Propagation of CodY regulog to Staphylococcus carnosus subsp. carnosus TM300
| Source regulog: | CodY - Staphylococcaceae |
| Regulator type: | Transcription factor |
| Regulator family: | CodY |
| Regulation mode: | repressor |
| Biological process: | Amino acid metabolism |
| Effector: | Branched-chain amino acids |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Staphylococcus carnosus subsp. carnosus TM300 |
| Orthologous TF(s) | Sca_0890 |
| Regulated genes | 67 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -257
Score: 4.4 Sequence: AAATGTCAGAATTTT
Locus tag: Sca_0010
|
||||
| Sca_0010 | -257 | 4.4 | AAATGTCAGAATTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtnE | ||||
| Ortholog function: transaminase MtnE involved in methionine biosynthesis via salvage pathway | ||||
| Staphylococcus aureus subsp. aureus N315 | SA2347 | -205 | 4.8 | ATTAATCTGAAAATT |
| Staphylococcus capitis SK14 | STACA0001_0934 | -212 | 4.2 | AAATGTTTGAAAATA |
| -93 | 4.6 | ACTTATCTGAAAATT | ||
| Staphylococcus epidermidis ATCC 12228 | SE2122 | -61 | 4.4 | TTATTTCAGAAAATT |
| -52 | 4.5 | AAAATTCTAACTATT | ||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0010 | -257 | 4.4 | AAATGTCAGAATTTT |
| Staphylococcus haemolyticus JCSC1435 | SH0492 | -253 | 4.5 | ATAAATCTGAAAATT |
| -244 | 4.4 | AAAATTATAAATATT | ||
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP0294 | -203 | 4.3 | AATATTCTGATAAAA |
| Macrococcus caseolyticus JCSC5402 | MCCL_0180 | -222 | 4.8 | AATATTCTGAATACT |
|
Position: -192
Score: 5.1 Sequence: AATTTTCAGAATAAT
Position: -115
Score: 4.9 Sequence: AATTTTTTGAATTTT
Locus tag: Sca_0015
|
||||
| Sca_0015 | -192 | 5.1 | AATTTTCAGAATAAT | |
| -115 | 4.9 | AATTTTTTGAATTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SA0348 | ||||
| Ortholog function: putative transcriptional regulator | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0348 | -176 | 5.1 | ATTATTCAGAAAATT |
| Staphylococcus capitis SK14 | STACA0001_1417 | -209 | 4.9 | ACTTTTCTGAAAATT |
| -75 | 4.8 | AATTTTTAAAATAAT | ||
| Staphylococcus epidermidis ATCC 12228 | SE2378 | -210 | 5.1 | ATTTTTCTGAAAATT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0015 | -192 | 5.1 | AATTTTCAGAATAAT |
| -115 | 4.9 | AATTTTTTGAATTTT | ||
| Staphylococcus haemolyticus JCSC1435 | SH2634 | -279 | 4.9 | ACTTTTCTGAAAATT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP2412 | -127 | 4.6 | ACTTATCTGAAAATT |
|
Position: -34
Score: 4.3 Sequence: AATAATATAAATATT
Locus tag: Sca_0040
|
||||
| Sca_0040 | -34 | 4.3 | AATAATATAAATATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SE2356 | ||||
| Ortholog function: 2-oxo-hepta-3-ene-1,7-dioate hydratase | ||||
| Staphylococcus capitis SK14 | STACA0001_1448 | -29 | 4.8 | AATTTTCAGATATTT |
| Staphylococcus epidermidis ATCC 12228 | SE2356 | -32 | 5.1 | AATTTTCAGATAATT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0040 | -34 | 4.3 | AATAATATAAATATT |
| Staphylococcus haemolyticus JCSC1435 | SH2591 | -28 | 4.8 | AATTTTCAGATATTT |
|
Position: -140
Score: 4.3 Sequence: AATATTTATATTATT
Locus tag: Sca_0041
|
||||
| Sca_0041 | -140 | 4.3 | AATATTTATATTATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SA0367 | ||||
| Ortholog function: putative NADPH-flavin oxidoreductase | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0367 | -121 | 4.2 | AATATTTTTAAAAGT |
| Staphylococcus capitis SK14 | STACA0001_1449 | -145 | 4.8 | AAATATCTGAAAATT |
| Staphylococcus epidermidis ATCC 12228 | SE2355 | -114 | 5.1 | AATTATCTGAAAATT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0041 | -140 | 4.3 | AATATTTATATTATT |
| Staphylococcus haemolyticus JCSC1435 | SH2590 | -144 | 4.8 | AAATATCTGAAAATT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP2331 | -193 | 4.3 | AATAATTTAACTATT |
|
Position: -80
Score: 4.6 Sequence: TATTTTCAGACAATT
Locus tag: Sca_0058
|
||||
| Sca_0058 | -80 | 4.6 | TATTTTCAGACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cysH | ||||
| Ortholog function: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase | ||||
| Staphylococcus capitis SK14 | STACA0001_1812 | -72 | 4.7 | ATTATTCTGACAATT |
| Staphylococcus epidermidis ATCC 12228 | SE2181 | -69 | 4.7 | ATTATTCTGACAATT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0058 | -80 | 4.6 | TATTTTCAGACAATT |
| Staphylococcus haemolyticus JCSC1435 | SH0413 | -69 | 4.7 | ATTATTCTGACAATT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP2409 | -80 | 4.5 | TATTTTCAAATAATT |
|
Position: -68
Score: 4.6 Sequence: ATTATTCAGAAAATA
Locus tag: Sca_0065
|
||||
| Sca_0065 | -68 | 4.6 | ATTATTCAGAAAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: butA | ||||
| Ortholog function: acetoin reductase | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0122 | -102 | 4.7 | AAATATCTGAATATT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0065 | -68 | 4.6 | ATTATTCAGAAAATA |
|
Position: -113
Score: 4.7 Sequence: AATTTTCAGATTTTT
Position: -39
Score: 4.5 Sequence: ATTATTCTAATTATT
Locus tag: Sca_0104
|
||||
| Sca_0104 | -113 | 4.7 | AATTTTCAGATTTTT | |
| -39 | 4.5 | ATTATTCTAATTATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltC | ||||
| Ortholog function: transcription activator of glutamate synthase operon | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0429 | -169 | 4.4 | CTTTTTTAGAATATT |
| -160 | 4.3 | AATATTCTGATATTA | ||
| Staphylococcus capitis SK14 | STACA0001_1493 | -179 | 5 | AATTTTCTGACAATT |
| -41 | 4.6 | AAATTTTAGAATTTT | ||
| Staphylococcus epidermidis ATCC 12228 | SE2313 | -171 | 5 | AATTTTCTGACAATT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0104 | -113 | 4.7 | AATTTTCAGATTTTT |
| -39 | 4.5 | ATTATTCTAATTATT | ||
| Staphylococcus haemolyticus JCSC1435 | SH2541 | -138 | 5.4 | AATTTTCAGAAAATT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP2285 | -118 | 5 | AAAATTCTGAAAATT |
|
Position: -117
Score: 4.5 Sequence: AATAATTAGAATAAT
Position: -43
Score: 4.7 Sequence: AAAAATCTGAAAATT
Locus tag: Sca_0105
|
||||
| Sca_0105 | -117 | 4.5 | AATAATTAGAATAAT | |
| -43 | 4.7 | AAAAATCTGAAAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltB | ||||
| Ortholog function: glutamate synthase large subunit | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0430 | -35 | 4.3 | TAATATCAGAATATT |
| -26 | 4.4 | AATATTCTAAAAAAG | ||
| Staphylococcus capitis SK14 | STACA0001_1494 | -174 | 4.6 | AAAATTCTAAAATTT |
| -36 | 5 | AATTGTCAGAAAATT | ||
| Staphylococcus epidermidis ATCC 12228 | SE2312 | -35 | 5 | AATTGTCAGAAAATT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0105 | -117 | 4.5 | AATAATTAGAATAAT |
| -43 | 4.7 | AAAAATCTGAAAATT | ||
| Staphylococcus haemolyticus JCSC1435 | SH2540 | -34 | 5.4 | AATTTTCTGAAAATT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP2284 | -34 | 5 | AATTTTCAGAATTTT |
|
Position: -92
Score: 4.8 Sequence: AATTTTCTAAAAACT
Locus tag: Sca_0215
|
||||
| Sca_0215 | -92 | 4.8 | AATTTTCTAAAAACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ilvE | ||||
| Ortholog function: branched-chain amino acid aminotransferase | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0512 | -92 | 5.2 | AATTTTTAGAAAATT |
| Staphylococcus capitis SK14 | STACA0001_0476 | -101 | 4.4 | TTTATTTTGAATATT |
| -92 | 4.7 | AATATTTAGAAAACT | ||
| Staphylococcus epidermidis ATCC 12228 | SE0318 | -99 | 4.1 | TCTATTTTGAATATT |
| -90 | 5.2 | AATATTTAGAAAATT | ||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0215 | -101 | 4.5 | ATTTTTTTAAATTTT |
| -92 | 4.8 | AATTTTCTAAAAACT | ||
| Staphylococcus haemolyticus JCSC1435 | SH2449 | -91 | 5.2 | AATTTTTAGAAAATT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP2163 | -86 | 5.2 | AATTTTTTGAAAATT |
| Macrococcus caseolyticus JCSC5402 | MCCL_1855 | -85 | 4.8 | AATTTTCTAAAAACT |
|
Position: -91
Score: 5.2 Sequence: AATATTCAGAATATT
Locus tag: Sca_0238
|
||||
| Sca_0238 | -91 | 5.2 | AATATTCAGAATATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sca_0238 | ||||
| Ortholog function: hypothetical protein | ||||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0238 | -91 | 5.2 | AATATTCAGAATATT |
| -82 | 4.5 | AATATTTAAAATATA | ||
|
Position: -61
Score: 5 Sequence: AATTTTCAAAAAAAT
Locus tag: Sca_0240
|
||||
| Sca_0240 | -61 | 5 | AATTTTCAAAAAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SE0357 | ||||
| Ortholog function: hypothetical protein | ||||
| Staphylococcus capitis SK14 | STACA0001_0445 | -33 | 4.4 | TAAATTCAAAATATT |
| -24 | 5 | AATATTTTAAAAATT | ||
| Staphylococcus epidermidis ATCC 12228 | SE0357 | -139 | 4.8 | AATTTTAAAAAAATT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0240 | -61 | 5 | AATTTTCAAAAAAAT |
| Staphylococcus haemolyticus JCSC1435 | SH2406 | -248 | 4.5 | AATTTTTTAACATTT |
|
Position: -127
Score: 4.8 Sequence: AAATATCTGAAAATT
Locus tag: Sca_0283
|
||||
| Sca_0283 | -127 | 4.8 | AAATATCTGAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gabT | ||||
| Ortholog function: 4-aminobutyrate aminotransferase | ||||
| Staphylococcus aureus subsp. aureus N315 | SA2397 | -136 | 4 | AAAATTCTTAATTAT |
| -127 | 4.5 | AATTATCAGAATATA | ||
| Staphylococcus capitis SK14 | STACA0001_0892 | -175 | 4.7 | AATATTTTAATAATT |
| -166 | 4.3 | ATAATTCAGAAAATA | ||
| Staphylococcus epidermidis ATCC 12228 | SE2148 | -164 | 4.6 | AATATTCTAAATTAT |
| -155 | 4.6 | AATTATCAGAAAATA | ||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0283 | -127 | 4.8 | AAATATCTGAAAATT |
| Staphylococcus haemolyticus JCSC1435 | SH0459 | -145 | 4.6 | ATTATTCAGAAAATA |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP0353 | -218 | 4.6 | ATTTTTCAGAATATA |
|
Position: -120
Score: 4.8 Sequence: AATTTTCAGAATTAT
Locus tag: Sca_0294
|
||||
| Sca_0294 | -120 | 4.8 | AATTTTCAGAATTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SA0601 | ||||
| Ortholog function: hypothetical protein | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0601 | -400 | 5 | AAAATTCAGAATATT |
| -391 | 4.1 | AATATTTTTAATTAT | ||
| Staphylococcus capitis SK14 | STACA0001_0382 | -211 | 5 | AAAATTCAGAATATT |
| Staphylococcus epidermidis ATCC 12228 | SE0420 | -206 | 5 | AAAATTCAGAATATT |
| -197 | 4.1 | AATATTTAAATTTAT | ||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0294 | -120 | 4.8 | AATTTTCAGAATTAT |
| Staphylococcus haemolyticus JCSC1435 | SH2248 | -172 | 5 | AAAATTCAGAAAATT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP2074 | -166 | 4.8 | AAATTTCAGAATTTT |
|
Position: -114
Score: 5.3 Sequence: AATATTCTGAAAATT
Position: -88
Score: 4.5 Sequence: TATTTTAAGAAAATT
Locus tag: Sca_0374
|
||||
| Sca_0374 | -114 | 5.3 | AATATTCTGAAAATT | |
| -88 | 4.5 | TATTTTAAGAAAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tppB | ||||
| Ortholog function: di-tripepride ABC transporter | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0682 | -112 | 4.6 | AATATTCTCAATATT |
| -103 | 4.1 | AATATTTTTATTTTT | ||
| Staphylococcus capitis SK14 | STACA0001_0301 | -124 | 4.3 | AATTGACTGAATATT |
| -115 | 4.5 | AATATTCATATTATT | ||
| -98 | 4.8 | TATTTTTTGAAAATT | ||
| Staphylococcus epidermidis ATCC 12228 | SE0509 | -107 | 4 | CTTTTTTTAAATTTT |
| -98 | 5.2 | AATTTTTTGAAAATT | ||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0374 | -114 | 5.3 | AATATTCTGAAAATT |
| -88 | 4.5 | TATTTTAAGAAAATT | ||
| Staphylococcus haemolyticus JCSC1435 | SH2166 | -102 | 5 | AAATTTCTAAAAATT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1991 | -118 | 4.1 | AAATAACAGAATATT |
| -109 | 4.6 | AATATTCTCAATATT | ||
| Macrococcus caseolyticus JCSC5402 | MCCL_0478 | -117 | 4.6 | AACTTTTTGAAAATT |
| -36 | 5.3 | AATTTTCAGAATATT | ||
|
Position: -53
Score: 5 Sequence: AATATTCAGAAATTT
Locus tag: Sca_0418
|
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| Sca_0418 | -53 | 5 | AATATTCAGAAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: brnQ2 | ||||
| Ortholog function: branched-chain amino acid transport system | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0294 | -55 | 4.5 | ATTTTTCAGATTTTT |
| -46 | 4.5 | ATTTTTTAAATTATT | ||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0418 | -53 | 5 | AATATTCAGAAATTT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP2299 | -112 | 4.3 | AATACTTTAAATATT |
| -103 | 4.1 | AATATTATAAATTAT | ||
| -94 | 4.5 | AATTATCTGACATTT | ||
|
Position: -32
Score: 4.2 Sequence: AATTATTTTAAATTT
Position: 8
Score: 4 Sequence: AATTATTAGTATTTT
Locus tag: Sca_0457
|
||||
| Sca_0457 | -32 | 4.2 | AATTATTTTAAATTT | |
| 8 | 4 | AATTATTAGTATTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: metQ | ||||
| Ortholog function: Methionine ABC transporter, methionine-binding lipoprotein | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0771 | -272 | 4.6 | ATTTGTTAGAAAATT |
| -263 | 4.2 | AAAATTTAAAATAGT | ||
| Staphylococcus capitis SK14 | STACA0001_0216 | -272 | 4.6 | ATTTGTTAGAAAATT |
| -263 | 4.4 | AAAATTTAAAATAAT | ||
| Staphylococcus epidermidis ATCC 12228 | SE0602 | -275 | 4.6 | ATTTGTTAGAAAATT |
| -266 | 4.4 | AAAATTTAAAATAAT | ||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0457 | -282 | 4.7 | ATTTATTAGAAAATT |
| -273 | 4.2 | AAAATTTAAAATAGT | ||
| Staphylococcus haemolyticus JCSC1435 | SH2045 | -261 | 4.1 | AAAAGTTAAAATAAT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1864 | -274 | 4.6 | ATTTGTTAGAAAATT |
| -265 | 4.4 | AAAATTTAAAATAAT | ||
|
Position: -33
Score: 4.5 Sequence: AAAATTCTAACTATT
Locus tag: Sca_0569
|
||||
| Sca_0569 | -33 | 4.5 | AAAATTCTAACTATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argG | ||||
| Ortholog function: argininosuccinate synthase | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0822 | -32 | 4.6 | AATATTCAGATAACT |
| Staphylococcus capitis SK14 | STACA0001_0165 | -33 | 5 | AAAATTCTGAAAATT |
| Staphylococcus epidermidis ATCC 12228 | SE0657 | -180 | 4.5 | AATTTACAGAAATTT |
| -171 | 4.3 | AAATTTTAAAATATA | ||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0569 | -33 | 4.5 | AAAATTCTAACTATT |
| Staphylococcus haemolyticus JCSC1435 | SH1989 | -31 | 5.1 | AATTTTCAGAAAAAT |
|
Position: -113
Score: 5.2 Sequence: AATATTCTAAAAATT
Position: -56
Score: 4.9 Sequence: ATATTTCTGAAAATT
Locus tag: Sca_0588
|
||||
| Sca_0588 | -113 | 5.2 | AATATTCTAAAAATT | |
| -56 | 4.9 | ATATTTCTGAAAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: oppB | ||||
| Ortholog function: oligopeptide ABC transporter permease protein OppB | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0845 | -66 | 4.7 | AGATTTCAGAAAATT |
| Staphylococcus capitis SK14 | STACA0001_0146 | -36 | 4.2 | AATATACATAATATT |
| -27 | 4.6 | AATATTCTGAAAAAA | ||
| Staphylococcus epidermidis ATCC 12228 | SE0680 | -63 | 4.9 | ATATTTCTGAAAATT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0588 | -113 | 5.2 | AATATTCTAAAAATT |
| -65 | 4.2 | AATATTAAAATATTT | ||
| -56 | 4.9 | ATATTTCTGAAAATT | ||
| Staphylococcus haemolyticus JCSC1435 | SH1970 | -116 | 4.7 | AATTTTGTGAAAATT |
| -60 | 4.9 | ATATTTCTGAAAATT | ||
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1794 | -56 | 4.8 | ATATTTCTGAATATT |
| Macrococcus caseolyticus JCSC5402 | MCCL_0605 | -186 | 4.8 | AATTTTTAAAAAAAT |
| -132 | 4.8 | AATCTTCTGAAAATT | ||
|
Position: -116
Score: 5 Sequence: AATATTCAGAATTTT
Locus tag: Sca_0637
|
||||
| Sca_0637 | -116 | 5 | AATATTCAGAATTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hisZ | ||||
| Ortholog function: ATP phosphoribosyltransferase regulatory subunit | ||||
| Staphylococcus aureus subsp. aureus N315 | SA2472 | -142 | 4.6 | AATTTTCTGAAAAAG |
| Staphylococcus epidermidis ATCC 12228 | SE0270 | -115 | 5.1 | AATTTTCTGAAAAAT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0637 | -125 | 4.2 | ATTTTTATTAATATT |
| -116 | 5 | AATATTCAGAATTTT | ||
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP0431 | -109 | 4.8 | CATTTTCAGAATATT |
|
Position: -145
Score: 4.6 Sequence: AATATTCTGACTTTT
Locus tag: Sca_0642
|
||||
| Sca_0642 | -145 | 4.6 | AATATTCTGACTTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: comK | ||||
| Ortholog function: competence transcription factor | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0882 | -147 | 4.9 | AATATTCTGACTATT |
| Staphylococcus capitis SK14 | STACA0001_0106 | -151 | 4.7 | AATATTCTGACATTT |
| Staphylococcus epidermidis ATCC 12228 | SE0731 | -147 | 4.7 | AATATTCTGACATTT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0642 | -145 | 4.6 | AATATTCTGACTTTT |
| -136 | 4.1 | ACTTTTTAAAAAATA | ||
| Staphylococcus haemolyticus JCSC1435 | SH1926 | -148 | 4.6 | AATATTCTGACTTTT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1755 | -186 | 4.6 | AATATTCAGACTTTT |
| -92 | 4.5 | AAATTTATAAAAATT | ||
| Macrococcus caseolyticus JCSC5402 | MCCL_1546 | -195 | 4.8 | ATAATTCTGAAAATT |
| -186 | 4.4 | AAAATTTAAATTATT | ||
| -86 | 4.7 | AAATTTCTTAAAATT | ||
|
Position: -82
Score: 4.6 Sequence: AAAAGTCAGAATATT
Locus tag: Sca_0643
|
||||
| Sca_0643 | -82 | 4.6 | AAAAGTCAGAATATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SA0883 | ||||
| Ortholog function: hypothetical protein | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0883 | -77 | 4.9 | AATAGTCAGAATATT |
| Staphylococcus capitis SK14 | STACA0001_0107 | -83 | 4.7 | AAATGTCAGAATATT |
| Staphylococcus epidermidis ATCC 12228 | SE0729 | -82 | 4.7 | AAATGTCAGAATATT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0643 | -178 | 4.2 | AATTATAAAAATAAT |
| -91 | 4.1 | TATTTTTTAAAAAGT | ||
| -82 | 4.6 | AAAAGTCAGAATATT | ||
| Staphylococcus haemolyticus JCSC1435 | SH1925 | -80 | 4.6 | AAAAGTCAGAATATT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1756 | -174 | 4.5 | AATTTTTATAAATTT |
| -80 | 4.6 | AAAAGTCTGAATATT | ||
|
Position: -108
Score: 4.2 Sequence: TTTATTCTAAAATTT
Locus tag: Sca_0656
|
||||
| Sca_0656 | -108 | 4.2 | TTTATTCTAAAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: patA | ||||
| Ortholog function: putative aminotransferase A | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0902 | -50 | 4.2 | TAATTTCTAAATTTT |
| -41 | 4.4 | AATTTTTAGACAATA | ||
| Staphylococcus capitis SK14 | STACA0001_2317 | -58 | 4.1 | ACTATTTTAACAATT |
| Staphylococcus epidermidis ATCC 12228 | SE0747 | -59 | 4.1 | ACTATTTAAACAATT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0656 | -108 | 4.2 | TTTATTCTAAAATTT |
| Staphylococcus haemolyticus JCSC1435 | SH1916 | -65 | 4.9 | ATTATTCTAAAAATT |
| Macrococcus caseolyticus JCSC5402 | MCCL_1585 | -86 | 4.3 | AATGTTCTAATAATT |
|
Position: -34
Score: 4.6 Sequence: AAAATTCAAATAATT
Locus tag: Sca_0740
|
||||
| Sca_0740 | -34 | 4.6 | AAAATTCAAATAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pycA | ||||
| Ortholog function: pyruvate carboxylase | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0963 | -41 | 4.6 | ATTAGTTAGAAAATT |
| Staphylococcus capitis SK14 | STACA0001_2249 | -42 | 4.6 | ATTAGTTAGAAAATT |
| -33 | 4.4 | AAAATTCAAAAAATA | ||
| Staphylococcus epidermidis ATCC 12228 | SE0813 | -40 | 4.1 | TATTATCTAATTATT |
| -31 | 4.9 | ATTATTTAGAAAATT | ||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0740 | -34 | 4.6 | AAAATTCAAATAATT |
| Staphylococcus haemolyticus JCSC1435 | SH1838 | -41 | 4.5 | ATTAGTTAGAATATT |
| -32 | 4 | AATATTCAAACTTTA | ||
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1675 | -38 | 4.7 | ACTTTTTAGAAAATT |
| -29 | 4.1 | AAAATTCAAAATTTA | ||
|
Position: -65
Score: 4.6 Sequence: AATAGTCAGACAATT
Locus tag: Sca_0936
|
||||
| Sca_0936 | -65 | 4.6 | AATAGTCAGACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: appA | ||||
| Ortholog function: oligopeptide transport system oligopeptide-binding protein AppA | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0850 | -93 | 4.1 | AAATAACTGAATATT |
| -84 | 4.7 | AATATTCTAAAAATA | ||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0936 | -65 | 4.6 | AATAGTCAGACAATT |
|
Position: -157
Score: 4.8 Sequence: AATTTACAGAAAATT
Locus tag: Sca_0958
|
||||
| Sca_0958 | -157 | 4.8 | AATTTACAGAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnR | ||||
| Ortholog function: HTH-type transcriptional regulator GlnR | ||||
| Staphylococcus aureus subsp. aureus N315 | SA1149 | -187 | 4.4 | ATTTATCAGATTATT |
| -178 | 4.2 | ATTATTTTTAAAAAT | ||
| Staphylococcus capitis SK14 | STACA0001_1553 | -202 | 4.3 | TTTTGTCAGAAAATT |
| -191 | 4.1 | AATTATAAAATTATT | ||
| -150 | 4.2 | ATTAATTAAAAATTT | ||
| Staphylococcus epidermidis ATCC 12228 | SE0986 | -194 | 4.8 | AAATGTCTGAAAATT |
| -185 | 4.7 | AAAATTTTAAAAATT | ||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0958 | -157 | 4.8 | AATTTACAGAAAATT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1452 | -179 | 4.2 | ATTTTTTTGAATAAA |
| -157 | 4.9 | AATTTTCTAATAATT | ||
| -56 | 4.4 | ATTAATCTGATTATT | ||
|
Position: -97
Score: 4.4 Sequence: AAAGTTCAAAAAATT
Locus tag: Sca_0969
|
||||
| Sca_0969 | -97 | 4.4 | AAAGTTCAAAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: thrA | ||||
| Ortholog function: aspartokinase III | ||||
| Staphylococcus aureus subsp. aureus N315 | SA1163 | -87 | 4.6 | AATATTCAAAATATA |
| -35 | 4.7 | AATTTTCTGATTTTT | ||
| Staphylococcus capitis SK14 | STACA0001_1570 | -33 | 4.7 | AATTTTCTGATTTTT |
| Staphylococcus epidermidis ATCC 12228 | SE1008 | -33 | 4.7 | AATTTTCTGATTTTT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0969 | -97 | 4.4 | AAAGTTCAAAAAATT |
| -79 | 4.2 | AATATGTTGAAATTT | ||
| Staphylococcus haemolyticus JCSC1435 | SH1580 | -35 | 4.7 | AATTTTCTGATTTTT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1439 | -35 | 4.7 | AATTTTCTGATTTTT |
|
Position: -109
Score: 4.4 Sequence: AATTTTTTGAACTTT
Locus tag: Sca_0970
|
||||
| Sca_0970 | -109 | 4.4 | AATTTTTTGAACTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hom | ||||
| Ortholog function: homoserine dehydrogenase | ||||
| Staphylococcus aureus subsp. aureus N315 | SA1164 | -170 | 4.7 | AAAAATCAGAAAATT |
| -118 | 4.6 | TATATTTTGAATATT | ||
| Staphylococcus capitis SK14 | STACA0001_1571 | -170 | 4.7 | AAAAATCAGAAAATT |
| -91 | 4.3 | AAAATTAAGAATAAT | ||
| Staphylococcus epidermidis ATCC 12228 | SE1009 | -170 | 4.7 | AAAAATCAGAAAATT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0970 | -127 | 4.2 | AAATTTCAACATATT |
| -109 | 4.4 | AATTTTTTGAACTTT | ||
| Staphylococcus haemolyticus JCSC1435 | SH1579 | -178 | 4.7 | AAAAATCAGAAAATT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1438 | -168 | 4.7 | AAAAATCAGAAAATT |
|
Position: -121
Score: 4.3 Sequence: TTTTTTCAGAATTTT
Position: -112
Score: 4.7 Sequence: AATTTTTTAAATTTT
Locus tag: Sca_0975
|
||||
| Sca_0975 | -121 | 4.3 | TTTTTTCAGAATTTT | |
| -112 | 4.7 | AATTTTTTAAATTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rocC | ||||
| Ortholog function: amino acid permease | ||||
| Staphylococcus aureus subsp. aureus N315 | SA1169 | -110 | 4.7 | AAAAATCAGAAAATT |
| -101 | 4.1 | AAAATTTTAATTTTT | ||
| Staphylococcus capitis SK14 | STACA0001_1576 | -112 | 5.1 | AAATTTCAGAAAATT |
| -102 | 4.7 | AAATTTTTAAATATT | ||
| Staphylococcus epidermidis ATCC 12228 | SE1015 | -112 | 4.6 | AAATATCAGAAAAAT |
| -103 | 4.1 | AAAAATTTAACAATT | ||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0975 | -121 | 4.3 | TTTTTTCAGAATTTT |
| -112 | 4.7 | AATTTTTTAAATTTT | ||
| Staphylococcus haemolyticus JCSC1435 | SH1574 | -114 | 5.1 | AAATTTCAGAAAATT |
| -105 | 4.4 | AAAATTTAAAATTTT | ||
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1433 | -111 | 4.4 | AATATTTAAACATTT |
| Macrococcus caseolyticus JCSC5402 | MCCL_0990 | -56 | 4.4 | AATTTTCTTAATTAT |
|
Position: -350
Score: 4.1 Sequence: TTTTTTCAGTAAATT
Position: -340
Score: 4.3 Sequence: AAATTTCTAAAAATC
Locus tag: Sca_1037
|
||||
| Sca_1037 | -350 | 4.1 | TTTTTTCAGTAAATT | |
| -340 | 4.3 | AAATTTCTAAAAATC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lysC | ||||
| Ortholog function: aspartokinase II | ||||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_1037 | -340 | 4.3 | AAATTTCTAAAAATC |
| Staphylococcus haemolyticus JCSC1435 | SH1518 | -344 | 4.1 | ATTTTTCAGTCTATT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1357 | -350 | 4.5 | ATTTTTCAGTAAATT |
| -341 | 4.3 | TAAATTTAAAAAATT | ||
|
Position: 27
Score: 4.2 Sequence: ATTATTCAATATATT
Locus tag: Sca_1041
|
||||
| Sca_1041 | 27 | 4.2 | ATTATTCAATATATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dapD | ||||
| Ortholog function: tetrahydrodipicolinate acetyltransferase | ||||
| Staphylococcus aureus subsp. aureus N315 | SA1229 | -45 | 5.2 | AATATTCTAAAAATT |
| Staphylococcus capitis SK14 | STACA0001_1643 | -44 | 5 | AATTTTCTTAAAATT |
| Staphylococcus epidermidis ATCC 12228 | SE1077 | -46 | 5.2 | AATTTTCTAAAAATT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_1041 | -340 | 4.3 | AAATTTCTAAAAATC |
| Staphylococcus haemolyticus JCSC1435 | SH1514 | -42 | 4.8 | AATTTTTTTAAAATT |
| -33 | 4.3 | AAAATTCAAACAAAT | ||
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1353 | -350 | 4.5 | ATTTTTCAGTAAATT |
| -341 | 4.3 | TAAATTTAAAAAATT | ||
|
Position: -96
Score: 4.7 Sequence: AATTTTCAGAAAGTT
Locus tag: Sca_1051
|
||||
| Sca_1051 | -96 | 4.7 | AATTTTCAGAAAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: braB | ||||
| Ortholog function: branched-chain amino acid transport system | ||||
| Staphylococcus capitis SK14 | STACA0001_1652 | -85 | 4.7 | AATTTTCTGAAATTA |
| Staphylococcus epidermidis ATCC 12228 | SE1090 | -87 | 5.1 | AATTTTCTGAAATTT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_1051 | -96 | 4.7 | AATTTTCAGAAAGTT |
| Staphylococcus haemolyticus JCSC1435 | SH1502 | -87 | 4.2 | AATTTTCTGAAATCA |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1343 | -95 | 4.5 | ATATTTTTAAATATT |
| -86 | 5 | AATATTCTGAAATTT | ||
| Macrococcus caseolyticus JCSC5402 | MCCL_1059 | -84 | 4.9 | AATATTCAGAAAATA |
|
Position: -55
Score: 4.9 Sequence: TATTTTCAGAATATT
Locus tag: Sca_1329
|
||||
| Sca_1329 | -55 | 4.9 | TATTTTCAGAATATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SA1544 | ||||
| Ortholog function: putative phosphoserine transaminase | ||||
| Staphylococcus aureus subsp. aureus N315 | SA1544 | -54 | 5.4 | AATTTTCAGAAAATT |
| Staphylococcus capitis SK14 | STACA0001_0615 | -53 | 5.2 | AATATTCAGAATATT |
| Staphylococcus epidermidis ATCC 12228 | SE1400 | -54 | 5 | AATATTCAGAATTTT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_1329 | -55 | 4.9 | TATTTTCAGAATATT |
| Staphylococcus haemolyticus JCSC1435 | SH1201 | -55 | 5 | AATTATCAGAATATT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1040 | -55 | 4.9 | TATTTTCTGAAAATT |
|
Position: -96
Score: 4.2 Sequence: AAAAATCAGAATTAT
Position: -87
Score: 4.1 Sequence: AATTATCATAATTAT
Locus tag: Sca_1338
|
||||
| Sca_1338 | -96 | 4.2 | AAAAATCAGAATTAT | |
| -87 | 4.1 | AATTATCATAATTAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acsA | ||||
| Ortholog function: acetyl-CoA synthetase | ||||
| Staphylococcus aureus subsp. aureus N315 | SA1554 | -78 | 4.6 | AAAATTTTGAATAAT |
| -69 | 4.1 | AATAATTAGAAATGT | ||
| Staphylococcus capitis SK14 | STACA0001_0626 | -78 | 4.3 | AGATTTTTGAAAAAT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_1338 | -96 | 4.2 | AAAAATCAGAATTAT |
| -87 | 4.1 | AATTATCATAATTAT | ||
| Staphylococcus haemolyticus JCSC1435 | SH1189 | -87 | 4.9 | AATTATCTAAAAATT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1030 | -75 | 4.9 | ATTATTTTGAAAATT |
| Macrococcus caseolyticus JCSC5402 | MCCL_1409 | -48 | 4.5 | TATATTTTGAAAAAT |
|
Position: -159
Score: 4.1 Sequence: ATAATTATGATAATT
Position: -150
Score: 4.2 Sequence: ATAATTCTGATTTTT
Locus tag: Sca_1339
|
||||
| Sca_1339 | -159 | 4.1 | ATAATTATGATAATT | |
| -150 | 4.2 | ATAATTCTGATTTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acuA | ||||
| Ortholog function: hypothetical protein | ||||
| Staphylococcus aureus subsp. aureus N315 | SA1555 | -114 | 4.1 | ACATTTCTAATTATT |
| -105 | 4.6 | ATTATTCAAAATTTT | ||
| -56 | 4.3 | AATTTTCTATATAAT | ||
| Staphylococcus capitis SK14 | STACA0001_0627 | -110 | 4.3 | ATTTTTCAAAAATCT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_1339 | -159 | 4.1 | ATAATTATGATAATT |
| -150 | 4.2 | ATAATTCTGATTTTT | ||
| Staphylococcus haemolyticus JCSC1435 | SH1188 | -92 | 4.9 | AATTTTTAGATAATT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1029 | -119 | 4.9 | AATTTTCAAAATAAT |
| Macrococcus caseolyticus JCSC5402 | MCCL_1410 | -39 | 4.5 | ATTTTTCAAAATATA |
|
Position: -139
Score: 5.2 Sequence: AATTTTCAAAATATT
Locus tag: Sca_1398
|
||||
| Sca_1398 | -139 | 5.2 | AATTTTCAAAATATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sca_1398 | ||||
| Ortholog function: hypothetical protein | ||||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_1398 | -139 | 5.2 | AATTTTCAAAATATT |
|
Position: -83
Score: 5.1 Sequence: AAATTTCAGAAAATT
Position: -74
Score: 4 Sequence: AAAATTTAAAAATTA
Position: -73
Score: 4 Sequence: AAATTTAAAAATTAT
Position: 14
Score: 4.1 Sequence: ATTATTTAAAACATT
Locus tag: Sca_1432
|
||||
| Sca_1432 | -83 | 5.1 | AAATTTCAGAAAATT | |
| -74 | 4 | AAAATTTAAAAATTA | ||
| -73 | 4 | AAATTTAAAAATTAT | ||
| 14 | 4.1 | ATTATTTAAAACATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: artQ | ||||
| Ortholog function: Arginine ABC transport system ArtQ | ||||
| Staphylococcus aureus subsp. aureus N315 | SA1675 | -167 | 4.3 | ATAATTATGAATATT |
| Staphylococcus capitis SK14 | STACA0001_0720 | 6 | 4.2 | AAAATTATTAAAATT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_1432 | -83 | 5.1 | AAATTTCAGAAAATT |
| -74 | 4 | AAAATTTAAAAATTA | ||
| Staphylococcus haemolyticus JCSC1435 | SH1104 | -72 | 4 | CTTTTTTAAAATTTT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP0937 | -63 | 4.2 | ATTATATTGAATATT |
| Macrococcus caseolyticus JCSC5402 | MCCL_1584 | -87 | 4.3 | AATTATTAGAACATT |
|
Position: -101
Score: 5.3 Sequence: AATTTTCTGAATATT
Locus tag: Sca_1514
|
||||
| Sca_1514 | -101 | 5.3 | AATTTTCTGAATATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ltaE | ||||
| Ortholog function: low specificity L-threonine aldolase | ||||
| Staphylococcus capitis SK14 | STACA0001_1558 | -154 | 4.7 | AATATTCAGAATTAT |
| Staphylococcus epidermidis ATCC 12228 | SE0995 | -149 | 5 | AATATTCAGAAATTT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_1514 | -101 | 5.3 | AATTTTCTGAATATT |
|
Position: -316
Score: 4.8 Sequence: AATTTTAAAAAAATT
Position: -307
Score: 4.3 Sequence: AAAATTCTAATAAAT
Position: -250
Score: 4.9 Sequence: AATTTTTAGACAATT
Locus tag: Sca_1559
|
||||
| Sca_1559 | -316 | 4.8 | AATTTTAAAAAAATT | |
| -307 | 4.3 | AAAATTCTAATAAAT | ||
| -250 | 4.9 | AATTTTTAGACAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ilvD | ||||
| Ortholog function: dihydroxy-acid dehydratase | ||||
| Staphylococcus aureus subsp. aureus N315 | SA1858 | -301 | 4.9 | AATTTTTAGACAATT |
| -53 | 4.5 | ATATTTCAGAATTTT | ||
| Staphylococcus capitis SK14 | STACA0001_0526 | -327 | 4.9 | AATTGTTAGAAAATT |
| Staphylococcus epidermidis ATCC 12228 | SE1654 | -330 | 5.2 | AATTTTTAGAAAATT |
| -321 | 4.1 | AAAATTCTAAATTTA | ||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_1559 | -316 | 4.8 | AATTTTAAAAAAATT |
| -307 | 4.3 | AAAATTCTAATAAAT | ||
| Staphylococcus haemolyticus JCSC1435 | SH0980 | -321 | 4.4 | AGTTGTTAGAAAATT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP0825 | -323 | 4.2 | AATTGACAGAAAAAT |
| -266 | 4 | ATTTATCAAATTTTT | ||
| -258 | 4.7 | AATTTTTAGATATTT | ||
| -249 | 4.1 | ATATTTCAAACAAAT | ||
| Macrococcus caseolyticus JCSC5402 | MCCL_0860 | -266 | 5.2 | AATTTTTAGAAAATT |
| -257 | 4.7 | AAAATTTTAAATATT | ||
|
Position: -52
Score: 4.8 Sequence: AAAATTCTAAATATT
Locus tag: Sca_1562
|
||||
| Sca_1562 | -52 | 4.8 | AAAATTCTAAATATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ilvC | ||||
| Ortholog function: alpha-keto-beta-hydroxylacil reductoisomerase | ||||
| Staphylococcus aureus subsp. aureus N315 | SA1861 | -301 | 4.9 | AATTTTTAGACAATT |
| -53 | 4.5 | ATATTTCAGAATTTT | ||
| Staphylococcus capitis SK14 | STACA0001_0523 | -49 | 5.2 | AATATTTTGAAAATT |
| -40 | 4.3 | AAAATTAAGAATTTT | ||
| Staphylococcus epidermidis ATCC 12228 | SE1657 | -50 | 4.9 | ATTATTTTGAAAATT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_1562 | -52 | 4.8 | AAAATTCTAAATATT |
| Staphylococcus haemolyticus JCSC1435 | SH0977 | -54 | 4.9 | AATTTTAAGAATATT |
| -45 | 5.1 | AATATTCTAAATATT | ||
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP0822 | -323 | 4.2 | AATTGACAGAAAAAT |
| -266 | 4 | ATTTATCAAATTTTT | ||
| -258 | 4.7 | AATTTTTAGATATTT | ||
| -249 | 4.1 | ATATTTCAAACAAAT | ||
| Macrococcus caseolyticus JCSC5402 | MCCL_0858 | -266 | 5.2 | AATTTTTAGAAAATT |
| -257 | 4.7 | AAAATTTTAAATATT | ||
|
Position: -176
Score: 4.1 Sequence: AATTTATTAAATTTT
Position: -167
Score: 4.1 Sequence: AATTTTCGAAAAAGT
Locus tag: Sca_1636
|
||||
| Sca_1636 | -176 | 4.1 | AATTTATTAAATTTT | |
| -167 | 4.1 | AATTTTCGAAAAAGT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hmrA | ||||
| Ortholog function: N-acyl-L-amino acid amidohydrolase | ||||
| Staphylococcus aureus subsp. aureus N315 | SA1935 | -143 | 4.5 | AGTTATTAGAAAATT |
| Staphylococcus capitis SK14 | STACA0001_0837 | -235 | 4.6 | AATTGTAAGAAAATT |
| Staphylococcus epidermidis ATCC 12228 | SE1731 | -113 | 4.6 | AATTGTAAGAAAATT |
| -102 | 4.2 | AATTGTGTAAAAATT | ||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_1636 | -176 | 4.1 | AATTTATTAAATTTT |
| Staphylococcus haemolyticus JCSC1435 | SH0902 | -179 | 4.7 | AATTTTCAAAATTAT |
| -52 | 4.5 | AATATCCAAAATATT | ||
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP0752 | -190 | 4.1 | TATTTTTATAAATTT |
| -181 | 4.6 | AAATTTCAGAAAATG | ||
|
Position: -90
Score: 5.2 Sequence: AATATTTAGAAAATT
Locus tag: Sca_1748
|
||||
| Sca_1748 | -90 | 5.2 | AATATTTAGAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sca_1748 | ||||
| Ortholog function: hypothetical protein | ||||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_1748 | -90 | 5.2 | AATATTTAGAAAATT |
| -81 | 4.2 | AAAATTATAAAAAAT | ||
|
Position: -126
Score: 4.6 Sequence: AATTTTCTTATAATT
Locus tag: Sca_1918
|
||||
| Sca_1918 | -126 | 4.6 | AATTTTCTTATAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aapA | ||||
| Ortholog function: D-serine/D-alanine/glycine transporter | ||||
| Staphylococcus aureus subsp. aureus N315 | SA2226 | -108 | 4.3 | TATATTTAAAAAAAT |
| Staphylococcus aureus subsp. aureus N315 | SA2227 | -108 | 4.3 | TATATTTAAAAAAAT |
| Staphylococcus capitis SK14 | STACA0001_1050 | -166 | 4.8 | AATTTTTTGATTATT |
| -157 | 4.7 | ATTATTCTAAAAAAT | ||
| Staphylococcus epidermidis ATCC 12228 | SE2004 | -93 | 4.9 | ATATTTCTGAAAATT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_1918 | -126 | 4.6 | AATTTTCTTATAATT |
| Staphylococcus haemolyticus JCSC1435 | SH0623 | -231 | 5.1 | AATTTTCAGAAATTT |
|
Position: -116
Score: 4.7 Sequence: AATTATCTGAATTTT
Position: -57
Score: 4.2 Sequence: TTTATTCAAAAAAAT
Locus tag: Sca_1975
|
||||
| Sca_1975 | -116 | 4.7 | AATTATCTGAATTTT | |
| -57 | 4.2 | TTTATTCAAAAAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ddh2 | ||||
| Ortholog function: D-lactate dehydrogenase | ||||
| Staphylococcus aureus subsp. aureus N315 | SA2346 | -205 | 4.8 | ATTAATCTGAAAATT |
| Staphylococcus capitis SK14 | STACA0001_0935 | -212 | 4.2 | AAATGTTTGAAAATA |
| -93 | 4.6 | ACTTATCTGAAAATT | ||
| Staphylococcus epidermidis ATCC 12228 | SE2121 | -61 | 4.4 | TTATTTCAGAAAATT |
| -52 | 4.5 | AAAATTCTAACTATT | ||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_1975 | -116 | 4.7 | AATTATCTGAATTTT |
| -57 | 4.2 | TTTATTCAAAAAAAT | ||
| Staphylococcus haemolyticus JCSC1435 | SH0493 | -253 | 4.5 | ATAAATCTGAAAATT |
| -244 | 4.4 | AAAATTATAAATATT | ||
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP0295 | -203 | 4.3 | AATATTCTGATAAAA |
|
Position: -282
Score: 4.7 Sequence: CATATTTTGAAAATT
Position: -69
Score: 4.5 Sequence: TATTATCAGAATATT
Locus tag: Sca_2043
|
||||
| Sca_2043 | -282 | 4.7 | CATATTTTGAAAATT | |
| -69 | 4.5 | TATTATCAGAATATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SA2357 | ||||
| Ortholog function: putative regulatory protein | ||||
| Staphylococcus aureus subsp. aureus N315 | SA2357 | -188 | 4.2 | CTTTATCTAAAAATT |
| -179 | 4.7 | AAAATTCAGAATTTT | ||
| Staphylococcus capitis SK14 | STACA0001_0926 | -184 | 4.6 | AATTATCTAAATTTT |
| -175 | 4.4 | AATTTTCTGAAAACG | ||
| Staphylococcus epidermidis ATCC 12228 | SE2129 | -172 | 5.1 | AATTTTCAGAAAAAT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_2043 | -282 | 4.7 | CATATTTTGAAAATT |
| -69 | 4.5 | TATTATCAGAATATT | ||
| Staphylococcus haemolyticus JCSC1435 | SH0484 | -156 | 5.3 | AATATTCTGAAAATT |
| -147 | 4.1 | AAAATTTAGAATTTG | ||
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP0292 | -65 | 5.3 | AATATTCTGAAAATT |
| -56 | 4.2 | AAAATTAAGAAAATA | ||
|
Position: -112
Score: 4.5 Sequence: ATAATTCAGAATAAT
Locus tag: Sca_2121
|
||||
| Sca_2121 | -112 | 4.5 | ATAATTCAGAATAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ddh2 | ||||
| Ortholog function: D-lactate dehydrogenase | ||||
| Macrococcus caseolyticus JCSC5402 | MCCL_0071 | -120 | 4.1 | ATTAATTTAAATAAT |
| -111 | 4.5 | AATAATCAAACAATT | ||
|
Position: -105
Score: 5 Sequence: AAATTTCTGAATATT
Locus tag: Sca_2142
|
||||
| Sca_2142 | -105 | 5 | AAATTTCTGAATATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fmdA | ||||
| Ortholog function: putative formamidase | ||||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_2142 | -105 | 5 | AAATTTCTGAATATT |
| Macrococcus caseolyticus JCSC5402 | MCCL_1483 | -61 | 4.9 | AATATTCTGAAAACT |
| -29 | 4.1 | TAATTTTAAAAATTT | ||
|
Position: -34
Score: 4.1 Sequence: ATTTTTTAAAATAAA
Locus tag: Sca_2238
|
||||
| Sca_2238 | -34 | 4.1 | ATTTTTTAAAATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: opuCC | ||||
| Ortholog function: glycine betaine/carnitine/choline ABC transporter opuCC | ||||
| Staphylococcus capitis SK14 | STACA0001_1038 | -145 | 4.3 | CATATTCAAAATTTT |
| Staphylococcus epidermidis ATCC 12228 | SE2016 | -80 | 4.1 | ATTTGTTTAACAATT |
| Staphylococcus haemolyticus JCSC1435 | SH0608 | -134 | 4.1 | ATTAATTAAAATTTT |
|
Position: -83
Score: 4.8 Sequence: AATTTTCAGAATTAT
Locus tag: Sca_2265
|
||||
| Sca_2265 | -83 | 4.8 | AATTTTCAGAATTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SA2261 | ||||
| Ortholog function: putative p-aminobenzoyl-glutamate transporter | ||||
| Staphylococcus aureus subsp. aureus N315 | SA2261 | -75 | 4.9 | CATTTTCTGAAAATT |
| Staphylococcus capitis SK14 | STACA0001_1021 | -78 | 5.1 | AAATTTCAGAAAATT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_2265 | -83 | 4.8 | AATTTTCAGAATTAT |
| Staphylococcus haemolyticus JCSC1435 | SH0589 | -75 | 5.1 | AAATTTCTGAAAATT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP0435 | -75 | 4.9 | TATTTTCAGAATATT |
|
Position: -151
Score: 4 Sequence: ATTTTTGAAATAATT
Position: -28
Score: 4.1 Sequence: ATTATTCTAAATAAG
Locus tag: Sca_2336
|
||||
| Sca_2336 | -151 | 4 | ATTTTTGAAATAATT | |
| -28 | 4.1 | ATTATTCTAAATAAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: katA | ||||
| Ortholog function: catalase | ||||
| Staphylococcus aureus subsp. aureus N315 | SA1170 | -111 | 4.1 | AAAAATTAAAATTTT |
| -102 | 4.7 | AATTTTCTGATTTTT | ||
| Staphylococcus capitis SK14 | STACA0001_1577 | -131 | 4.7 | AATATTTAAAAATTT |
| -121 | 5.1 | AATTTTCTGAAATTT | ||
| Staphylococcus epidermidis ATCC 12228 | SE1016 | -142 | 4.1 | AATTGTTAAATTTTT |
| -133 | 4.6 | ATTTTTCTGATATTT | ||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_2336 | -28 | 4.1 | ATTATTCTAAATAAG |
| Staphylococcus haemolyticus JCSC1435 | SH1573 | -123 | 4.4 | AAAATTTTAAATTTT |
| -114 | 5.1 | AATTTTCTGAAATTT | ||
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1432 | -129 | 4.4 | AAATGTTTAAATATT |
|
Position: -49
Score: 4.3 Sequence: AATATTTAGAAAACA
Locus tag: Sca_2353
|
||||
| Sca_2353 | -49 | 4.3 | AATATTTAGAAAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: capD | ||||
| Ortholog function: capsular polysaccharide synthesis enzyme Cap5D | ||||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_2353 | -118 | 4.1 | AATAATTAGAAATTG |
| -81 | 4.3 | AAAAATTTGAAATTT | ||
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP0063 | -125 | 4.5 | CATATTTAAAAAATT |
|
Position: -81
Score: 4.3 Sequence: AAAAATTTGAAATTT
Locus tag: Sca_2357
|
||||
| Sca_2357 | -81 | 4.3 | AAAAATTTGAAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: capA | ||||
| Ortholog function: capsular polysaccharide synthesis enzyme Cap5A | ||||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_2357 | -118 | 4.1 | AATAATTAGAAATTG |
| -81 | 4.3 | AAAAATTTGAAATTT | ||
| Staphylococcus haemolyticus JCSC1435 | SH0388 | -367 | 4.6 | TATATTTAAAAAATT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP0060 | -125 | 4.5 | CATATTTAAAAAATT |
| Macrococcus caseolyticus JCSC5402 | MCCL_0668 | -103 | 4.2 | AATTGTATAAAAAAT |
| -63 | 4.3 | AAATTATTGAATATT | ||