Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Macrococcus caseolyticus JCSC5402

Reference regulog properties
Source regulog: CcpA - Staphylococcaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein; Fructose-1,6-diphosphate
Phylum: Firmicutes
Propagated regulon:
Target genome Macrococcus caseolyticus JCSC5402
Orthologous TF(s) MCCL_1413
Regulated genes 27
Built upon 391 sites [see more]
Predicted regulatory interactions in Macrococcus caseolyticus JCSC5402
Locus tag Position Score Sequence
Position: -103
Score: 4.3
Sequence: GTGAAAACGTTTTCGT
Locus tag: MCCL_0079
MCCL_0079 -103 4.3 GTGAAAACGTTTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA2109
Ortholog function: probable amino-acid or metabolite transporter
Staphylococcus aureus subsp. aureus N315 SA2109 -122 4.2 CTGTAAACGATTGCAT
Staphylococcus capitis SK14 STACA0001_1171 -119 4.5 GTGTAATCGATTTCAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1812 -249 5 ATGAAAGCGCATACAT
Staphylococcus haemolyticus JCSC1435 SH0739 -173 4.8 ATGGAAGCGATTTCAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0591 -114 5 ATGTAAACCCTTACAT
Macrococcus caseolyticus JCSC5402 MCCL_0079 -103 4.3 GTGAAAACGTTTTCGT
Position: -65
Score: 4.8
Sequence: TTGTAATCGATTTCAT
Locus tag: MCCL_0348
MCCL_0348 -65 4.8 TTGTAATCGATTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsR2
Ortholog function: transcriptional repressor of ribose operon
Staphylococcus haemolyticus JCSC1435 SH0174 -31 5 ATGTAAGCGGTTACAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1396 -302 5 TAGAAAACGCTTTCAA
-30 5 ATGAAAACGGTTACAT
Macrococcus caseolyticus JCSC5402 MCCL_0348 -65 4.8 TTGTAATCGATTTCAT
-34 4.5 ATGTAATCGGTTACAC
Position: -43
Score: 5
Sequence: ATGAAAACGTTTTCTT
Locus tag: MCCL_0353
MCCL_0353 -43 5 ATGAAAACGTTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mdxE
Ortholog function: putative maltodexrtrin ABC transporter, substrate-binding protein
Macrococcus caseolyticus JCSC5402 MCCL_0353 -43 5 ATGAAAACGTTTTCTT
Position: -82
Score: 4.7
Sequence: TTGTAAAGGCTTTCTT
Locus tag: MCCL_0370
MCCL_0370 -82 4.7 TTGTAAAGGCTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpT
Ortholog function: glycerol-3-phosphate transporter
Staphylococcus aureus subsp. aureus N315 SA0325 -76 4.8 TTGACAACGCTTTCAT
Staphylococcus epidermidis ATCC 12228 SE2047 -85 4.5 TTGACAACGCTTACTT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1820 -70 4.3 ATGGAAGCGTTGTCTT
Macrococcus caseolyticus JCSC5402 MCCL_0370 -82 4.7 TTGTAAAGGCTTTCTT
Position: -324
Score: 4.6
Sequence: ACGAAAGCGTTTACAA
Locus tag: MCCL_0405
MCCL_0405 -324 4.6 ACGAAAGCGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntR
Ortholog function: gluconate operon transcriptional repressor
Staphylococcus aureus subsp. aureus N315 SA2295 -79 4.7 AAGAAAGCGCTTGCAA
Staphylococcus capitis SK14 STACA0001_1009 -83 4.7 AAGAAAGCGCTTGCAA
Staphylococcus epidermidis ATCC 12228 SE2046 -83 4.7 AAGAAAGCGCTTGCAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1950 -53 4.7 ATGTAAGCGGTTGCAA
Staphylococcus haemolyticus JCSC1435 SH0574 -81 4.7 AAGAAAGCGTTTGCAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0410 -83 4.6 TTGCAAGCGCTTGCAA
Macrococcus caseolyticus JCSC5402 MCCL_0405 -325 4.6 AcGAAAGCGtTTaCAa
Position: -94
Score: 4.8
Sequence: TTTTAAACGTTTACAT
Locus tag: MCCL_0434
MCCL_0434 -94 4.8 TTTTAAACGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pflB
Ortholog function: Pyruvate formate lyase
Staphylococcus aureus subsp. aureus N315 SA0218 -59 4.9 ATGAAAACGTTAACAT
Staphylococcus epidermidis ATCC 12228 SE0214 -37 4.8 TTGAAAACGTTAACAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_2017 -58 4.3 GTGAAAACGGTAACAT
Macrococcus caseolyticus JCSC5402 MCCL_0434 -94 4.8 TTTTAAACGTTTACAT
Position: -28
Score: 3.9
Sequence: ATGAAAGTGTTCACAA
Locus tag: MCCL_0452
MCCL_0452 -28 3.9 ATGAAAGTGTTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruR
Ortholog function: transcription repressor of fructose operon, DeoR family
Staphylococcus aureus subsp. aureus N315 SA0653 -43 4 GTGAAAGCGTACTCAT
Staphylococcus capitis SK14 STACA0001_0331 -46 4.3 ATGTAAGCGCACTCAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0346 -44 4.3 ATGTAAGCGGAAACAT
Staphylococcus haemolyticus JCSC1435 SH2196 -45 4.3 ATGTAAGCGTACACAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2019 -44 4.3 AAGAAAGCGTAAACAT
Macrococcus caseolyticus JCSC5402 MCCL_0452 -28 3.9 ATGAAAGTGTTCACAA
Position: -44
Score: 4.7
Sequence: ATGTAAGGGTTTTCTA
Locus tag: MCCL_0582
MCCL_0582 -44 4.7 ATGTAAGGGTTTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rocA
Ortholog function: 1-pyrroline-5-carboxylate dehydrogenase
Staphylococcus aureus subsp. aureus N315 SA2341 -112 4.7 ATGAAAGCGATTGCAA
Staphylococcus capitis SK14 STACA0001_0943 -128 4.7 ATGTAAGCGATTGCAA
Staphylococcus epidermidis ATCC 12228 SE2116 -149 4.9 ATGTAAGCGTTTGCAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0564 -49 4.8 ATGTAAGGGCTTTCTT
Staphylococcus haemolyticus JCSC1435 SH0500 -128 4.7 ATGTAAGCGATTGCAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0311 -101 4.7 ATGTAAGCGATTGCAT
Macrococcus caseolyticus JCSC5402 MCCL_0582 -44 4.7 ATGTAAGGGTTTTCTA
Position: -93
Score: 4.6
Sequence: TTGGTAGCGTTTTCAA
Locus tag: MCCL_0584
MCCL_0584 -93 4.6 TTGGTAGCGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gudB
Ortholog function: NAD-specific glutamate dehydrogenase
Staphylococcus aureus subsp. aureus N315 SA0819 -84 4.5 TTGTAAGGGCTTTAAA
-42 4.3 TTGAAAGCGAAATCAT
Staphylococcus capitis SK14 STACA0001_0168 -84 4.5 TTGTAAACCCTTTAAA
-41 4.3 TTGAAAGCGAAATCAT
Staphylococcus epidermidis ATCC 12228 SE0654 -74 4.1 TTTAAAATGCTTTCAA
-41 4.3 ATGAAAGCGAAATCAT
Staphylococcus haemolyticus JCSC1435 SH1992 -77 4.5 TTGAAAACCCTTTAAA
-35 4.3 ATGAAAGCGAAATCAT
Macrococcus caseolyticus JCSC5402 MCCL_0584 -93 4.6 TTGGTAGCGTTTTCAA
Position: -133
Score: 4.7
Sequence: TTGACAACGTTTACAT
Locus tag: MCCL_0891
MCCL_0891 -133 4.7 TTGACAACGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF
Ortholog function: glycerol uptake facilitator
Staphylococcus aureus subsp. aureus N315 SA1140 -133 4.8 TTGACAACGCTTTCAT
Staphylococcus capitis SK14 STACA0001_1544 -132 4.7 TTGACAACGCTTACAA
Staphylococcus epidermidis ATCC 12228 SE0977 -130 4.7 TTGACAACGCTTACAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0948 -126 4.8 TTGACAACGCTTTCAT
Staphylococcus haemolyticus JCSC1435 SH1614 -128 4.7 TTGACAACGCTTACAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1461 -145 4.7 TTGACAACGCTTACAA
Macrococcus caseolyticus JCSC5402 MCCL_0891 -133 4.7 TTGACAACGTTTACAT
Position: -36
Score: 4
Sequence: ATGTAAAGGCTTTATC
Locus tag: MCCL_1008
MCCL_1008 -36 4 ATGTAAAGGCTTTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: citB
Ortholog function: aconitate hydratase
Staphylococcus aureus subsp. aureus N315 SA1184 -103 4.4 AATTAAGCGTTTTCTA
Staphylococcus capitis SK14 STACA0001_1597 -103 4.4 AATAAAGCGTTTTCTA
Staphylococcus epidermidis ATCC 12228 SE1032 -103 4.4 AATAAAGCGTTTTCTA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0991 -68 4.5 TTGTAATCCCTTACTT
Macrococcus caseolyticus JCSC5402 MCCL_1008 -36 4 ATGTAAAGGCTTTATC
Position: -85
Score: 4.5
Sequence: ATGTAATCGGTTTCTT
Locus tag: MCCL_1319
MCCL_1319 -85 4.5 ATGTAATCGGTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: succinate dehydrogenase cytochrome b subunit
Staphylococcus aureus subsp. aureus N315 SA0994 -235 4.4 GTGGAAGCGTTTTCTA
Staphylococcus capitis SK14 STACA0001_2159 -286 4.4 GTGGAAGCGTTTTCTA
Staphylococcus epidermidis ATCC 12228 SE0840 -270 4.7 ATGGAAGCGTTTTCTA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0765 -291 5 TTGTAAACGCTTTCTA
Staphylococcus haemolyticus JCSC1435 SH1814 -285 4.7 ATGGAAGCGTTTTCTA
-61 4 TTGAAAAGACTTTCTT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1648 -232 4.7 ATGGAAGCGTTTTCTA
Macrococcus caseolyticus JCSC5402 MCCL_1319 -85 4.5 ATGTAATCGGTTTCTT
Position: 0
Score: 4.4
Sequence: GTGAAAGCCATTACAT
Locus tag: MCCL_1362
MCCL_1362 0 4.4 GTGAAAGCCATTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: citZ
Ortholog function: citrate synthase
Staphylococcus aureus subsp. aureus N315 SA1518 -43 4.7 TTGAAAGCCATTTCAT
Staphylococcus capitis SK14 STACA0001_0589 -43 4.4 GTGAAAGCCATTTCAT
Staphylococcus epidermidis ATCC 12228 SE1371 -43 4.7 TTGAAAGCCATTTCAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1301 -42 4.7 ATGAAAGCCATTTCAA
Staphylococcus haemolyticus JCSC1435 SH1230 -42 4.4 TTGGAAGCCATTACAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1071 -42 4.8 ATGAAAGCCATTTCAT
Macrococcus caseolyticus JCSC5402 MCCL_1362 0 4.4 GTGAAAGCCATTACAT
Position: -100
Score: 4.8
Sequence: TTTAAAACGTTTTCAT
Locus tag: MCCL_1365
MCCL_1365 -100 4.8 TTTAAAACGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pfkA
Ortholog function: 6-phosphofructokinase
Staphylococcus aureus subsp. aureus N315 SA1521 -151 4.8 TTTAAAACGTTTACAT
Staphylococcus capitis SK14 STACA0001_0592 -107 4.8 TTTAAAACGTTTACAT
Staphylococcus epidermidis ATCC 12228 SE1374 -152 4.8 TTTAAAACGTTTACAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1304 -103 4.6 TATAAAACGTTTACAT
Staphylococcus haemolyticus JCSC1435 SH1226 -152 4.6 TATAAAACGTTTACAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1068 -148 4.8 TTTAAAACGTTTACAT
Macrococcus caseolyticus JCSC5402 MCCL_1365 -100 4.8 TTTAAAACGTTTTCAT
Position: -62
Score: 4.7
Sequence: ATGAAAGCGTTATCTT
Locus tag: MCCL_1408
MCCL_1408 -62 4.7 ATGAAAGCGTTATCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhs
Ortholog function: formyltetrahydrofolate synthetase
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1031 -147 4.4 TTGAAAGCGCTATCTC
Macrococcus caseolyticus JCSC5402 MCCL_1408 -62 4.7 ATGAAAGCGTTATCTT
Position: 0
Score: 4.7
Sequence: ATGAAAACGATTACAC
Locus tag: MCCL_1409
MCCL_1409 0 4.7 ATGAAAACGATTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: acsA
Ortholog function: acetyl-CoA synthetase
Staphylococcus aureus subsp. aureus N315 SA1554 -37 4.7 AAGAAAGCGTTTTCAC
Staphylococcus capitis SK14 STACA0001_0626 -35 4.9 AAGAAAGCGATTTCAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1338 -34 5 ATGAAAACGATTTCAA
Staphylococcus haemolyticus JCSC1435 SH1189 -36 4.9 AAGAAAGCGATTTCAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1030 -33 4.5 AAGCAAGCGATTTCAT
Macrococcus caseolyticus JCSC5402 MCCL_1409 0 4.7 ATGAAAACGATTACAC
Position: -25
Score: 4.1
Sequence: AATAAAACGTTTTCAG
Locus tag: MCCL_1413
MCCL_1413 -25 4.1 AATAAAACGTTTTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccpA
Ortholog function: catabolite control protein A
Staphylococcus aureus subsp. aureus N315 SA1557 -71 4.6 AATAAAACGTTTACAA
Staphylococcus capitis SK14 STACA0001_0629 -26 4.3 AATGAAACGCTTACAA
Staphylococcus epidermidis ATCC 12228 SE1409 -71 4.6 AATAAAACGTTTACAA
Staphylococcus haemolyticus JCSC1435 SH1186 -26 4.6 AATAAAACGCTTACAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1027 -26 4.8 AAGAAATCGTTTTCAA
Macrococcus caseolyticus JCSC5402 MCCL_1413 -25 4.1 AATAAAACGTTTTCAG
Position: -52
Score: 4.9
Sequence: TTTAAAGCGTTTTCAT
Locus tag: MCCL_1451
MCCL_1451 -52 4.9 TTTAAAGCGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putA
Ortholog function: proline dehydrogenase
Staphylococcus aureus subsp. aureus N315 SA1585 -71 4.7 ATGAAAACGCTTTCTC
Staphylococcus capitis SK14 STACA0001_0658 -81 4.7 ATGTAAACGCTTTCTC
Staphylococcus epidermidis ATCC 12228 SE1437 -80 5.1 ATGTAAACGCTTTCTT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1371 -71 4.9 TTGTTAACGTTTTCAT
Staphylococcus haemolyticus JCSC1435 SH1157 -81 5 TTGAAAACGCTTTCTA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0999 -80 5 TTGTAAACGATTTCAT
Macrococcus caseolyticus JCSC5402 MCCL_1451 -52 4.9 TTTAAAGCGTTTTCAT
Position: -94
Score: 4.9
Sequence: ATGAAAACGCTTAAAT
Locus tag: MCCL_1639
MCCL_1639 -94 4.9 ATGAAAACGCTTAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putP
Ortholog function: high affinity proline permease
Macrococcus caseolyticus JCSC5402 MCCL_1639 -94 4.9 ATGAAAACGCTTAAAT
Position: -82
Score: 4.8
Sequence: TTGTAATCGATTTCAT
Locus tag: MCCL_1800
MCCL_1800 -82 4.8 TTGTAATCGATTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gudP
Ortholog function: glucarate transporter
Staphylococcus aureus subsp. aureus N315 SA2300 -148 4.7 TTGTAAACGCTTTCCA
Staphylococcus capitis SK14 STACA0001_1003 -166 4 TTGTAACCGTTTTCGC
Staphylococcus epidermidis ATCC 12228 SE2056 -164 4.6 TTGTAACCGTTTACAC
Staphylococcus carnosus subsp. carnosus TM300 Sca_1960 -94 4.7 TTGTAAACGATTTCTA
Staphylococcus haemolyticus JCSC1435 SH0566 -241 5 TTGAAAACGATTTCAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0401 -86 5.1 TTGTAAGCGATTTCAT
Macrococcus caseolyticus JCSC5402 MCCL_1800 -82 4.8 TTGTAATCGATTTCAT
Position: -34
Score: 5.1
Sequence: AAGAAAGCGTTTTCAT
Locus tag: MCCL_1807
MCCL_1807 -34 5.1 AAGAAAGCGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nhaC
Ortholog function: Na+/H+ antiporter NnaC homolog
Staphylococcus carnosus subsp. carnosus TM300 Sca_2258 -64 4.8 TTGAAAGCGGTTTCTT
Macrococcus caseolyticus JCSC5402 MCCL_1807 -34 5.1 AAGAAAGCGTTTTCAT
Position: -94
Score: 4.3
Sequence: ATGTAAGCGTTTCTAA
Locus tag: MCCL_1856
MCCL_1856 -94 4.3 ATGTAAGCGTTTCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA0511
Ortholog function: uncharacterized epimerase/dehydratase
Staphylococcus aureus subsp. aureus N315 SA0511 -97 4.4 AAGAAAGCGCTTTTAT
Staphylococcus capitis SK14 STACA0001_0477 -98 4.4 AAGAAAGCGCTTTTAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0213 -144 4.4 ATGTAAGCGCTTTACT
Staphylococcus haemolyticus JCSC1435 SH2450 -101 4.4 AAGAAAGCGCTTTTAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2164 -164 4.3 TTGAAATCGCAATCAA
-98 3.9 AATAAAGCGTTTTTAT
Macrococcus caseolyticus JCSC5402 MCCL_1856 -94 4.3 ATGTAAGCGTTTCTAA
Position: -70
Score: 4
Sequence: TGTTTAGCGCTTTCAT
Locus tag: MCCL_1890
MCCL_1890 -70 4 TGTTTAGCGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupC
Ortholog function: pyrimidine nucleoside transporter
Staphylococcus aureus subsp. aureus N315 SA0479 -63 4.4 ATGTTAGCCCTTCCAT
Staphylococcus capitis SK14 STACA0001_0514 -61 4.3 ATGTTAGCGCGTTCAT
Staphylococcus epidermidis ATCC 12228 SE0283 -63 4.2 ATGTTAGCGTGTTCAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2235 -65 4.2 ATGTAAGTGCTATCAA
Macrococcus caseolyticus JCSC5402 MCCL_1890 -70 4 TGTTTAGCGCTTTCAT
Position: -49
Score: 4.4
Sequence: TTGAAAACCCTTTCAG
Locus tag: MCCL_1938
MCCL_1938 -49 4.4 TTGAAAACCCTTTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: treP
Ortholog function: phosphotransferase system trehalose-specific enzyme IIBC component homolog
Staphylococcus aureus subsp. aureus N315 SA0432 -68 4.9 TTGAAAGCCTTTACAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0108 -71 4.9 TTGAAAGCCTTTACAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0109 -71 4.9 TTGAAAGCCTTTACAT
Staphylococcus haemolyticus JCSC1435 SH2538 -69 4.9 ATGAAAGCCTTTACAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2282 -81 4.9 ATGAAAACCTTTACAA
Macrococcus caseolyticus JCSC5402 MCCL_1938 -49 4.4 TTGAAAACCCTTTCAG
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