Propagation of Rex regulog to Staphylococcus aureus RF122
| Source regulog: | Rex - Staphylococcaceae |
| Regulator type: | Transcription factor |
| Regulator family: | Rex |
| Regulation mode: | repressor |
| Biological process: | Energy metabolism |
| Effector: | NADH |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Staphylococcus aureus RF122 |
| Orthologous TF(s) | SAB1930c |
| Regulated genes | 12 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -79
Score: 4.9 Sequence: CTGTGATTTTTTACACAA
Locus tag: SAB0018
|
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| SAB0018 | -79 | 4.9 | CTGTGATTTTTTACACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: vicR | ||||
| Ortholog function: cell wall homeostasis regulation two-component system, response regulator | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0017 | -79 | 4.9 | CTGTGATTTTTTACACAA |
|
Position: -39
Score: 6.3 Sequence: TTGTGAAATAATTCACAA
Locus tag: SAB0089
|
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| SAB0089 | -39 | 6.3 | TTGTGAAATAATTCACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10) | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0143 | -39 | 6.3 | TTGTGAAATAATTCACAA |
| Staphylococcus epidermidis ATCC 12228 | SE0506 | -38 | 6.1 | TTGTGAATTATTTCACAA |
|
Position: -96
Score: 6 Sequence: ATGTGAAAAAAATCACAA
Locus tag: SAB0164
|
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| SAB0164 | -96 | 6 | ATGTGAAAAAAATCACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pflB | ||||
| Ortholog function: Pyruvate formate-lyase (EC 2.3.1.54) | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0218 | -96 | 6 | ATGTGAAAAAAATCACAA |
| Staphylococcus epidermidis ATCC 12228 | SE0214 | -74 | 5.8 | ATGTGAAATTAATCACAT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_2017 | -93 | 5.3 | AAGTGATTTTTTTCACAA |
| Macrococcus caseolyticus JCSC5402 | MCCL_0434 | -74 | 4.7 | TTGTGATACTTTTCACGT |
|
Position: -227
Score: 5.9 Sequence: ATGTGAAATAAATCACAT
Position: -169
Score: 6 Sequence: ATGTGAAATAAATCACAA
Locus tag: SAB0180
|
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| SAB0180 | -227 | 5.9 | ATGTGAAATAAATCACAT | |
| -169 | 6 | ATGTGAAATAAATCACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ldh | ||||
| Ortholog function: L-lactate dehydrogenase (EC:1.1.1.27) | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0232 | -227 | 6 | ATGTGAAATAAATCACAA |
| -169 | 6 | ATGTGAAATAAATCACAA | ||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_1369 | -55 | 5.5 | ATGTGAAATAAATCATAT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1001 | -113 | 6.1 | TTGTGAAATAAATCACAA |
| -55 | 6.1 | TTGTGAAATAAATCACAA | ||
| Macrococcus caseolyticus JCSC5402 | MCCL_0163 | -142 | 6.1 | TTGTGAAAATAATCACAA |
|
Position: -72
Score: 6.2 Sequence: TTGTGAAATTATTCACAA
Locus tag: SAB0242c
|
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| SAB0242c | -72 | 6.2 | TTGTGAAATTATTCACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nirC | ||||
| Ortholog function: Formate/nitrite family of transporters | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0293 | -72 | 6.2 | TTGTGAAATTATTCACAA |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_1814 | -75 | 5.9 | TTGTGAAAGTATTCACAA |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP0590 | -71 | 6.2 | TTGTGAAAATATTCACAA |
|
Position: -306
Score: 6 Sequence: TTGTGAATTAATTCACAT
Locus tag: SAB0557
|
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| SAB0557 | -306 | 6 | TTGTGAATTAATTCACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adh1/adhB | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1), Zn-dependent | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0562 | -306 | 6 | TTGTGAATTAATTCACAT |
|
Position: -38
Score: 6.2 Sequence: TTGTGAAATTATTCACAA
Locus tag: SAB1304c
|
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| SAB1304c | -38 | 6.2 | TTGTGAAATTATTCACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ald1 | ||||
| Ortholog function: Alanine dehydrogenase (EC 1.4.1.1) | ||||
| Staphylococcus aureus subsp. aureus N315 | SA1272 | -38 | 6.2 | TTGTGAAATTATTCACAA |
|
Position: -168
Score: 4.6 Sequence: ATGTTCACTTTTTCACAA
Locus tag: SAB2267c
|
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| SAB2267c | -168 | 4.6 | ATGTTCACTTTTTCACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narK | ||||
| Ortholog function: nitrate-nitrite antiporter | ||||
| Staphylococcus aureus subsp. aureus N315 | SA2176 | -168 | 4.6 | ATGTTCACTTTTTCACAA |
| Staphylococcus capitis SK14 | STACA0001_1087 | -156 | 4.9 | ATGTTCATTTTTTCACAA |
| Staphylococcus epidermidis ATCC 12228 | SE1968 | -149 | 4.9 | ATGTTCATATTTTCACAA |
| Staphylococcus haemolyticus JCSC1435 | SH0661 | -125 | 4.9 | ATGTTCATTTTTTCACAA |
| Macrococcus caseolyticus JCSC5402 | MCCL_0144 | -73 | 5.1 | ATGTTAAACTTATCACAA |
|
Position: -46
Score: 5.3 Sequence: ATGTGATTCTTTTCACAA
Locus tag: SAB2281c
|
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| SAB2281c | -46 | 5.3 | ATGTGATTCTTTTCACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nirR | ||||
| Ortholog function: Sirohydrochlorin ferrochelatase (EC 4.99.1.4) | ||||
| Staphylococcus aureus subsp. aureus N315 | SA2189 | -64 | 5.3 | ATGTGATTCTTTTCACAA |
| Staphylococcus capitis SK14 | STACA0001_1076 | -64 | 6 | ATGTGAATAAAATCACAA |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_1899 | -64 | 5.7 | TTGTGAATACATTCACAT |
| Macrococcus caseolyticus JCSC5402 | MCCL_1342 | -91 | 5.8 | ATGTGAACATATTCACAA |
|
Position: -185
Score: 6 Sequence: TTGTGAAAAATATCACAA
Locus tag: SAB2397c
|
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| SAB2397c | -185 | 6 | TTGTGAAAAATATCACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: frp | ||||
| Ortholog function: NAD(P)H-flavin oxidoreductase | ||||
| Staphylococcus aureus subsp. aureus N315 | SA2311 | -185 | 6 | TTGTGAAAAATATCACAA |
| Staphylococcus capitis SK14 | STACA0001_0985 | -197 | 5.8 | TTGTGAAAGTTTTCACAA |
| Staphylococcus epidermidis ATCC 12228 | SE2073 | -208 | 4.9 | TAGTAAAAACATTCACAA |
| -164 | 5.3 | ATGTGATTTAATTCACTA | ||
| Staphylococcus haemolyticus JCSC1435 | SH0546 | -182 | 6.2 | TTGTGAATTTATTCACAA |
| -133 | 5.6 | TTGTTAAAAAATTCACAT | ||
|
Position: -39
Score: 5.9 Sequence: TTGTGATATTTTTCACAA
Locus tag: SAB2398
|
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| SAB2398 | -39 | 5.9 | TTGTGATATTTTTCACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ddh | ||||
| Ortholog function: D-lactate dehydrogenase (EC 1.1.1.28) | ||||
| Staphylococcus aureus subsp. aureus N315 | SA2312 | -39 | 5.9 | TTGTGATATTTTTCACAA |
| Staphylococcus capitis SK14 | STACA0001_0984 | -119 | 5.8 | TTGTGAAAACTTTCACAA |
| Staphylococcus epidermidis ATCC 12228 | SE2074 | -100 | 5.5 | TAGTGAATTAAATCACAT |
| -56 | 4.9 | TTGTGAATGTTTTTACTA | ||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_2121 | -81 | 6 | TTGTGAATATATTCACAT |
| Staphylococcus haemolyticus JCSC1435 | SH0545 | -203 | 5.5 | ATGTGAATTTTTTAACAA |
| -154 | 6.2 | TTGTGAATAAATTCACAA | ||
|
Position: -79
Score: 5.8 Sequence: ATGTGAATATAATCACAT
Locus tag: SAB2510c
|
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| SAB2510c | -79 | 5.8 | ATGTGAATATAATCACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: arcA | ||||
| Ortholog function: Arginine deiminase (EC 3.5.3.6) | ||||
| Staphylococcus aureus subsp. aureus N315 | SA2428 | -79 | 5.8 | ATGTGAATATAATCACAT |
| Staphylococcus capitis SK14 | STACA0001_1845 | -77 | 5.9 | TTGTGAATATAATCACAT |
| Staphylococcus epidermidis ATCC 12228 | SE2217 | -76 | 4.8 | ATGTGATAATCATCACGA |