Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of RpoN regulog to Desulfovibrio vulgaris str. DP4

Reference regulog properties
Source regulog: RpoN - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: Sigma54
Regulation mode:
Biological process: Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism
Effector:
Phylum: Proteobacteria
Propagated regulon:
Target genome Desulfovibrio vulgaris str. DP4
Orthologous TF(s) Dvul_1505
Regulated genes 88
Built upon 487 sites [see more]
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

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Predicted regulatory interactions in Desulfovibrio vulgaris str. DP4
Locus tag Position Score Sequence
Position: -29
Score: 4.7
Sequence: CGAGGCACGGCTATTGCTT
Locus tag: Dvul_2966
Dvul_2966 -29 4.7 CGAGGCACGGCTATTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifA-2
Ortholog function: transcriptional regulator, NifA subfamily, Fis Family
Desulfomicrobium baculatum DSM 4028 Dbac_0594 -29 4.7 TGCGGCATCCTTGTTGCTT
Desulfovibrio vulgaris Hildenborough DVUA0143 -29 4.7 CGAGGCACGGCTATTGCTT
Position: -62
Score: 4.6
Sequence: CATGGCATACTTGCTGCTA
Locus tag: Dvul_3003
Dvul_3003 -62 4.6 CATGGCATACTTGCTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: DvMF_2420
Ortholog function: hypothetical protein
Desulfovibrio piger ATCC 29098 DESPIG_00690 -54 5.2 CATGGCACGCTTTATGCTT
Desulfovibrio vulgaris Hildenborough DVUA203 -62 4.6 CATGGCATACTTGCTGCTA
Position: -262
Score: 4.4
Sequence: GCTGGCCCGGTTTTCGCAA
Locus tag: Dvul_3004
Dvul_3004 -262 4.4 GCTGGCCCGGTTTTCGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVUA0106
Ortholog function: Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) / Type III secretion outermembrane negative regulator of secretion (TyeA)
Desulfovibrio piger ATCC 29098 DESPIG_00689 -73 4.5 TGTGGCATGATTCTGGCAT
Desulfovibrio vulgaris Hildenborough DVUA0106 -257 4.5 TCTGGCCCGCTTTTCGCAA
Desulfovibrio vulgaris str. Miyazaki F DvMF_2419 -63 4 CATGGCGTGATTCTCGCAT
Position: -6
Score: 4.9
Sequence: TATGGAATGCAATTTGCTT
Locus tag: Dvul_3020
Dvul_3020 -6 4.9 TATGGAATGCAATTTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVUA0089
Ortholog function: hypothetical protein
Desulfovibrio vulgaris Hildenborough DVUA0089 -51 4.9 TATGGAATGCAATTTGCTT
Position: -58
Score: 4.5
Sequence: TGTGGCACGGTATTGGCTC
Locus tag: Dvul_3073
Dvul_3073 -58 4.5 TGTGGCACGGTATTGGCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVUA0036
Ortholog function: PEP-CTERM system TPR-repeat lipoprotein
Desulfovibrio desulfuricans G20 Dde_0828 -94 4.8 TGTGGCACGGTTTTGGCTA
Desulfovibrio vulgaris str. Miyazaki F DvMF_0691 -61 4.3 GCTGGCATGGTATTGGCTC
Position: -134
Score: 4.2
Sequence: TTTGGCATGAATGTGGCAA
Locus tag: Dvul_3074
Dvul_3074 -134 4.2 TTTGGCATGAATGTGGCAA
Supported by regulated orthologs from reference regulons