTGCTT
Desulfovibrio salexigens DSM 2638 Desal_2195 -88 5 TGTGGCACAGCGTTTGCTC
Position: -96
Score: 5
Sequence: CATGGCACCGCATTTGCTT
Locus tag: Dbac_0448
Dbac_0448 -96 5 CATGGCACCGCATTTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Dbac_1530
Ortholog function: Protein of unknown function CGGC region
Desulfomicrobium baculatum DSM 4028 Dbac_0448 -96 5 CATGGCACCGCATTTGCTT
Position: -44
Score: 4.8
Sequence: TCTGGCATGGGATCTGCTT
Locus tag: Dbac_0547
Dbac_0547 -44 4.8 TCTGGCATGGGATCTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Dbac_0547
Ortholog function: hypothetical protein
Desulfomicrobium baculatum DSM 4028 Dbac_0547 -44 4.8 TCTGGCATGGGATCTGCTT
Desulfovibrio magneticus RS-1 DMR_11080 -29 4.9 TCTGGACCGGTATTTGCTT
Desulfovibrio salexigens DSM 2638 Desal_0449 -58 4.5 TTTGGCATCAATAATGCTT
Position: -29
Score: 4.7
Sequence: TGCGGCATCCTTGTTGCTT
Locus tag: Dbac_0594
Dbac_0594 -29 4.7 TGCGGCATCCTTGTTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifA-2
Ortholog function: transcriptional regulator, NifA subfamily, Fis Family
Desulfomicrobium baculatum DSM 4028 Dbac_0594 -29 4.7 TGCGGCATCCTTGTTGCTT
Desulfovibrio vulgaris Hildenborough DVUA0143 -29 4.7 CGAGGCACGGCTATTGCTT
Position: -57
Score: 4.2
Sequence: CGTGGCATCGACCATGCAA
Locus tag: Dbac_0833
Dbac_0833 -57 4.2 CGTGGCATCGACCATGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifV
Ortholog function: Pyruvate carboxyltransferase
Desulfomicrobium baculatum DSM 4028 Dbac_0833 -57 4.2 CGTGGCATCGACCATGCAA
Desulfovibrio salexigens DSM 2638 Desal_0448 -58 4.5 TTTGGCATCAATAATGCTT
Desulfovibrio vulgaris Hildenborough DVUA0016 26 4.3 CTTGGCATCGGGTCTGCAA
Desulfovibrio vulgaris str. Miyazaki F DvMF_2612 -117 4.2 GTTGGCATCGGCGATGCAT
Position: -81
Score: 5.1
Sequence: TTTGGCACGCCCGTTGCCC
Locus tag: Dbac_0834
Dbac_0834 -81 5.1 TTTGGCACGCCCGTTGCCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifH
Ortholog function: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Desulfomicrobium baculatum DSM 4028 Dbac_0834 -81 5.1 TTTGGCACGCCCGTTGCCC
Desulfovibrio magneticus RS-1 DMR_20560 -60 5 ACTGGCATGACTCTTGCCT
Desulfovibrio salexigens DSM 2638 Desal_0447 -69 5.1 TTTGGCACACCACTTGCCT
Desulfovibrio vulgaris Hildenborough DVUA0015 -326 4.7 CATGGCACATCCCTTGCCC
Desulfovibrio vulgaris str. Miyazaki F DvMF_2613 -110 4.8 ACTGGCACGGGGTTTGCCC
Position: -149
Score: 4.4
Sequence: TATGGCACTAAATCTGCTT
Locus tag: Dbac_0848
Dbac_0848 -149 4.4 TATGGCACTAAATCTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hdrC
Ortholog function: CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1)
Desulfohalobium retbaense DSM 5692 Dret_0198 -95 4.9 TTTGGCCCGATATTTGCTC
Desulfomicrobium baculatum DSM 4028 Dbac_0848 -149 4.4 TATGGCACTAAATCTGCTT
Desulfovibrio desulfuricans G20 Dde_3524 -98 5.1 TTTGGCCCGTTCCTTGCCT
Desulfovibrio vulgaris Hildenborough DVU2404 -99 5.1 TTTGGCCCCTTCCTTGCTT
Position: -63
Score: 4.8
Sequence: TCTGGCACGGCACTTGATA
Locus tag: Dbac_1014
Dbac_1014 -63 4.8 TCTGGCACGGCACTTGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: zraP
Ortholog function: Zinc resistance-associated protein
Desulfomicrobium baculatum DSM 4028 Dbac_1014 -63 4.8 TCTGGCACGGCACTTGATA
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0185 -134 4.3 AGTTGCATGATTTTTGCAA
Desulfovibrio piger ATCC 29098 DESPIG_02787 -128 4.4 GCTTGCATGTTTTTTGCAA
Position: -91
Score: 4.3
Sequence: AGTGGCACAAAACTTGTTT
Locus tag: Dbac_1044
Dbac_1044 -91 4.3 AGTGGCACAAAACTTGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: por
Ortholog function: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Desulfohalobium retbaense DSM 5692 Dret_1036 -90 4.5 TATGGCATGGATATTGAAT
Desulfomicrobium baculatum DSM 4028 Dbac_1044 -91 4.3 AGTGGCACAAAACTTGTTT
Desulfovibrio desulfuricans G20 Dde_3237 -163 4.8 CATGGCATACTTTTTGTTT
Desulfovibrio vulgaris Hildenborough DVU3025 -153 4.8 ATTGGCACATTTCTTGTTA
Desulfovibrio vulgaris str. Miyazaki F DvMF_1860 -368 4.8 ACTGGCACACTTCTTGTTG
Position: -61
Score: 4.7
Sequence: ACTGGCATGATCTCTGCTC
Locus tag: Dbac_1225
Dbac_1225 -61 4.7 ACTGGCATGATCTCTGCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pspA
Ortholog function: Phage shock protein A
Desulfomicrobium baculatum DSM 4028 Dbac_1225 -61 4.7 ACTGGCATGATCTCTGCTC
Desulfovibrio desulfuricans G20 Dde_3226 -49 4.4 TCTGGCATAGAAGGTGCTT
Desulfovibrio magneticus RS-1 DMR_38330 -60 5.4 TCTGGCACGCTCCCTGCTT
Desulfovibrio vulgaris Hildenborough DVU2988 -46 4.7 CCCGGCACGCTTCGTGCTG
Desulfovibrio vulgaris str. Miyazaki F DvMF_1799 -60 5.1 GCTGGCACGGTTGCTGCTT
Position: -89
Score: 4.4
Sequence: TGTGGCATCTGAATTGCTT
Locus tag: Dbac_1496
Dbac_1496 -89 4.4 TGTGGCATCTGAATTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnN
Ortholog function: Glutamine synthetase type III, GlnN (EC 6.3.1.2)
Desulfomicrobium baculatum DSM 4028 Dbac_1496 -89 4.4 TGTGGCATCTGAATTGCTT
Desulfovibrio desulfuricans G20 Dde_0102 -96 4.7 GTTGGCACCGACTCTGCAA
Desulfovibrio salexigens DSM 2638 Desal_2290 -102 5 TACGGCACGCCTCCTGCTT
Desulfovibrio vulgaris Hildenborough DVU1258 -100 5.2 ATTGGCCCGCTCTTTGCTC
Desulfovibrio vulgaris str. Miyazaki F DvMF_1590 -201 4.9 AGTGGACCGCTTCTTGCTT
Position: -156
Score: 4.3
Sequence: ATTGGCACAGAGAATGCTC
Locus tag: Dbac_1587
Dbac_1587 -156 4.3 ATTGGCACAGAGAATGCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU2824
Ortholog function: Pyruvate formate-lyase (EC 2.3.1.54)
Desulfomicrobium baculatum DSM 4028 Dbac_1587 -156 4.3 ATTGGCACAGAGAATGCTC
Desulfovibrio desulfuricans G20 Dde_1273 -187 4.4 ATTGGAACACGCCTTGCCG
-84 4.7 TTTGGCACATTACCTGCTC
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_1436 -123 4.7 TGTGGCATGCCCCATGCAA
Desulfovibrio piger ATCC 29098 DESPIG_02849 -80 4.8 AATGGCACAGGCATTGCTA
Desulfovibrio vulgaris Hildenborough DVU2824 -91 5.1 TTTGGCACGTTCCCTGCTC
Position: -109
Score: 4.9
Sequence: GATGGCATGCATTCTGCTC
Locus tag: Dbac_1588
Dbac_1588 -109 4.9 GATGGCATGCATTCTGCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: dtcP
Ortholog function: TRAP-type C4-dicarboxylate transport system, periplasmic component
Desulfomicrobium baculatum DSM 4028 Dbac_1588 -109 4.9 GATGGCATGCATTCTGCTC
Desulfovibrio desulfuricans G20 Dde_1275 -187 4.4 ATTGGAACACGCCTTGCCG
-84 4.7 TTTGGCACATTACCTGCTC
Desulfovibrio vulgaris Hildenborough DVU2822 -91 5.1 TTTGGCACGTTCCCTGCTC
Desulfovibrio vulgaris str. Miyazaki F DvMF_1932 -183 4.2 GACGGCATGTCGGTTGCAA
Position: -62
Score: 4.4
Sequence: CTTGGCAACAAACTTGCTA
Locus tag: Dbac_1721
Dbac_1721 -62 4.4 CTTGGCAACAAACTTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU1805
Ortholog function: GGDEF domain protein
Desulfomicrobium baculatum DSM 4028 Dbac_1721 -62 4.4 CTTGGCAACAAACTTGCTA
Desulfovibrio desulfuricans G20 Dde_1834 -70 3.7 CACGGCGCAAAGGTTGCAT
Desulfovibrio salexigens DSM 2638 Desal_3710 -67 4.3 AGTGGCCCTTTTTTTGCAA
Desulfovibrio vulgaris Hildenborough DVU1805 -69 5 AATGGCCCGCATATTGCTT
Desulfovibrio vulgaris str. Miyazaki F DvMF_0509 -128 4.6 CATGGACCAATTCTTGCTT
Position: -53
Score: 5
Sequence: GCTGGCACGCATCCTGCCT
Locus tag: Dbac_1728
Dbac_1728 -53 5 GCTGGCACGCATCCTGCCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lldG
Ortholog function: L-lactate dehydrogenase, hypothetical protein subunit LldG
Desulfohalobium retbaense DSM 5692 Dret_1032 -90 4.5 TATGGCATGGATATTGAAT
Desulfomicrobium baculatum DSM 4028 Dbac_1728 -53 5 GCTGGCACGCATCCTGCCT
Desulfovibrio desulfuricans G20 Dde_3244 -163 4.8 CATGGCATACTTTTTGTTT
Desulfovibrio magneticus RS-1 DMR_20010 -84 4.4 GATGGCACACGACTTGCGA
Desulfovibrio piger ATCC 29098 DESPIG_02395 -112 4 TTCGGAGCAGGTCTTGCTG
Desulfovibrio vulgaris Hildenborough DVU3032 -153 4.8 ATTGGCACATTTCTTGTTA
Desulfovibrio vulgaris str. Miyazaki F DvMF_1867 -368 4.8 ACTGGCACACTTCTTGTTG
Position: -84
Score: 4.5
Sequence: CCCGGCATATATTTTGCTA
Locus tag: Dbac_1753
Dbac_1753 -84 4.5 CCCGGCATATATTTTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Dbac_1753
Ortholog function: type IV pilus assembly PilZ
Desulfomicrobium baculatum DSM 4028 Dbac_1753 -84 4.5 CCCGGCATATATTTTGCTA
Position: -70
Score: 4.4
Sequence: GCTGGCCCGAAATCTGCTA
Locus tag: Dbac_1772
Dbac_1772 -70 4.4 GCTGGCCCGAAATCTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU3387
Ortholog function: hypothetical protein
Desulfomicrobium baculatum DSM 4028 Dbac_1772 -70 4.4 GCTGGCCCGAAATCTGCTA
Desulfovibrio desulfuricans G20 Dde_0108 -57 4.2 ATCGGCACTATGGTTGCTA
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0311 -61 4.8 CTTGGCACTGTACTTGCTG
Desulfovibrio magneticus RS-1 DMR_05460 -13 4.1 GTCGGCACAAGGGTTGCAA
Desulfovibrio salexigens DSM 2638 Desal_2614 -59 4.3 GTTGGTACGTTTGCTGCAA
Desulfovibrio vulgaris Hildenborough DVU3387 -92 4.1 GCAGGTGCGGTTCTTGCTA
Desulfovibrio vulgaris str. Miyazaki F DvMF_2067 -67 5 GCTGGCATTCCCCTTGCTT
Lawsonia intracellularis PHE/MN1-00 LI0507 -62 3.9 TAAGGCCTAAAATTTGCAT
Position: -146
Score: 3.6
Sequence: AATGGCAAGTATTTTTTTT
Locus tag: Dbac_1977
Dbac_1977 -146 3.6 AATGGCAAGTATTTTTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Dbac_1753
Ortholog function: type IV pilus assembly PilZ
Desulfomicrobium baculatum DSM 4028 Dbac_1753 -84 4.5 CCCGGCATATATTTTGCTA
Position: -84
Score: 5
Sequence: TATGGCATGCCATCTGCTT
Locus tag: Dbac_2145
Dbac_2145 -84 5 TATGGCATGCCATCTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Dbac_2145
Ortholog function: Formate C-acetyltransferase
Desulfomicrobium baculatum DSM 4028 Dbac_2145 -84 5 TATGGCATGCCATCTGCTT
Position: -113
Score: 5.2
Sequence: CTTGGAACGCTCTTTGCTC
Locus tag: Dbac_2146
Dbac_2146 -113 5.2 CTTGGAACGCTCTTTGCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: Dbac_2146
Ortholog function: 6-phosphogluconate dehydrogenase NAD-binding
Desulfomicrobium baculatum DSM 4028 Dbac_2146 -113 5.2 CTTGGAACGCTCTTTGCTC
Position: -282
Score: 5.3
Sequence: TTTGGAATGCTCCTTGCTT
Locus tag: Dbac_2155
Dbac_2155 -282 5.3 TTTGGAATGCTCCTTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Dbac_2155
Ortholog function: Hydrolase, UxaA family
Desulfomicrobium baculatum DSM 4028 Dbac_2155 -282 5.3 TTTGGAATGCTCCTTGCTT
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_2374 -198 5.3 TTTGGCACGCACATTGCTC
Position: -65
Score: 5
Sequence: ATTGGCATGGACCATGCTT
Locus tag: Dbac_2231
Dbac_2231 -65 5 ATTGGCATGGACCATGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Dbac_2231
Ortholog function: protein of unknown function DUF1555
Desulfomicrobium baculatum DSM 4028 Dbac_2231 -65 5 ATTGGCATGGACCATGCTT
Desulfomicrobium baculatum DSM 4028 Dbac_2235 -63 5 TTTGGCACGGTCGATGCAT
Desulfovibrio desulfuricans G20 Dde_2507 -73 4.6 ACAGGCACGGCGATTGCTT
Desulfovibrio desulfuricans G20 Dde_2509 -76 5.1 CATGGAACGCTGTTTGCTT
Desulfovibrio desulfuricans G20 Dde_2510 -72 4.9 TTTGGAACCGCTATTGCTT
Position: -63
Score: 5
Sequence: TTTGGCACGGTCGATGCAT
Locus tag: Dbac_2235
Dbac_2235 -63 5 TTTGGCACGGTCGATGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Dbac_2231
Ortholog function: protein of unknown function DUF1555
Desulfomicrobium baculatum DSM 4028 Dbac_2231 -65 5 ATTGGCATGGACCATGCTT
Desulfomicrobium baculatum DSM 4028 Dbac_2235 -63 5 TTTGGCACGGTCGATGCAT
Desulfovibrio desulfuricans G20 Dde_2507 -73 4.6 ACAGGCACGGCGATTGCTT
Desulfovibrio desulfuricans G20 Dde_2509 -76 5.1 CATGGAACGCTGTTTGCTT
Desulfovibrio desulfuricans G20 Dde_2510 -72 4.9 TTTGGAACCGCTATTGCTT
Position: -115
Score: 4.6
Sequence: GCTGGTACGTTCGTTGCTA
Locus tag: Dbac_2236
Dbac_2236 -115 4.6 GCTGGTACGTTCGTTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Dbac_2236
Ortholog function: type IV pilus assembly PilZ
Desulfomicrobium baculatum DSM 4028 Dbac_2236 -115 4.6 GCTGGTACGTTCGTTGCTA
Position: -29
Score: 4.5
Sequence: TTGTGCACGCTTTTTGCTA
Locus tag: Dbac_2249
Dbac_2249 -29 4.5 TTGTGCACGCTTTTTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fliJ
Ortholog function: Flagellar biosynthesis chaperone FliJ
Desulfohalobium retbaense DSM 5692 Dret_0573 -290 4.5 ATTGGAGCACTTTTTGCTC
-130 4.7 TATGGCGTGGTATTTGCAT
Desulfomicrobium baculatum DSM 4028 Dbac_2249 -29 4.5 TTGTGCACGCTTTTTGCTA
Desulfovibrio desulfuricans G20 Dde_2705 -112 5.1 TCTGGCCTGATCTTTGCTT
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0698 -119 3.9 CGTGGCATGGTGGCTGCGC
-63 5 CTTGGCCCGCTGTTTGCAC
Desulfovibrio magneticus RS-1 DMR_42100 -58 4.7 ACTGGCCCGTGTCTTGCAA
Desulfovibrio vulgaris Hildenborough DVU0913 -72 4.6 AACGGCCCGTTCCTTGCTA
Desulfovibrio vulgaris str. Miyazaki F DvMF_1393 -93 4.8 TTCGGCCCGGTATTTGCTA
Lawsonia intracellularis PHE/MN1-00 LI1060 -73 4.3 TTAGGAATATTTTTTGCAT
Position: -101
Score: 5.2
Sequence: GCTGGCATGGTCTTTGCCT
Locus tag: Dbac_2264
Dbac_2264 -101 5.2 GCTGGCATGGTCTTTGCCT
Supported by regulated orthologs from reference regulons