Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of HmcR regulog to Desulfovibrio vulgaris str. Miyazaki F

Reference regulog properties
Source regulog: HmcR - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode:
Biological process: Energy metabolism
Effector:
Phylum: Proteobacteria/delta
Propagated regulon:
Target genome Desulfovibrio vulgaris str. Miyazaki F
Orthologous TF(s) DvMF_2591
Regulated genes 1
Built upon 12 sites [see more]
Predicted regulatory interactions in Desulfovibrio vulgaris str. Miyazaki F
Locus tag Position Score Sequence
Position: -346
Score: 6
Sequence: TCGCATACCCCTCCGGTAGGAAT
Position: -321
Score: 5.9
Sequence: TTCCATACCCTAGAAGTAGGGTA
Locus tag: DvMF_2598
DvMF_2598 -346 6 TCGCATACCCCTCCGGTAGGAAT
-321 5.9 TTCCATACCCTAGAAGTAGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmcA
Ortholog function: High-molecular-weight cytochrome c precursor
Desulfohalobium retbaense DSM 5692 Dret_0877 -158 5.1 TCGCCTACTCAGCCGGTAGGTTT
-133 5.5 ATACCTACCACTGAAGTAGGATT
Desulfomicrobium baculatum DSM 4028 Dbac_0568 -194 4.6 TTCTATACCTCCGAGGTCGGAAT
Desulfovibrio desulfuricans G20 Dde_0653 -291 6 TCGCATACCTCAGCGGTAGGAAA
-266 5.5 AATCATACCATGCAGGTAGGGTA
Desulfovibrio salexigens DSM 2638 Desal_1378 -226 5.5 TAACATACCTATCGAGCAGGTAT
-201 4.7 AAACCTATCTATTGAGGAGGTAT
-176 4.5 ATACCAACCCGATGGATGGGAAA
Desulfovibrio vulgaris str. Miyazaki F DvMF_2598 -346 6 TCGCATACCCCTCCGGTAGGAAT
-321 5.9 TTCCATACCCTAGAAGTAGGGTA