Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of RpoN regulog to Desulfohalobium retbaense DSM 5692

Reference regulog properties
Source regulog: RpoN - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: Sigma54
Regulation mode:
Biological process: Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism
Effector:
Phylum: Proteobacteria
Propagated regulon:
Target genome Desulfohalobium retbaense DSM 5692
Orthologous TF(s) Dret_1601
Regulated genes 31
Built upon 487 sites [see more]
Error

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

The page you are looking for does not exist.

© 2009-2020 RegPrecise
Predicted regulatory interactions in Desulfohalobium retbaense DSM 5692
Locus tag Position Score Sequence
Position: -70
Score: 4.8
Sequence: ATTGGCCCCATCCTTGCTA
Locus tag: Dret_0113
Dret_0113 -70 4.8 ATTGGCCCCATCCTTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt
Ortholog function: Ammonium transporter
Desulfohalobium retbaense DSM 5692 Dret_0113 -70 4.8 ATTGGCCCCATCCTTGCTA
Desulfomicrobium baculatum DSM 4028 Dbac_3049 -56 4.8 TTTGGCACTGCCTGTGCTT
Desulfovibrio desulfuricans G20 Dde_3492 -71 4.9 TTTGGCCCTCCTTTTGCTC
Desulfovibrio salexigens DSM 2638 Desal_3066 -65 5.1 TTTGGCACAGTCCATGCTT
Position: -82
Score: 4.6
Sequence: ATCGGAACGGATATTGCTT
Locus tag: Dret_0164
Dret_0164 -82 4.6 ATCGGAACGGATATTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Dde_0657
Ortholog function: 4Fe-4S ferredoxin iron-sulfur binding domain protein
Desulfohalobium retbaense DSM 5692 Dret_0164 -82 4.6 ATCGGAACGGATATTGCTT
Desulfovibrio desulfuricans G20 Dde_0657 -83 4.6 ACCGGCACGGTTTGTGCTG
Desulfovibrio salexigens DSM 2638 Desal_0829 -80 4.3 GTAGGTACGGATTCTGCTT
Position: -228
Score: 4.1
Sequence: TCAGGCATATAAATTGCTT
Locus tag: Dret_0167
Dret_0167 -228 4.1 TCAGGCATATAAATTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU3144
Ortholog function: cytochrome c family protein
Desulfohalobium retbaense DSM 5692 Dret_0167 -228 4.1 TCAGGCATATAAATTGCTT
Desulfovibrio magneticus RS-1 DMR_33620 -104 5.1 TTTGGCACGTTCCCTGCTG
Desulfovibrio salexigens DSM 2638 Desal_0831 -80 4.3 GTAGGTACGGATTCTGCTT
Desulfovibrio vulgaris Hildenborough DVU3144 -68 4.5 TCAGGCACAGTTCCTGCTC
Desulfovibrio vulgaris str. Miyazaki F DvMF_1694 -95 4.5 CCGGGCATGCTTCCTGCTC
Position: -95
Score: 4.9
Sequence: TTTGGCCCGATATTTGCTC
Locus tag: Dret_0199
Dret_0199 -95 4.9 TTTGGCCCGATATTTGCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: adh
Ortholog function: alcohol dehydrogenase, iron-containing( EC:1.1.1.1 )
Desulfohalobium retbaense DSM 5692 Dret_0199 -95 4.9 TTTGGCCCGATATTTGCTC
Desulfomicrobium baculatum DSM 4028 Dbac_3326 -88 4.7 TCTGGCCTCATTCTTGCCT
Desulfovibrio vulgaris Hildenborough DVU2405 -99 5.1 TTTGGCCCCTTCCTTGCTT
Desulfovibrio vulgaris str. Miyazaki F DvMF_0321 -98 5.2 TTTGGCCCCGTCCTTGCTT
Position: -193
Score: 3.9
Sequence: CTTTGTGCGCCCTTTGCTG
Locus tag: Dret_0208
Dret_0208 -193 3.9 CTTTGTGCGCCCTTTGCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: DvMF_1326
Ortholog function: protein of unknown function DUF52
Desulfovibrio desulfuricans G20 Dde_2961 -101 4.8 CATTGCACGCCTTTTGCAT
Desulfovibrio salexigens DSM 2638 Desal_2982 -73 3.9 GTAGGCAGGAATATTGCAA
Desulfovibrio vulgaris Hildenborough DVU2897 -13 5 CATTGCACGGTTCTTGCTT
Desulfovibrio vulgaris str. Miyazaki F DvMF_1326 -146 4.4 CGCTGCACGCTTTTTGCTA
Position: -60
Score: 4.2
Sequence: ACCGGCACCGCCGTTGCCG
Locus tag: Dret_0260
Dret_0260 -60 4.2 ACCGGCACCGCCGTTGCCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: Ddes_0751
Ortholog function: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0751 -76 4.1 TGCGGCCCGGCGCGTGCTG
Desulfovibrio piger ATCC 29098 DESPIG_01519 8 3.6 TGCGGCCGGCATGCTGCTG
Position: -67
Score: 4.8
Sequence: ATCGGCACGGACATTGCTA
Locus tag: Dret_0446
Dret_0446 -67 4.8 ATCGGCACGGACATTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU2107
Ortholog function: hypothetical protein
Desulfohalobium retbaense DSM 5692 Dret_0446 -67 4.8 ATCGGCACGGACATTGCTA
Desulfomicrobium baculatum DSM 4028 Dbac_2301 -43 4.7 GGCGGCACGGCTCATGCTT
Desulfovibrio desulfuricans G20 Dde_3197 -49 4.2 GTCGGCATCATTCCTGCCT
Desulfovibrio magneticus RS-1 DMR_11290 -42 4.9 TTCGGCACGGTTCCTGCCT
Desulfovibrio salexigens DSM 2638 Desal_0622 -30 4.7 CATGGCACGGACTATGCCT
Desulfovibrio vulgaris Hildenborough DVU2107 -51 4.4 CACGGCATCATTCCTGCTT
Position: -290
Score: 4.5
Sequence: ATTGGAGCACTTTTTGCTC
Position: -130
Score: 4.7
Sequence: TATGGCGTGGTATTTGCAT
Locus tag: Dret_0569
Dret_0569 -290 4.5 ATTGGAGCACTTTTTGCTC
-130 4.7 TATGGCGTGGTATTTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fliF
Ortholog function: Flagellar M-ring protein FliF
Desulfohalobium retbaense DSM 5692 Dret_0569 -290 4.5 ATTGGAGCACTTTTTGCTC
-130 4.7 TATGGCGTGGTATTTGCAT
Desulfomicrobium baculatum DSM 4028 Dbac_3029 -91 4.7 TCTGGAATGGTCATTGCAA
Desulfovibrio desulfuricans G20 Dde_0353 -75 4.9 CATGGAACACACCTTGCTT
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_1573 -79 4.5 TTAGGCATGAATGTTGCTA
Desulfovibrio magneticus RS-1 DMR_45050 -82 4.9 GCTGGAACGCTTTTTGCCC
Desulfovibrio salexigens DSM 2638 Desal_1153 -50 4.8 AATGGCCCACCATTTGCTT
Desulfovibrio vulgaris Hildenborough DVU0313 -91 4.9 CGTGGAACCCTTTTTGCTT
Lawsonia intracellularis PHE/MN1-00 LI0857 -68 5 TATGGCATATGTTTTGCTT
Position: -51
Score: 4.5
Sequence: GCTGGCATAATTTATGCTA
Locus tag: Dret_0578
Dret_0578 -51 4.5 GCTGGCATAATTTATGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: motA
Ortholog function: Flagellar motor rotation protein MotA
Desulfohalobium retbaense DSM 5692 Dret_0578 -51 4.5 GCTGGCATAATTTATGCTA
Desulfovibrio desulfuricans G20 Dde_3589 -85 4 CGTGGCGCGCTGCTTGACT
Position: 29
Score: 3.4
Sequence: CTGGCCCTCCTTTTTGCTC
Locus tag: Dret_0586
Dret_0586 29 3.4 CTGGCCCTCCTTTTTGCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fliR
Ortholog function: Flagellar biosynthesis protein FliR
Desulfohalobium retbaense DSM 5692 Dret_0586 -51 4.5 GCTGGCATAATTTATGCTA
Desulfomicrobium baculatum DSM 4028 Dbac_3473 -30 4.7 TCTGGTCCGCGTTTTGCTG
Desulfovibrio desulfuricans G20 Dde_0378 -30 4.6 GATGGTCTGTTTTTTGCTT
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0193 -29 4.7 TTTGGCAACCATTTTGCAA
Desulfovibrio magneticus RS-1 DMR_23860 -29 4.6 CTTGGTCCAGCTTTTGCTA
Desulfovibrio salexigens DSM 2638 Desal_2592 -41 3.4 ATGGGTCCTGATTTTGCAG
Desulfovibrio vulgaris Hildenborough DVU3234 -29 4.8 CGTGGCCCGTATTTTGCTC
Desulfovibrio vulgaris str. Miyazaki F DvMF_2016 -29 5.1 CATGGCCCGCATCTTGCTG
Position: 10
Score: 3.8
Sequence: ATTGGCCTACTGATGGCAT
Locus tag: Dret_0617
Dret_0617 10 3.8 ATTGGCCTACTGATGGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU3002
Ortholog function: Methyltransferase type 12
Desulfovibrio salexigens DSM 2638 Desal_0577 -221 4.3 CTCGGCATCGGCATTGCAT
Desulfovibrio vulgaris Hildenborough DVU3002 -220 4.9 GTTGGCACGGATAGTGCTT
Position: -159
Score: 3.5
Sequence: TAGGGCTCAGGTGTTGCCT
Locus tag: Dret_0653
Dret_0653 -159 3.5 TAGGGCTCAGGTGTTGCCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: flgB
Ortholog function: Flagellar basal-body rod protein FlgB
Desulfohalobium retbaense DSM 5692 Dret_0653 -159 3.5 TAGGGCTCAGGTGTTGCCT
Desulfomicrobium baculatum DSM 4028 Dbac_3026 -91 4.7 TCTGGAATGGTCATTGCAA
Desulfovibrio desulfuricans G20 Dde_0356 -75 4.9 CATGGAACACACCTTGCTT
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_1576 -59 4.8 TTTGGAACAAATGTTGCTT
Desulfovibrio magneticus RS-1 DMR_45020 -82 4.9 GCTGGAACGCTTTTTGCCC
Desulfovibrio salexigens DSM 2638 Desal_1156 -96 4.9 AATGGAACACCTTTTGCTA
Desulfovibrio vulgaris Hildenborough DVU0316 -91 4.9 CGTGGAACCCTTTTTGCTT
Desulfovibrio vulgaris str. Miyazaki F DvMF_2284 -106 4.8 GCTGGAACACCTCTTGCTG
Lawsonia intracellularis PHE/MN1-00 LI0860 -68 5 TATGGCATATGTTTTGCTT
Position: -90
Score: 4.5
Sequence: TATGGCATGGATATTGAAT
Locus tag: Dret_1039
Dret_1039 -90 4.5 TATGGCATGGATATTGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lldP
Ortholog function: L-lactate permease
Desulfohalobium retbaense DSM 5692 Dret_1039 -90 4.5 TATGGCATGGATATTGAAT
Desulfomicrobium baculatum DSM 4028 Dbac_1045 -91 4.3 AGTGGCACAAAACTTGTTT
Desulfovibrio desulfuricans G20 Dde_3238 -163 4.8 CATGGCATACTTTTTGTTT
Desulfovibrio vulgaris Hildenborough DVU2451 -211 4.8 CTTGGCCCGGTAATTGCTG
Desulfovibrio vulgaris Hildenborough DVU3026 -153 4.8 ATTGGCACATTTCTTGTTA
Desulfovibrio vulgaris str. Miyazaki F DvMF_1861 -368 4.8 ACTGGCACACTTCTTGTTG
Position: -147
Score: 4.6
Sequence: TTTGGTTTGCTTTTTGCTT
Locus tag: Dret_1220
Dret_1220 -147 4.6 TTTGGTTTGCTTTTTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU0943
Ortholog function: membrane protein, putative
Desulfohalobium retbaense DSM 5692 Dret_1220 -147 4.6 TTTGGTTTGCTTTTTGCTT
Desulfomicrobium baculatum DSM 4028 Dbac_2656 -84 4.9 TGTGGCAGGTCTTTTGCTT
Desulfovibrio desulfuricans G20 Dde_0876 -116 5.2 TCTGGCACGCTTCTTGTTA
Desulfovibrio salexigens DSM 2638 Desal_0416 -87 5.2 TCTGGCCCGCCTTTTGCCT
Desulfovibrio vulgaris Hildenborough DVU0943 -73 5.2 TCTGGCACGCTTCTTGTTC
Desulfovibrio vulgaris Hildenborough DVU2133 -73 4.9 CATTGCACGCTTCTTGCTC
Desulfovibrio vulgaris str. Miyazaki F DvMF_1363 -85 5.3 TTTGGCACGCCTCTTGATT
Position: -210
Score: 4.6
Sequence: TTTGGCAAAGTTTGTGCAT
Locus tag: Dret_1485
Dret_1485 -210 4.6 TTTGGCAAAGTTTGTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ald
Ortholog function: Alanine dehydrogenase (EC 1.4.1.1)
Desulfohalobium retbaense DSM 5692 Dret_1485 -210 4.6 TTTGGCAAAGTTTGTGCAT
Desulfomicrobium baculatum DSM 4028 Dbac_3071 -67 4.4 TGTGGTAAGCTTTTTGCCA
Desulfovibrio desulfuricans G20 Dde_1553 -84 5.1 TCTGGCAAGGTGTTTGCTT
Desulfovibrio magneticus RS-1 DMR_45640 -76 4.6 CCTGGCAAGGGACTTGCTA
Desulfovibrio salexigens DSM 2638 Desal_3303 -111 4.8 TTTGGCATGCGGATTGCCT
Desulfovibrio vulgaris Hildenborough DVU0571 -124 5 GTTGGCAAGGCCTTTGCTA
Desulfovibrio vulgaris str. Miyazaki F DvMF_2154 -120 5 GTTGGCAAGGCGTTTGCTT
Position: -40
Score: 4.9
Sequence: CGTGGAATGATTTTTGCTT
Locus tag: Dret_2081
Dret_2081 -40 4.9 CGTGGAATGATTTTTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpxC
Ortholog function: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-)
Desulfohalobium retbaense DSM 5692 Dret_2081 -40 4.9 CGTGGAATGATTTTTGCTT
Desulfomicrobium baculatum DSM 4028 Dbac_2789 -29 4.4 TCTGGCATGAAGTTTGATA
Desulfovibrio desulfuricans G20 Dde_2986 -41 4.8 AACGGCACGATTATTGCTT
Desulfovibrio salexigens DSM 2638 Desal_2604 -43 4.6 GATGGCATATTATTTGCTG
Desulfovibrio vulgaris Hildenborough DVU2917 -196 4 GACGGCAAGCCGCCTGCTG
-40 5.3 TCTGGCACATCTTTTGCTT
Desulfovibrio vulgaris str. Miyazaki F DvMF_1446 -38 5.3 TTTGGCACGGTTCATGCTC
Lawsonia intracellularis PHE/MN1-00 LI0627 -40 4.3 TTTGGATCGTTTATTGCAT
Position: -53
Score: 5.1
Sequence: TTTGGCACCTCTCTTGCCT
Locus tag: Dret_2267
Dret_2267 -53 5.1 TTTGGCACCTCTCTTGCCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt
Ortholog function: Ammonium transporter
Desulfohalobium retbaense DSM 5692 Dret_2267 -53 5.1 TTTGGCACCTCTCTTGCCT
Desulfomicrobium baculatum DSM 4028 Dbac_3048 -45 5.2 TATGGCACCGTCCTTGCTC
Desulfovibrio desulfuricans G20 Dde_2311 -75 5.2 TCTGGCCTGCTGCTTGCTT
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_1147 -126 4.7 CTTGGCACAGATAGTGCTT
Desulfovibrio piger ATCC 29098 DESPIG_00642 -127 5.1 TATGGCACAGGGCTTGCTT
Desulfovibrio salexigens DSM 2638 Desal_3438 -145 4.8 TTTGGCACAATGCGTGCTT
Desulfovibrio vulgaris Hildenborough DVU1231 -81 5 GTTGGCACGCGACTTGCCT
Desulfovibrio vulgaris str. Miyazaki F DvMF_0866 -98 5.3 GATGGCACGCTCCTTGCCT
Position: -78
Score: 5
Sequence: TTTGGCACGCCCAATGCAT
Locus tag: Dret_2390
Dret_2390 -78 5 TTTGGCACGCCCAATGCAT
Supported by regulated orthologs from reference regulons