Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of SahR regulog to Desulfovibrio vulgaris str. DP4

Reference regulog properties
Source regulog: SahR - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: ArsR
Regulation mode: repressor
Biological process: Methionine metabolism
Effector: S-adenosylhomocysteine
Phylum: Proteobacteria/delta
Propagated regulon:
Target genome Desulfovibrio vulgaris str. DP4
Orthologous TF(s) Dvul_2348
Regulated genes 4
Built upon 31 sites [see more]
Predicted regulatory interactions in Desulfovibrio vulgaris str. DP4
Locus tag Position Score Sequence
Position: -320
Score: 5.1
Sequence: TTGACAGGATATATTGATAT
Position: -304
Score: 5.3
Sequence: ATATCAGTATTTCCTGATGT
Locus tag: Dvul_0025
Dvul_0025 -320 5.1 TTGACAGGATATATTGATAT
-304 5.3 ATATCAGTATTTCCTGATGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: metE
Ortholog function: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
Desulfovibrio vulgaris Hildenborough DVU3371 -341 5.3 ATATCAGTATTTCCTGATGT
Desulfovibrio desulfuricans G20 Dde_2328 -293 4.4 ATATTGATGAATCTTGATAT
Desulfovibrio salexigens DSM 2638 Desal_0813 -282 4.8 ATATAACAATATTTTTATAT
-274 4.2 ATATTTTTATATATTGAATT
Position: -18
Score: 5.8
Sequence: ATATGTGGATAGGTTGATAT
Locus tag: Dvul_0787
Dvul_0787 -18 5.8 ATATGTGGATAGGTTGATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: panC
Ortholog function: Pantoate--beta-alanine ligase (EC 6.3.2.1)
Desulfovibrio vulgaris Hildenborough DVU2448 -18 5.8 ATATGTGGATAGGTTGATAT
Desulfovibrio vulgaris str. Miyazaki F DvMF_2942 -18 5.4 ATATTCGGATAACTTGATAT
Desulfovibrio desulfuricans G20 Dde_1498 -18 5.9 ATATGCGGATACATTGATAT
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_2286 -18 5.8 ATATCACAATACCTTGATAT
-10 4.2 ATACCTTGATATGCAGATAT
Desulfovibrio piger ATCC 29098 DESPIG_01871 -18 6.1 ATATCACCATACCTTGATAT
-10 4.2 ATACCTTGATATGCAGATAT
Position: -87
Score: 6.4
Sequence: ATATCAATCTATCTTGATAT
Locus tag: Dvul_1992
Dvul_1992 -87 6.4 ATATCAATCTATCTTGATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: metF
Ortholog function: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
Desulfovibrio vulgaris Hildenborough DVU0997 -87 6.4 ATATCAATCTATCTTGATAT
Desulfovibrio vulgaris str. Miyazaki F DvMF_3034 -208 6.6 ATATCAAGATAGCTTGATAT
Desulfovibrio desulfuricans G20 Dde_2525 -69 4.5 ATATTACAATAGGTCGATAT
-45 6.2 ATATAAGGCTATCTTGATAT
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_2008 -80 6.5 ATATCAATTTATCTTGATAT
Desulfovibrio piger ATCC 29098 DESPIG_02490 -73 6.2 TTATCAAGTTATATTGATAT
Desulfovibrio salexigens DSM 2638 Desal_0814 -282 4.8 ATATAACAATATTTTTATAT
-274 4.2 ATATTTTTATATATTGAATT
Position: -52
Score: 5.9
Sequence: ACATCAAGTTTTCTTGATTT
Locus tag: Dvul_2348
Dvul_2348 -52 5.9 ACATCAAGTTTTCTTGATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sahR
Ortholog function: Predicted regulator of methionine metabolism, ArsR family
Desulfovibrio vulgaris Hildenborough DVU0606 -52 5.9 ACATCAAGTTTTCTTGATTT
Desulfovibrio desulfuricans G20 Dde_3135 63 5.3 ACATCAACTTTTCTTGATTC
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0040 -57 5.4 ATATGCGGATAACTTGATAC
-35 5 GTATCAGCATAAATTGATTT
Desulfovibrio piger ATCC 29098 DESPIG_01931 -83 5.8 ATATCCAGATAGGCTGATAT
-61 4.1 GCATCAAGCAAATTTGATAC
Desulfovibrio salexigens DSM 2638 Desal_3078 -39 3.7 ATATAAAGGTTTTGTTATGT
Desulfovibrio magneticus RS-1 DMR_43430 -18 6.7 ATATCAGGATATCTTGATAT
Desulfomicrobium baculatum DSM 4028 Dbac_2305 -45 6.7 ATATCAGGATATCTTGATAT
Desulfohalobium retbaense DSM 5692 Dret_2302 -172 4.7 TTATCAACTTTTTCAGATAT
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