Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Exiguobacterium sibiricum 255-15

Reference regulog properties
Source regulog: CcpA - Bacillales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein
Phylum: Firmicutes
Propagated regulon:
Target genome Exiguobacterium sibiricum 255-15
Orthologous TF(s) Exig_2242
Regulated genes 18
Built upon 559 sites [see more]
Predicted regulatory interactions in Exiguobacterium sibiricum 255-15
Locus tag Position Score Sequence
Position: -69
Score: 4.2
Sequence: GTGCAAGCGCTATCTT
Locus tag: Exig_0133
Exig_0133 -69 4.2 GTGCAAGCGCTATCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mrp
Ortholog function: Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like
Anoxybacillus flavithermus WK1 Aflv_0142 -34 4 GTGAAACCGAATACAT
Bacillus amyloliquefaciens FZB42 RBAM_001800 -32 4.1 TTGTAAACGAATACAC
Bacillus cereus ATCC 14579 BC0168 -84 4.5 ATGTAAACGCATTTAT
Bacillus licheniformis DSM 13 BLi00172 -31 4.5 TTGTAAACGAATACAA
Bacillus pumilus SAFR-032 BPUM_0145 -35 4.6 TTGTAAACGAATTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU01540 -32 4.1 TTGTAAACGAATACAC
Position: -60
Score: 4.8
Sequence: AAGAAAGCGCTTCCAA
Locus tag: Exig_0226
Exig_0226 -60 4.8 AAGAAAGCGCTTCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cstA
Ortholog function: Carbon starvation-induced membrane protein
Bacillus amyloliquefaciens FZB42 RBAM_025770 0 4.4 ATGAATGCGATTACAA
Bacillus licheniformis DSM 13 BLi03019 -62 4.3 ATGATTGCGCTTACAA
Bacillus pumilus SAFR-032 BPUM_2525 0 4.6 ATGAATGCGGTTACAA
Bacillus subtilis subsp. subtilis str. 168 BSU28710 0 4.6 ATGAATGCGGTTACAA
Position: -159
Score: 5.1
Sequence: TTGACAGCGTTTTCAT
Locus tag: Exig_0714
Exig_0714 -159 5.1 TTGACAGCGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF
Ortholog function: Glycerol uptake facilitator protein
Bacillus cereus ATCC 14579 BC1034 -191 4.7 TTGACACCGCTTTCAT
Bacillus clausii KSM-K16 ABC3383 -198 4.2 ATGTATCCGTTTACAA
Bacillus licheniformis DSM 13 BLi00994 -207 4.5 TTGACAACGCTTTCAC
Bacillus pumilus SAFR-032 BPUM_0882 -191 4.9 TTGACAACGTTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU09280 -182 4.7 TTGACACCGCTTTCAT
Geobacillus kaustophilus HTA426 GK1359 -206 5.1 TTGACAGCGTTTTCAA
Oceanobacillus iheyensis HTE831 OB2476 -164 4.7 TTGACAACGCTTTCAG
Position: -281
Score: 5.1
Sequence: ATGTAAACGTTTTCTT
Position: -129
Score: 4.8
Sequence: ATGCAAACGTTTTCAT
Locus tag: Exig_0750
Exig_0750 -281 5.1 ATGTAAACGTTTTCTT
-129 4.8 ATGCAAACGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cycB
Ortholog function: Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein
Bacillus clausii KSM-K16 ABC3520 -37 4.6 AAGAAAGCGGTTACTT
Bacillus halodurans C-125 BH2019 -55 4.4 TATAAAACGCTTTCAT
Bacillus pumilus SAFR-032 BPUM_3613 -51 4.8 AAGAAAGCGTTTTCTT
Bacillus subtilis subsp. subtilis str. 168 BSU34160 -39 5 TTTAAAGCGCTTTCAT
Position: -38
Score: 4.8
Sequence: ATGTAAACGCTTTATA
Locus tag: Exig_1056
Exig_1056 -38 4.8 ATGTAAACGCTTTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruR
Ortholog function: Transcriptional regulator of fructose utilization, DeoR family
Anoxybacillus flavithermus WK1 Aflv_1478 -24 4.6 ATGTAAGCGATTTAAA
Bacillus amyloliquefaciens FZB42 RBAM_014120 -28 4.5 ATGAATACGTTTCCAA
Bacillus cereus ATCC 14579 BC3720 -46 4.3 TTGTGACCGTTTTCAT
Bacillus licheniformis DSM 13 BLi01652 -29 4.6 ATGAAGGCGTTTCCAA
Bacillus pumilus SAFR-032 BPUM_1334 -30 4.7 ATGAATACGTTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU14380 -29 4.7 ATGAATACGTTTTCAT
Oceanobacillus iheyensis HTE831 OB0840 -113 5 TTGAAAGCGTTTTATT
Position: -64
Score: 5
Sequence: ATTAAAGCGCTTACAA
Locus tag: Exig_1658
Exig_1658 -64 5 ATTAAAGCGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cycB
Ortholog function: Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein
Bacillus clausii KSM-K16 ABC3520 -37 4.6 AAGAAAGCGGTTACTT
Bacillus halodurans C-125 BH2019 -55 4.4 TATAAAACGCTTTCAT
Bacillus pumilus SAFR-032 BPUM_3613 -51 4.8 AAGAAAGCGTTTTCTT
Bacillus subtilis subsp. subtilis str. 168 BSU34160 -39 5 TTTAAAGCGCTTTCAT
Position: -63
Score: 5.1
Sequence: TTGAAAGCGCTAACAG
Locus tag: Exig_1706
Exig_1706 -63 5.1 TTGAAAGCGCTAACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: odhA
Ortholog function: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Bacillus amyloliquefaciens FZB42 RBAM_019130 -101 4.7 TTGGAAGCGTTTTTAT
Bacillus cereus ATCC 14579 BC1252 -101 4.3 AAGAAAACATTTACAT
Bacillus clausii KSM-K16 ABC2114 -63 4.8 TTGTAAGCGCTTGAAA
Bacillus halodurans C-125 BH2206 -64 5 ATGAAAGCGTTATAAA
Bacillus licheniformis DSM 13 BLi02260 -100 4.3 GTGGAAGCGTTTTTAT
Bacillus pumilus SAFR-032 BPUM_1862 -101 4.7 TTGGAAGCGTTTTATT
Bacillus subtilis subsp. subtilis str. 168 BSU19370 -101 4.7 TTGGAAGCGTTTTTAT
Geobacillus kaustophilus HTA426 GK1023 -123 4.1 GTGAAAACGTTTATAC
Oceanobacillus iheyensis HTE831 OB1089 -51 4.3 TTTGAACCGTTTTCAT
Paenibacillus sp. JDR-2 Pjdr2_4724 -242 4.4 ATGAATACGCTTTAAA
Position: -82
Score: 4.2
Sequence: GAGTAAGCGTTTCCAT
Locus tag: Exig_1720
Exig_1720 -82 4.2 GAGTAAGCGTTTCCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: PTS family mannitol-permease II, BC component
Anoxybacillus flavithermus WK1 Aflv_1566 -58 4.5 CTGTAAGCGCTTTAAT
Bacillus amyloliquefaciens FZB42 RBAM_004230 -96 4.6 TTGTAAGCGTTTTATG
Bacillus halodurans C-125 BH3854 -39 4.3 ATGAGAGCGCTTTATT
Bacillus licheniformis DSM 13 BLi00505 -94 4.4 CTGTAAGCGTTTTAAT
Bacillus pumilus SAFR-032 BPUM_0369 -106 4.1 GTGAAAGCGTTTTACG
Bacillus subtilis subsp. subtilis str. 168 BSU03981 -95 4 CTGTAAGCGTTTTAAC
Geobacillus kaustophilus HTA426 GK1948 -54 4.8 TTGTAAGCGTTTTAAG
Oceanobacillus iheyensis HTE831 OB2603 -75 4.4 TTGTAAGCGGATTCCT
Paenibacillus sp. JDR-2 Pjdr2_6226 -33 4.1 AAGAAAGCGATTTTAT
Position: -44
Score: 4.7
Sequence: ATGTAAGCGCTTTTTT
Locus tag: Exig_1797
Exig_1797 -44 4.7 ATGTAAGCGCTTTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndk
Ortholog function: Nucleoside diphosphate kinase (EC 2.7.4.6)
Anoxybacillus flavithermus WK1 Aflv_1096 -104 4.3 ATTAAATCGTTTTCAT
Bacillus amyloliquefaciens FZB42 RBAM_020890 -37 4.5 TTGAAAGCCTATACAT
Bacillus clausii KSM-K16 ABC1890 -70 4.4 TTGTTAGCGTTTTCCT
Bacillus licheniformis DSM 13 BLi02408 -39 4.5 TTGAAAGCCTATACAT
Bacillus pumilus SAFR-032 BPUM_2004 -43 4.3 ATGTAAGCCTATACAT
Bacillus subtilis subsp. subtilis str. 168 BSU22730 -38 4.1 GTGAAAGCCTATACAT
Geobacillus kaustophilus HTA426 GK2209 -105 4.4 TTATTAGCGCTTTCAA
Position: -68
Score: 4.3
Sequence: TAGACAGCGCTTCCAA
Locus tag: Exig_1891
Exig_1891 -68 4.3 TAGACAGCGCTTCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sucC
Ortholog function: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Bacillus amyloliquefaciens FZB42 RBAM_015920 -52 4.8 ATGAAAGCGCAGTCTA
Bacillus licheniformis DSM 13 BLi01829 -53 4.8 ATGAAAGCGCAGTCTA
Bacillus pumilus SAFR-032 BPUM_1507 -57 4.8 ATGAAAGCGCAGTCTA
Bacillus subtilis subsp. subtilis str. 168 BSU16090 -51 4.8 ATGAAAGCGCAGTCTA
Geobacillus kaustophilus HTA426 GK1208 -47 4.2 ATGAAAGCGCTAAGAC
Position: -63
Score: 4.7
Sequence: ATGAAAGCGCTTTTCT
Locus tag: Exig_2158
Exig_2158 -63 4.7 ATGAAAGCGCTTTTCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b558 subunit
Bacillus amyloliquefaciens FZB42 RBAM_025520 -143 4.3 ATGTACACGTTTTCTT
Bacillus cereus ATCC 14579 BC4518 -178 4.3 ATGTATACGTTTTCTT
Bacillus clausii KSM-K16 ABC2664 -190 4.3 TTGAATCCGTTTTCTT
Bacillus licheniformis DSM 13 BLi02994 -143 4.4 ATGTACGCGTTTTCTT
Bacillus pumilus SAFR-032 BPUM_2503 -139 4.2 ATGTACGCGGTTTCTT
Bacillus subtilis subsp. subtilis str. 168 BSU28450 -139 4.4 ATGTACGCGTTTTCTT
Position: -46
Score: 5.2
Sequence: ATGAAAGCGTTTTAAA
Locus tag: Exig_2209
Exig_2209 -46 5.2 ATGAAAGCGTTTTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mmgD
Ortholog function: Citrate synthase (si) (EC 2.3.3.1)
Anoxybacillus flavithermus WK1 Aflv_0504 -107 4.6 ATGTAAGCATTTTCTT
Anoxybacillus flavithermus WK1 Aflv_0504 -107 4.6 ATGTAAGCATTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_026180 -114 4.6 ATGTAAGCATTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_022420 -43 4.6 GTGTAAGCGTTATCTT
Bacillus clausii KSM-K16 ABC1805 -63 4.9 ATGTAAGCGCTTTATT
Bacillus clausii KSM-K16 ABC2715 174 4.6 TTGGAATCGTTTTCAA
Bacillus licheniformis DSM 13 BLi03062 -115 4.6 ATGTAAGCATTTTCTT
Bacillus licheniformis DSM 13 BLi03062 -115 4.6 ATGTAAGCATTTTCTT
Bacillus pumilus SAFR-032 BPUM_2556 -111 4.6 ATGTAAGCATTTTCTT
-69 4.5 TGGATAGCGCTTTCAA
Bacillus pumilus SAFR-032 BPUM_2556 -111 4.6 ATGTAAGCATTTTCTT
-69 4.5 TGGATAGCGCTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU24140 -37 4.9 TTGTAAGCGCTGTCTA
Bacillus subtilis subsp. subtilis str. 168 BSU29140 -114 4.6 ATGTAAGCATTTTCTT
Oceanobacillus iheyensis HTE831 OB2269 -39 4.4 TTGACTGCGCTTTCAA
Position: 9
Score: 4.5
Sequence: TTGAAAGCGCTTCCGG
Locus tag: Exig_2237
Exig_2237 9 4.5 TTGAAAGCGCTTCCGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: acsA
Ortholog function: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Anoxybacillus flavithermus WK1 Aflv_0462 237 4.9 ATGAAAGAGTTTTCAA
Bacillus amyloliquefaciens FZB42 RBAM_026800 -102 4.5 TATAAAGCGTTTTCAA
Bacillus clausii KSM-K16 ABC2760 -65 4.7 TTGAAAACGTTACCTT
0 4.8 ATGAAAGCGCTTCCTG
Bacillus halodurans C-125 BH3234 6 4.4 TTGCAAGCGCTTCCAG
Bacillus licheniformis DSM 13 BLi03119 6 4.7 TTGAAAGCGCTGCCAG
Bacillus pumilus SAFR-032 BPUM_2616 -30 4.7 TTGTAAACGTATGCAA
Bacillus subtilis subsp. subtilis str. 168 BSU29680 -101 4.5 TATAAAGCGTTTTCAA
6 4.8 TTGAAAGCGTTACCAG
Oceanobacillus iheyensis HTE831 OB0022 -36 4.5 TTGTAATCGTTTGCAA
Paenibacillus sp. JDR-2 Pjdr2_3796 -56 5 TTGAAAGCGTATTCTT
Position: -58
Score: 4.9
Sequence: AAGAAAACGTTTTCAT
Locus tag: Exig_2706
Exig_2706 -58 4.9 AAGAAAACGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: treP
Ortholog function: PTS system, trehalose-specific enzyme II, BC component (EC 2.7.1.69)
Bacillus amyloliquefaciens FZB42 RBAM_007970 318 4 GTGAAAACGCTTGCGG
Bacillus cereus ATCC 14579 BC0631 234 4.4 TTGATAACGCTTGCAG
Bacillus halodurans C-125 BH2216 136 4.4 TTGAAAGCCTTGACAT
318 4.4 GTGAAAACGCTTGCTG
Bacillus licheniformis DSM 13 BLi00796 318 4.6 GTGAAAACGCTTGCAG
Bacillus subtilis subsp. subtilis str. 168 BSU07800 318 4.6 GTGAAAACGCTTGCAG
Position: -135
Score: 5.4
Sequence: TTGAAAACGCTTACAA
Locus tag: Exig_2865
Exig_2865 -135 5.4 TTGAAAACGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywcB
Ortholog function: Hypothetical membrane spanning protein
Geobacillus kaustophilus HTA426 GK0929 -37 4.8 TTGAAAACGCTTGAAT
Position: -170
Score: 4.8
Sequence: TTGACAACGCTTTCTT
Locus tag: Exig_2912
Exig_2912 -170 4.8 TTGACAACGCTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sacP
Ortholog function: PTS sucrose-specific enzyme IIBC component
Anoxybacillus flavithermus WK1 Aflv_2785 -147 4.7 ATGAAAGCGGATAAAA
Bacillus amyloliquefaciens FZB42 RBAM_035290 -175 4.7 ACGAAAGCGCTATCAT
-151 5 ATGAAAGCGCATTAAA
Bacillus cereus ATCC 14579 BC0775 -158 4.7 AAGAAAGCGTTGACAA
Bacillus halodurans C-125 BH1856 -170 4.3 GAGAAAGCGTTGACAA
Bacillus licheniformis DSM 13 BLi04017 -154 4.9 ATGAAAGCGTATTAAA
Bacillus pumilus SAFR-032 BPUM_3452 -145 5.1 ATGAAAGCGTAATCAA
Bacillus subtilis subsp. subtilis str. 168 BSU38050 -151 5 ATGAAAGCGTATTCTT
Position: -81
Score: 4.7
Sequence: ATTAAAGCGCTTGCAT
Locus tag: Exig_2995
Exig_2995 -81 4.7 ATTAAAGCGCTTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntR
Ortholog function: Gluconate operon transcriptional repressor
Bacillus licheniformis DSM 13 BLi04286 -81 4.7 ATGAAAGTGTTTGCAT
Bacillus subtilis subsp. subtilis str. 168 BSU40050 -81 4.7 ATGAAAGTGTTTGCAT
Oceanobacillus iheyensis HTE831 OB3190 -79 4.3 ATTCAAGCGTTTACAA
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