Propagation of RpoN regulog to Desulfohalobium retbaense DSM 5692
| Source regulog: | RpoN - Desulfovibrionales |
| Regulator type: | Transcription factor |
| Regulator family: | Sigma54 |
| Regulation mode: | |
| Biological process: | Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism |
| Effector: | |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Desulfohalobium retbaense DSM 5692 |
| Orthologous TF(s) | Dret_1601 |
| Regulated genes | 31 |
Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -70
Score: 4.8 Sequence: ATTGGCCCCATCCTTGCTA
Locus tag: Dret_0113
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| Dret_0113 | -70 | 4.8 | ATTGGCCCCATCCTTGCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: amt | ||||
| Ortholog function: Ammonium transporter | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0113 | -70 | 4.8 | ATTGGCCCCATCCTTGCTA |
| Desulfomicrobium baculatum DSM 4028 | Dbac_3049 | -56 | 4.8 | TTTGGCACTGCCTGTGCTT |
| Desulfovibrio desulfuricans G20 | Dde_3492 | -71 | 4.9 | TTTGGCCCTCCTTTTGCTC |
| Desulfovibrio salexigens DSM 2638 | Desal_3066 | -65 | 5.1 | TTTGGCACAGTCCATGCTT |
|
Position: -82
Score: 4.6 Sequence: ATCGGAACGGATATTGCTT
Locus tag: Dret_0164
|
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| Dret_0164 | -82 | 4.6 | ATCGGAACGGATATTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Dde_0657 | ||||
| Ortholog function: 4Fe-4S ferredoxin iron-sulfur binding domain protein | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0164 | -82 | 4.6 | ATCGGAACGGATATTGCTT |
| Desulfovibrio desulfuricans G20 | Dde_0657 | -83 | 4.6 | ACCGGCACGGTTTGTGCTG |
| Desulfovibrio salexigens DSM 2638 | Desal_0829 | -80 | 4.3 | GTAGGTACGGATTCTGCTT |
|
Position: -228
Score: 4.1 Sequence: TCAGGCATATAAATTGCTT
Locus tag: Dret_0167
|
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| Dret_0167 | -228 | 4.1 | TCAGGCATATAAATTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU3144 | ||||
| Ortholog function: cytochrome c family protein | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0167 | -228 | 4.1 | TCAGGCATATAAATTGCTT |
| Desulfovibrio magneticus RS-1 | DMR_33620 | -104 | 5.1 | TTTGGCACGTTCCCTGCTG |
| Desulfovibrio salexigens DSM 2638 | Desal_0831 | -80 | 4.3 | GTAGGTACGGATTCTGCTT |
| Desulfovibrio vulgaris Hildenborough | DVU3144 | -68 | 4.5 | TCAGGCACAGTTCCTGCTC |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1694 | -95 | 4.5 | CCGGGCATGCTTCCTGCTC |
|
Position: -95
Score: 4.9 Sequence: TTTGGCCCGATATTTGCTC
Locus tag: Dret_0199
|
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| Dret_0199 | -95 | 4.9 | TTTGGCCCGATATTTGCTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adh | ||||
| Ortholog function: alcohol dehydrogenase, iron-containing( EC:1.1.1.1 ) | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0199 | -95 | 4.9 | TTTGGCCCGATATTTGCTC |
| Desulfomicrobium baculatum DSM 4028 | Dbac_3326 | -88 | 4.7 | TCTGGCCTCATTCTTGCCT |
| Desulfovibrio vulgaris Hildenborough | DVU2405 | -99 | 5.1 | TTTGGCCCCTTCCTTGCTT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_0321 | -98 | 5.2 | TTTGGCCCCGTCCTTGCTT |
|
Position: -193
Score: 3.9 Sequence: CTTTGTGCGCCCTTTGCTG
Locus tag: Dret_0208
|
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| Dret_0208 | -193 | 3.9 | CTTTGTGCGCCCTTTGCTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DvMF_1326 | ||||
| Ortholog function: protein of unknown function DUF52 | ||||
| Desulfovibrio desulfuricans G20 | Dde_2961 | -101 | 4.8 | CATTGCACGCCTTTTGCAT |
| Desulfovibrio salexigens DSM 2638 | Desal_2982 | -73 | 3.9 | GTAGGCAGGAATATTGCAA |
| Desulfovibrio vulgaris Hildenborough | DVU2897 | -13 | 5 | CATTGCACGGTTCTTGCTT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1326 | -146 | 4.4 | CGCTGCACGCTTTTTGCTA |
|
Position: -60
Score: 4.2 Sequence: ACCGGCACCGCCGTTGCCG
Locus tag: Dret_0260
|
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| Dret_0260 | -60 | 4.2 | ACCGGCACCGCCGTTGCCG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Ddes_0751 | ||||
| Ortholog function: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-) | ||||
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_0751 | -76 | 4.1 | TGCGGCCCGGCGCGTGCTG |
| Desulfovibrio piger ATCC 29098 | DESPIG_01519 | 8 | 3.6 | TGCGGCCGGCATGCTGCTG |
|
Position: -67
Score: 4.8 Sequence: ATCGGCACGGACATTGCTA
Locus tag: Dret_0446
|
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| Dret_0446 | -67 | 4.8 | ATCGGCACGGACATTGCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU2107 | ||||
| Ortholog function: hypothetical protein | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0446 | -67 | 4.8 | ATCGGCACGGACATTGCTA |
| Desulfomicrobium baculatum DSM 4028 | Dbac_2301 | -43 | 4.7 | GGCGGCACGGCTCATGCTT |
| Desulfovibrio desulfuricans G20 | Dde_3197 | -49 | 4.2 | GTCGGCATCATTCCTGCCT |
| Desulfovibrio magneticus RS-1 | DMR_11290 | -42 | 4.9 | TTCGGCACGGTTCCTGCCT |
| Desulfovibrio salexigens DSM 2638 | Desal_0622 | -30 | 4.7 | CATGGCACGGACTATGCCT |
| Desulfovibrio vulgaris Hildenborough | DVU2107 | -51 | 4.4 | CACGGCATCATTCCTGCTT |
|
Position: -290
Score: 4.5 Sequence: ATTGGAGCACTTTTTGCTC
Position: -130
Score: 4.7 Sequence: TATGGCGTGGTATTTGCAT
Locus tag: Dret_0569
|
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| Dret_0569 | -290 | 4.5 | ATTGGAGCACTTTTTGCTC | |
| -130 | 4.7 | TATGGCGTGGTATTTGCAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fliF | ||||
| Ortholog function: Flagellar M-ring protein FliF | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0569 | -290 | 4.5 | ATTGGAGCACTTTTTGCTC |
| -130 | 4.7 | TATGGCGTGGTATTTGCAT | ||
| Desulfomicrobium baculatum DSM 4028 | Dbac_3029 | -91 | 4.7 | TCTGGAATGGTCATTGCAA |
| Desulfovibrio desulfuricans G20 | Dde_0353 | -75 | 4.9 | CATGGAACACACCTTGCTT |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_1573 | -79 | 4.5 | TTAGGCATGAATGTTGCTA |
| Desulfovibrio magneticus RS-1 | DMR_45050 | -82 | 4.9 | GCTGGAACGCTTTTTGCCC |
| Desulfovibrio salexigens DSM 2638 | Desal_1153 | -50 | 4.8 | AATGGCCCACCATTTGCTT |
| Desulfovibrio vulgaris Hildenborough | DVU0313 | -91 | 4.9 | CGTGGAACCCTTTTTGCTT |
| Lawsonia intracellularis PHE/MN1-00 | LI0857 | -68 | 5 | TATGGCATATGTTTTGCTT |
|
Position: -51
Score: 4.5 Sequence: GCTGGCATAATTTATGCTA
Locus tag: Dret_0578
|
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| Dret_0578 | -51 | 4.5 | GCTGGCATAATTTATGCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: motA | ||||
| Ortholog function: Flagellar motor rotation protein MotA | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0578 | -51 | 4.5 | GCTGGCATAATTTATGCTA |
| Desulfovibrio desulfuricans G20 | Dde_3589 | -85 | 4 | CGTGGCGCGCTGCTTGACT |
|
Position: 29
Score: 3.4 Sequence: CTGGCCCTCCTTTTTGCTC
Locus tag: Dret_0586
|
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| Dret_0586 | 29 | 3.4 | CTGGCCCTCCTTTTTGCTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fliR | ||||
| Ortholog function: Flagellar biosynthesis protein FliR | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0586 | -51 | 4.5 | GCTGGCATAATTTATGCTA |
| Desulfomicrobium baculatum DSM 4028 | Dbac_3473 | -30 | 4.7 | TCTGGTCCGCGTTTTGCTG |
| Desulfovibrio desulfuricans G20 | Dde_0378 | -30 | 4.6 | GATGGTCTGTTTTTTGCTT |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_0193 | -29 | 4.7 | TTTGGCAACCATTTTGCAA |
| Desulfovibrio magneticus RS-1 | DMR_23860 | -29 | 4.6 | CTTGGTCCAGCTTTTGCTA |
| Desulfovibrio salexigens DSM 2638 | Desal_2592 | -41 | 3.4 | ATGGGTCCTGATTTTGCAG |
| Desulfovibrio vulgaris Hildenborough | DVU3234 | -29 | 4.8 | CGTGGCCCGTATTTTGCTC |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2016 | -29 | 5.1 | CATGGCCCGCATCTTGCTG |
|
Position: 10
Score: 3.8 Sequence: ATTGGCCTACTGATGGCAT
Locus tag: Dret_0617
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| Dret_0617 | 10 | 3.8 | ATTGGCCTACTGATGGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU3002 | ||||
| Ortholog function: Methyltransferase type 12 | ||||
| Desulfovibrio salexigens DSM 2638 | Desal_0577 | -221 | 4.3 | CTCGGCATCGGCATTGCAT |
| Desulfovibrio vulgaris Hildenborough | DVU3002 | -220 | 4.9 | GTTGGCACGGATAGTGCTT |
|
Position: -159
Score: 3.5 Sequence: TAGGGCTCAGGTGTTGCCT
Locus tag: Dret_0653
|
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| Dret_0653 | -159 | 3.5 | TAGGGCTCAGGTGTTGCCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: flgB | ||||
| Ortholog function: Flagellar basal-body rod protein FlgB | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0653 | -159 | 3.5 | TAGGGCTCAGGTGTTGCCT |
| Desulfomicrobium baculatum DSM 4028 | Dbac_3026 | -91 | 4.7 | TCTGGAATGGTCATTGCAA |
| Desulfovibrio desulfuricans G20 | Dde_0356 | -75 | 4.9 | CATGGAACACACCTTGCTT |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_1576 | -59 | 4.8 | TTTGGAACAAATGTTGCTT |
| Desulfovibrio magneticus RS-1 | DMR_45020 | -82 | 4.9 | GCTGGAACGCTTTTTGCCC |
| Desulfovibrio salexigens DSM 2638 | Desal_1156 | -96 | 4.9 | AATGGAACACCTTTTGCTA |
| Desulfovibrio vulgaris Hildenborough | DVU0316 | -91 | 4.9 | CGTGGAACCCTTTTTGCTT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2284 | -106 | 4.8 | GCTGGAACACCTCTTGCTG |
| Lawsonia intracellularis PHE/MN1-00 | LI0860 | -68 | 5 | TATGGCATATGTTTTGCTT |
|
Position: -90
Score: 4.5 Sequence: TATGGCATGGATATTGAAT
Locus tag: Dret_1039
|
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| Dret_1039 | -90 | 4.5 | TATGGCATGGATATTGAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lldP | ||||
| Ortholog function: L-lactate permease | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_1039 | -90 | 4.5 | TATGGCATGGATATTGAAT |
| Desulfomicrobium baculatum DSM 4028 | Dbac_1045 | -91 | 4.3 | AGTGGCACAAAACTTGTTT |
| Desulfovibrio desulfuricans G20 | Dde_3238 | -163 | 4.8 | CATGGCATACTTTTTGTTT |
| Desulfovibrio vulgaris Hildenborough | DVU2451 | -211 | 4.8 | CTTGGCCCGGTAATTGCTG |
| Desulfovibrio vulgaris Hildenborough | DVU3026 | -153 | 4.8 | ATTGGCACATTTCTTGTTA |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1861 | -368 | 4.8 | ACTGGCACACTTCTTGTTG |
|
Position: -147
Score: 4.6 Sequence: TTTGGTTTGCTTTTTGCTT
Locus tag: Dret_1220
|
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| Dret_1220 | -147 | 4.6 | TTTGGTTTGCTTTTTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU0943 | ||||
| Ortholog function: membrane protein, putative | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_1220 | -147 | 4.6 | TTTGGTTTGCTTTTTGCTT |
| Desulfomicrobium baculatum DSM 4028 | Dbac_2656 | -84 | 4.9 | TGTGGCAGGTCTTTTGCTT |
| Desulfovibrio desulfuricans G20 | Dde_0876 | -116 | 5.2 | TCTGGCACGCTTCTTGTTA |
| Desulfovibrio salexigens DSM 2638 | Desal_0416 | -87 | 5.2 | TCTGGCCCGCCTTTTGCCT |
| Desulfovibrio vulgaris Hildenborough | DVU0943 | -73 | 5.2 | TCTGGCACGCTTCTTGTTC |
| Desulfovibrio vulgaris Hildenborough | DVU2133 | -73 | 4.9 | CATTGCACGCTTCTTGCTC |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1363 | -85 | 5.3 | TTTGGCACGCCTCTTGATT |
|
Position: -210
Score: 4.6 Sequence: TTTGGCAAAGTTTGTGCAT
Locus tag: Dret_1485
|
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| Dret_1485 | -210 | 4.6 | TTTGGCAAAGTTTGTGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ald | ||||
| Ortholog function: Alanine dehydrogenase (EC 1.4.1.1) | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_1485 | -210 | 4.6 | TTTGGCAAAGTTTGTGCAT |
| Desulfomicrobium baculatum DSM 4028 | Dbac_3071 | -67 | 4.4 | TGTGGTAAGCTTTTTGCCA |
| Desulfovibrio desulfuricans G20 | Dde_1553 | -84 | 5.1 | TCTGGCAAGGTGTTTGCTT |
| Desulfovibrio magneticus RS-1 | DMR_45640 | -76 | 4.6 | CCTGGCAAGGGACTTGCTA |
| Desulfovibrio salexigens DSM 2638 | Desal_3303 | -111 | 4.8 | TTTGGCATGCGGATTGCCT |
| Desulfovibrio vulgaris Hildenborough | DVU0571 | -124 | 5 | GTTGGCAAGGCCTTTGCTA |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2154 | -120 | 5 | GTTGGCAAGGCGTTTGCTT |
|
Position: -40
Score: 4.9 Sequence: CGTGGAATGATTTTTGCTT
Locus tag: Dret_2081
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| Dret_2081 | -40 | 4.9 | CGTGGAATGATTTTTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lpxC | ||||
| Ortholog function: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-) | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_2081 | -40 | 4.9 | CGTGGAATGATTTTTGCTT |
| Desulfomicrobium baculatum DSM 4028 | Dbac_2789 | -29 | 4.4 | TCTGGCATGAAGTTTGATA |
| Desulfovibrio desulfuricans G20 | Dde_2986 | -41 | 4.8 | AACGGCACGATTATTGCTT |
| Desulfovibrio salexigens DSM 2638 | Desal_2604 | -43 | 4.6 | GATGGCATATTATTTGCTG |
| Desulfovibrio vulgaris Hildenborough | DVU2917 | -196 | 4 | GACGGCAAGCCGCCTGCTG |
| -40 | 5.3 | TCTGGCACATCTTTTGCTT | ||
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1446 | -38 | 5.3 | TTTGGCACGGTTCATGCTC |
| Lawsonia intracellularis PHE/MN1-00 | LI0627 | -40 | 4.3 | TTTGGATCGTTTATTGCAT |
|
Position: -53
Score: 5.1 Sequence: TTTGGCACCTCTCTTGCCT
Locus tag: Dret_2267
|
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| Dret_2267 | -53 | 5.1 | TTTGGCACCTCTCTTGCCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: amt | ||||
| Ortholog function: Ammonium transporter | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_2267 | -53 | 5.1 | TTTGGCACCTCTCTTGCCT |
| Desulfomicrobium baculatum DSM 4028 | Dbac_3048 | -45 | 5.2 | TATGGCACCGTCCTTGCTC |
| Desulfovibrio desulfuricans G20 | Dde_2311 | -75 | 5.2 | TCTGGCCTGCTGCTTGCTT |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_1147 | -126 | 4.7 | CTTGGCACAGATAGTGCTT |
| Desulfovibrio piger ATCC 29098 | DESPIG_00642 | -127 | 5.1 | TATGGCACAGGGCTTGCTT |
| Desulfovibrio salexigens DSM 2638 | Desal_3438 | -145 | 4.8 | TTTGGCACAATGCGTGCTT |
| Desulfovibrio vulgaris Hildenborough | DVU1231 | -81 | 5 | GTTGGCACGCGACTTGCCT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_0866 | -98 | 5.3 | GATGGCACGCTCCTTGCCT |
|
Position: -78
Score: 5 Sequence: TTTGGCACGCCCAATGCAT
Locus tag: Dret_2390
|
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| Dret_2390 | -78 | 5 | TTTGGCACGCCCAATGCAT | |
| Supported by regulated orthologs from reference regulons | ||||