Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of DvMF_1994 regulog to Desulfovibrio vulgaris str. Miyazaki F

Reference regulog properties
Source regulog: DvMF_1994 - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Carbohydrate metabolism
Effector:
Phylum: Proteobacteria/delta
Propagated regulon:
Target genome Desulfovibrio vulgaris str. Miyazaki F
Orthologous TF(s) DvMF_1994
Regulated genes 3
Built upon 4 sites [see more]
Predicted regulatory interactions in Desulfovibrio vulgaris str. Miyazaki F
Locus tag Position Score Sequence
Position: -65
Score: 5.4
Sequence: ATCTTATATTTTTTGCAAGAC
Locus tag: DvMF_1994
DvMF_1994 -65 5.4 ATCTTATATTTTTTGCAAGAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: DvMF_1994
Ortholog function: transcriptional regulator, GntR family
Desulfovibrio vulgaris str. Miyazaki F DvMF_1994 -65 5.4 ATCTTATATTTTTTGCAAGAC
Position: -56
Score: 6.3
Sequence: GTCTTGCATAAGACATCATAC
Locus tag: DvMF_2004
DvMF_2004 -56 6.3 GTCTTGCATAAGACATCATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: DvMF_2004
Ortholog function: D-galactarate dehydratase/altronate hydrolase-like protein
Desulfovibrio vulgaris str. Miyazaki F DvMF_2004 -56 6.3 GTCTTGCATAAGACATCATAC
Desulfovibrio vulgaris str. Miyazaki F DvMF_2006 -57 6.3 GTCTTGCATAAGACATCATAC
Position: -57
Score: 6.3
Sequence: GTCTTGCATAAGACATCATAC
Locus tag: DvMF_2006
DvMF_2006 -57 6.3 GTCTTGCATAAGACATCATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: DvMF_2004
Ortholog function: D-galactarate dehydratase/altronate hydrolase-like protein
Desulfovibrio vulgaris str. Miyazaki F DvMF_2004 -56 6.3 GTCTTGCATAAGACATCATAC
Desulfovibrio vulgaris str. Miyazaki F DvMF_2006 -57 6.3 GTCTTGCATAAGACATCATAC