Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Staphylococcus carnosus subsp. carnosus TM300

Reference regulog properties
Source regulog: CcpA - Staphylococcaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein; Fructose-1,6-diphosphate
Phylum: Firmicutes
Propagated regulon:
Target genome Staphylococcus carnosus subsp. carnosus TM300
Orthologous TF(s) Sca_1342
Regulated genes 58
Built upon 391 sites [see more]
Predicted regulatory interactions in Staphylococcus carnosus subsp. carnosus TM300
Locus tag Position Score Sequence
Position: -55
Score: 4.6
Sequence: TTGTAAGCGCTTATAA
Locus tag: Sca_0022
Sca_0022 -55 4.6 TTGTAAGCGCTTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcB
Ortholog function: ornithine carbamoyltransferase
Staphylococcus epidermidis ATCC 12228 SE0103 -50 4.6 TTGAAAGCGTTTTATA
Staphylococcus carnosus subsp. carnosus TM300 Sca_2257 -49 4.5 AAGGAAGCGCTTACAC
Position: -71
Score: 4.9
Sequence: TTGAAAGCCTTTACAT
Locus tag: Sca_0108
Sca_0108 -71 4.9 TTGAAAGCCTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: treP
Ortholog function: phosphotransferase system trehalose-specific enzyme IIBC component homolog
Staphylococcus aureus subsp. aureus N315 SA0432 -68 4.9 TTGAAAGCCTTTACAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0108 -71 4.9 TTGAAAGCCTTTACAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0109 -71 4.9 TTGAAAGCCTTTACAT
Staphylococcus haemolyticus JCSC1435 SH2538 -69 4.9 ATGAAAGCCTTTACAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2282 -81 4.9 ATGAAAACCTTTACAA
Macrococcus caseolyticus JCSC5402 MCCL_1938 -49 4.4 TTGAAAACCCTTTCAG
Position: -144
Score: 4.4
Sequence: ATGTAAGCGCTTTACT
Locus tag: Sca_0213
Sca_0213 -144 4.4 ATGTAAGCGCTTTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA0511
Ortholog function: uncharacterized epimerase/dehydratase
Staphylococcus aureus subsp. aureus N315 SA0511 -97 4.4 AAGAAAGCGCTTTTAT
Staphylococcus capitis SK14 STACA0001_0477 -98 4.4 AAGAAAGCGCTTTTAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0213 -144 4.4 ATGTAAGCGCTTTACT
Staphylococcus haemolyticus JCSC1435 SH2450 -101 4.4 AAGAAAGCGCTTTTAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2164 -164 4.3 TTGAAATCGCAATCAA
-98 3.9 AATAAAGCGTTTTTAT
Macrococcus caseolyticus JCSC5402 MCCL_1856 -94 4.3 ATGTAAGCGTTTCTAA
Position: -44
Score: 4.3
Sequence: ATGTAAGCGGAAACAT
Locus tag: Sca_0346
Sca_0346 -44 4.3 ATGTAAGCGGAAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruR
Ortholog function: transcription repressor of fructose operon, DeoR family
Staphylococcus aureus subsp. aureus N315 SA0653 -43 4 GTGAAAGCGTACTCAT
Staphylococcus capitis SK14 STACA0001_0331 -46 4.3 ATGTAAGCGCACTCAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0346 -44 4.3 ATGTAAGCGGAAACAT
Staphylococcus haemolyticus JCSC1435 SH2196 -45 4.3 ATGTAAGCGTACACAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2019 -44 4.3 AAGAAAGCGTAAACAT
Macrococcus caseolyticus JCSC5402 MCCL_0452 -28 3.9 ATGAAAGTGTTCACAA
Position: -62
Score: 4
Sequence: ATGAAAAGGCTTCATA
Locus tag: Sca_0452
Sca_0452 -62 4 ATGAAAAGGCTTCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yusH
Ortholog function: hypothetical protein
Staphylococcus aureus subsp. aureus N315 SA0760 -152 5 ATGTAAACGTTTACTA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1869 -124 4 ATGAAAACGCTTTACC
Position: -49
Score: 4.8
Sequence: ATGTAAGGGCTTTCTT
Locus tag: Sca_0564
Sca_0564 -49 4.8 ATGTAAGGGCTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rocA
Ortholog function: 1-pyrroline-5-carboxylate dehydrogenase
Staphylococcus aureus subsp. aureus N315 SA2341 -112 4.7 ATGAAAGCGATTGCAA
Staphylococcus capitis SK14 STACA0001_0943 -128 4.7 ATGTAAGCGATTGCAA
Staphylococcus epidermidis ATCC 12228 SE2116 -149 4.9 ATGTAAGCGTTTGCAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0564 -49 4.8 ATGTAAGGGCTTTCTT
Staphylococcus haemolyticus JCSC1435 SH0500 -128 4.7 ATGTAAGCGATTGCAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0311 -101 4.7 ATGTAAGCGATTGCAT
Macrococcus caseolyticus JCSC5402 MCCL_0582 -44 4.7 ATGTAAGGGTTTTCTA
Position: -64
Score: 4.4
Sequence: TTGGTAACGATTTCAT
Locus tag: Sca_0617
Sca_0617 -64 4.4 TTGGTAACGATTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA0873
Ortholog function: DJ-1/PfpI family protein
Staphylococcus aureus subsp. aureus N315 SA0873 -62 4.6 ATGTAACGGTTTTCAA
Staphylococcus capitis SK14 STACA0001_0121 -62 4.4 AAGTAACGGTTTTCAA
Staphylococcus epidermidis ATCC 12228 SE0715 -62 4.4 AAGTAACGGTTTTCAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0617 -64 4.4 TTGGTAACGATTTCAT
Staphylococcus haemolyticus JCSC1435 SH1944 -93 4.9 TTGTAAACCTTTTCAA
Position: -291
Score: 5
Sequence: TTGTAAACGCTTTCTA
Locus tag: Sca_0765
Sca_0765 -291 5 TTGTAAACGCTTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: succinate dehydrogenase cytochrome b subunit
Staphylococcus aureus subsp. aureus N315 SA0994 -235 4.4 GTGGAAGCGTTTTCTA
Staphylococcus capitis SK14 STACA0001_2159 -286 4.4 GTGGAAGCGTTTTCTA
Staphylococcus epidermidis ATCC 12228 SE0840 -270 4.7 ATGGAAGCGTTTTCTA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0765 -291 5 TTGTAAACGCTTTCTA
Staphylococcus haemolyticus JCSC1435 SH1814 -285 4.7 ATGGAAGCGTTTTCTA
-61 4 TTGAAAAGACTTTCTT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1648 -232 4.7 ATGGAAGCGTTTTCTA
Macrococcus caseolyticus JCSC5402 MCCL_1319 -85 4.5 ATGTAATCGGTTTCTT
Position: -163
Score: 4.3
Sequence: ATGAAAACTGTTTCAA
Locus tag: Sca_0882
Sca_0882 -163 4.3 ATGAAAACTGTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sucC
Ortholog function: succinyl-CoA synthetase beta subunit
Staphylococcus carnosus subsp. carnosus TM300 Sca_0882 -163 4.3 ATGAAAACTGTTTCAA
Position: -126
Score: 4.8
Sequence: TTGACAACGCTTTCAT
Locus tag: Sca_0948
Sca_0948 -126 4.8 TTGACAACGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF
Ortholog function: glycerol uptake facilitator
Staphylococcus aureus subsp. aureus N315 SA1140 -133 4.8 TTGACAACGCTTTCAT
Staphylococcus capitis SK14 STACA0001_1544 -132 4.7 TTGACAACGCTTACAA
Staphylococcus epidermidis ATCC 12228 SE0977 -130 4.7 TTGACAACGCTTACAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0948 -126 4.8 TTGACAACGCTTTCAT
Staphylococcus haemolyticus JCSC1435 SH1614 -128 4.7 TTGACAACGCTTACAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1461 -145 4.7 TTGACAACGCTTACAA
Macrococcus caseolyticus JCSC5402 MCCL_0891 -133 4.7 TTGACAACGTTTACAT
Position: -30
Score: 4.7
Sequence: TTGTAAGCGCTTACTC
Locus tag: Sca_0968
Sca_0968 -30 4.7 TTGTAAGCGCTTACTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA1162
Ortholog function: hypothetical protein
Staphylococcus aureus subsp. aureus N315 SA1162 -27 4.4 GTGAAAGCGCTTGCTT
Staphylococcus capitis SK14 STACA0001_1569 -30 4.8 ATGAAAGCGCTTGCTT
Staphylococcus epidermidis ATCC 12228 SE1007 -29 4.4 GTGAAAGCGCTTGCTA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0968 -30 4.7 TTGTAAGCGCTTACTC
Staphylococcus haemolyticus JCSC1435 SH1581 -29 4.8 ATGAAAGCGTTTCCTT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1440 -33 4.7 TTGGAAACGCTTACTT
Position: -68
Score: 4.5
Sequence: TTGTAATCCCTTACTT
Position: 27
Score: 4.5
Sequence: AAGAAAACGTTTTCTC
Locus tag: Sca_0991
Sca_0991 -68 4.5 TTGTAATCCCTTACTT
27 4.5 AAGAAAACGTTTTCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: citB
Ortholog function: aconitate hydratase
Staphylococcus aureus subsp. aureus N315 SA1184 -103 4.4 AATTAAGCGTTTTCTA
Staphylococcus capitis SK14 STACA0001_1597 -103 4.4 AATAAAGCGTTTTCTA
Staphylococcus epidermidis ATCC 12228 SE1032 -103 4.4 AATAAAGCGTTTTCTA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0991 -68 4.5 TTGTAATCCCTTACTT
Macrococcus caseolyticus JCSC5402 MCCL_1008 -36 4 ATGTAAAGGCTTTATC
Position: -42
Score: 4.7
Sequence: ATGAAAGCCATTTCAA
Locus tag: Sca_1301
Sca_1301 -42 4.7 ATGAAAGCCATTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: citZ
Ortholog function: citrate synthase
Staphylococcus aureus subsp. aureus N315 SA1518 -43 4.7 TTGAAAGCCATTTCAT
Staphylococcus capitis SK14 STACA0001_0589 -43 4.4 GTGAAAGCCATTTCAT
Staphylococcus epidermidis ATCC 12228 SE1371 -43 4.7 TTGAAAGCCATTTCAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1301 -42 4.7 ATGAAAGCCATTTCAA
Staphylococcus haemolyticus JCSC1435 SH1230 -42 4.4 TTGGAAGCCATTACAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1071 -42 4.8 ATGAAAGCCATTTCAT
Macrococcus caseolyticus JCSC5402 MCCL_1362 0 4.4 GTGAAAGCCATTACAT
Position: -103
Score: 4.6
Sequence: TATAAAACGTTTACAT
Locus tag: Sca_1304
Sca_1304 -103 4.6 TATAAAACGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pfkA
Ortholog function: 6-phosphofructokinase
Staphylococcus aureus subsp. aureus N315 SA1521 -151 4.8 TTTAAAACGTTTACAT
Staphylococcus capitis SK14 STACA0001_0592 -107 4.8 TTTAAAACGTTTACAT
Staphylococcus epidermidis ATCC 12228 SE1374 -152 4.8 TTTAAAACGTTTACAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1304 -103 4.6 TATAAAACGTTTACAT
Staphylococcus haemolyticus JCSC1435 SH1226 -152 4.6 TATAAAACGTTTACAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1068 -148 4.8 TTTAAAACGTTTACAT
Macrococcus caseolyticus JCSC5402 MCCL_1365 -100 4.8 TTTAAAACGTTTTCAT
Position: -54
Score: 4.6
Sequence: ATGATTGCGCTTTCAT
Locus tag: Sca_1314
Sca_1314 -54 4.6 ATGATTGCGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ald
Ortholog function: alanine dehydrogenase
Staphylococcus aureus subsp. aureus N315 SA1531 -52 4.5 TTGATTGCGCTTTCAA
Staphylococcus capitis SK14 STACA0001_0602 -52 4.6 ATGATTGCGCTTTCAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1314 -54 4.6 ATGATTGCGCTTTCAT
Staphylococcus haemolyticus JCSC1435 SH1216 -52 4.1 CTGATTGCGCTTTCAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1057 -52 4.6 TTGATTGCGCTTTCAT
Position: -44
Score: 4.6
Sequence: AATAAAACGTTTTCAT
Locus tag: Sca_1332
Sca_1332 -44 4.6 AATAAAACGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptaA
Ortholog function: PTS system N-acetylglucosamine-specific IIBC component
Staphylococcus capitis SK14 STACA0001_0618 -168 4.6 AATAAAACGTTTACAT
-48 4.3 ATGAAAAGCATTTCAA
Staphylococcus epidermidis ATCC 12228 SE1403 -131 4.6 AATTAAGCGTTTACAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1332 -44 4.6 AATAAAACGTTTTCAT
Staphylococcus haemolyticus JCSC1435 SH1198 -101 3.9 TCAAAAGCGCTTACAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1037 -86 4.1 AGTAAATCGTTTACAT
Position: -328
Score: 4.8
Sequence: AAGAAAGCGCTTGCAT
Locus tag: Sca_1337
Sca_1337 -328 4.8 AAGAAAGCGCTTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhs
Ortholog function: formyltetrahydrofolate synthetase
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1031 -147 4.4 TTGAAAGCGCTATCTC
Macrococcus caseolyticus JCSC5402 MCCL_1408 -62 4.7 ATGAAAGCGTTATCTT
Position: -34
Score: 5
Sequence: ATGAAAACGATTTCAA
Locus tag: Sca_1338
Sca_1338 -34 5 ATGAAAACGATTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acsA
Ortholog function: acetyl-CoA synthetase
Staphylococcus aureus subsp. aureus N315 SA1554 -37 4.7 AAGAAAGCGTTTTCAC
Staphylococcus capitis SK14 STACA0001_0626 -35 4.9 AAGAAAGCGATTTCAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1338 -34 5 ATGAAAACGATTTCAA
Staphylococcus haemolyticus JCSC1435 SH1189 -36 4.9 AAGAAAGCGATTTCAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1030 -33 4.5 AAGCAAGCGATTTCAT
Macrococcus caseolyticus JCSC5402 MCCL_1409 0 4.7 ATGAAAACGATTACAC
Position: -213
Score: 5
Sequence: TTGAAATCGTTTTCAT
Locus tag: Sca_1339
Sca_1339 -213 5 TTGAAATCGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acuA
Ortholog function: acetoin utilization protein AcuA
Staphylococcus aureus subsp. aureus N315 SA1555 -147 4.7 GTGAAAACGCTTTCTT
Staphylococcus capitis SK14 STACA0001_0627 -154 4.9 ATGAAATCGCTTTCTT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1339 -213 5 TTGAAATCGTTTTCAT
Staphylococcus haemolyticus JCSC1435 SH1188 -144 4.9 ATGAAATCGCTTTCTT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1029 -162 4.5 ATGAAATCGCTTGCTT
Position: -71
Score: 4.9
Sequence: TTGTTAACGTTTTCAT
Locus tag: Sca_1371
Sca_1371 -71 4.9 TTGTTAACGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putA
Ortholog function: proline dehydrogenase
Staphylococcus aureus subsp. aureus N315 SA1585 -71 4.7 ATGAAAACGCTTTCTC
Staphylococcus capitis SK14 STACA0001_0658 -81 4.7 ATGTAAACGCTTTCTC
Staphylococcus epidermidis ATCC 12228 SE1437 -80 5.1 ATGTAAACGCTTTCTT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1371 -71 4.9 TTGTTAACGTTTTCAT
Staphylococcus haemolyticus JCSC1435 SH1157 -81 5 TTGAAAACGCTTTCTA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0999 -80 5 TTGTAAACGATTTCAT
Macrococcus caseolyticus JCSC5402 MCCL_1451 -52 4.9 TTTAAAGCGTTTTCAT
Position: -54
Score: 4.9
Sequence: ATGTAAAGGCTTACAA
Locus tag: Sca_1390
Sca_1390 -54 4.9 ATGTAAAGGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pckA
Ortholog function: phosphoenolpyruvate carboxykinase
Staphylococcus carnosus subsp. carnosus TM300 Sca_1390 -54 4.9 ATGTAAAGGCTTACAA
Position: -137
Score: 4.3
Sequence: ATGTAAACGCTTTACT
Locus tag: Sca_1474
Sca_1474 -137 4.3 ATGTAAACGCTTTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putP
Ortholog function: high affinity proline permease
Staphylococcus aureus subsp. aureus N315 SA1718 -137 4.1 ACGAAAGCGCTTCCTA
Staphylococcus capitis SK14 STACA0001_1955 -134 4.5 GAGTAAGCGCTTTCTA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1474 -137 4.3 ATGTAAACGCTTTACT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0889 -137 4.1 ATGGAAGCGCTTAACA
Position: -138
Score: 4.9
Sequence: ATGTATACGTTTACAT
Locus tag: Sca_1495
Sca_1495 -138 4.9 ATGTATACGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdcS
Ortholog function: sodium-dependent dicarboxylate transporter
Staphylococcus aureus subsp. aureus N315 SA1732 -162 4.9 TTGAAAGCGCATTCAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1495 -138 4.9 ATGTATACGTTTACAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0875 -100 4.6 ATGTAAACGATTTAAA
Position: -143
Score: 4.8
Sequence: TTGAATACGTTTTCAT
Position: -102
Score: 4.3
Sequence: TTAAAACCGCTTACAT
Locus tag: Sca_1628
Sca_1628 -143 4.8 TTGAATACGTTTTCAT
-102 4.3 TTAAAACCGCTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fbaA
Ortholog function: fructose-bisphosphate aldolase
Staphylococcus aureus subsp. aureus N315 SA1927 -142 4.5 ATGTATACGTTTGCAT
Staphylococcus capitis SK14 STACA0001_0829 -144 4.3 ATGAATGCGGTTGCAA
Staphylococcus epidermidis ATCC 12228 SE1723 -143 4.4 ATGTATTCGCTTCCAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1628 -143 4.8 TTGAATACGTTTTCAT
-102 4.3 TTAAAACCGCTTACAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0759 -101 4.6 ATAAAAACGCTTACAA
Position: -141
Score: 5
Sequence: TAGAAAACGTTTTCAA
Locus tag: Sca_1672
Sca_1672 -141 5 TAGAAAACGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA1975
Ortholog function: predicted membrane-bound hydrolase
Staphylococcus aureus subsp. aureus N315 SA1975 -128 5 TTGTAATCGTTTTCAA
Staphylococcus capitis SK14 STACA0001_1306 -131 5 TTGAAATCGTTTTCAA
Staphylococcus epidermidis ATCC 12228 SE1762 -130 4.7 GTGTAATCGTTTTCAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1672 -141 5 TAGAAAACGTTTTCAA
Staphylococcus haemolyticus JCSC1435 SH0869 -129 4.7 GTGTAATCGTTTTCAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0715 -128 4.6 TTGCAATCGTTTTCAA
Position: -64
Score: 5
Sequence: TTGAAAACGTTTTCTA
Locus tag: Sca_1673
Sca_1673 -64 5 TTGAAAACGTTTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SAS074
Ortholog function: hypothetical protein
Staphylococcus aureus subsp. aureus N315 SAS074 -64 5 TTGAAAACGATTACAA
Staphylococcus capitis SK14 STACA0001_1305 -62 5 TTGAAAACGATTTCAA
Staphylococcus epidermidis ATCC 12228 SE1763 -62 4.7 TTGAAAACGATTACAC
-15 4 AAGGAAGTGTTTTCAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1673 -64 5 TTGAAAACGTTTTCTA
Staphylococcus haemolyticus JCSC1435 SH0868 -63 4.7 TTGAAAACGATTACAC
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0714 -64 4.6 TTGAAAACGATTGCAA
Position: -119
Score: 5.1
Sequence: ATGTAAGCGTTTACTT
Locus tag: Sca_1807
Sca_1807 -119 5.1 ATGTAAGCGTTTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA2105
Ortholog function: hypothetical protein
Staphylococcus aureus subsp. aureus N315 SA2105 -117 4.7 ATGTAAGCGTTTTCCA
Staphylococcus capitis SK14 STACA0001_1178 -131 5 TTGTAAGCGTTTTCTA
Staphylococcus epidermidis ATCC 12228 SE1885 -130 5 TTGTAAGCGTTTTCTA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1807 -119 5.1 ATGTAAGCGTTTACTT
Staphylococcus haemolyticus JCSC1435 SH0745 -127 4.7 TTGTAAGCGTTTTCCT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0598 -109 5.1 ATGTAAGCGTTTTCTT
Position: -70
Score: 4.3
Sequence: ATGGAAGCGTTGTCTT
Locus tag: Sca_1820
Sca_1820 -70 4.3 ATGGAAGCGTTGTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpT
Ortholog function: glycerol-3-phosphate transporter
Staphylococcus aureus subsp. aureus N315 SA0325 -76 4.8 TTGACAACGCTTTCAT
Staphylococcus epidermidis ATCC 12228 SE2047 -85 4.5 TTGACAACGCTTACTT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1820 -70 4.3 ATGGAAGCGTTGTCTT
Macrococcus caseolyticus JCSC5402 MCCL_0370 -82 4.7 TTGTAAAGGCTTTCTT
Position: -85
Score: 4.5
Sequence: TAGAAAGCGCTTTCTC
Locus tag: Sca_1865
Sca_1865 -85 4.5 TAGAAAGCGCTTTCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: mqo
Ortholog function: malate:quinone oxidoreductase
Staphylococcus capitis SK14 STACA0001_1121 -93 4.7 TAGAAAGCGCTTTAAT
Staphylococcus epidermidis ATCC 12228 SE1943 -81 4.4 GAGAAAGCGCTTTAAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1865 -85 4.5 TAGAAAGCGCTTTCTC
Staphylococcus haemolyticus JCSC1435 SH0693 -77 4.7 AAGAAAGCGTTTTAAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0539 -90 4.1 TAGAAAACGCTTTACT
Position: -254
Score: 4.5
Sequence: GAGAAAGCGCTTTCTA
Locus tag: Sca_1866
Sca_1866 -254 4.5 GAGAAAGCGCTTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SE1944
Ortholog function: putative glycosyltransferase
Staphylococcus capitis SK14 STACA0001_1120 -267 4.7 ATTAAAGCGCTTTCTA
Staphylococcus epidermidis ATCC 12228 SE1944 -245 4.4 ATTAAAGCGCTTTCTC
Staphylococcus carnosus subsp. carnosus TM300 Sca_1866 -254 4.5 GAGAAAGCGCTTTCTA
Staphylococcus haemolyticus JCSC1435 SH0692 -248 4.7 ATTAAAACGCTTTCTT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0538 -318 4.1 AGTAAAGCGTTTTCTA
Position: -47
Score: 4.7
Sequence: ATGAAAGCGTATACTT
Locus tag: Sca_1871
Sca_1871 -47 4.7 ATGAAAGCGTATACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SE0247
Ortholog function: major myo-inositol transporter IolT
Staphylococcus capitis SK14 STACA0001_0048 -61 4.9 ATTAAAACGCTTTCAT
Staphylococcus epidermidis ATCC 12228 SE0247 2 4.3 GTTGAAACGCTTTCAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1871 -47 4.7 ATGAAAGCGTATACTT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0532 -47 4.7 ATGAAAGCGTATACTT
Position: -52
Score: 4.7
Sequence: ATGTAAACGCTTCCTA
Locus tag: Sca_1948
Sca_1948 -52 4.7 ATGTAAACGCTTCCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntP
Ortholog function: gluconate permease
Staphylococcus aureus subsp. aureus N315 SA2293 -79 4.7 AAGAAAGCGCTTGCAA
Staphylococcus capitis SK14 STACA0001_1011 -83 4.7 AAGAAAGCGCTTGCAA
Staphylococcus epidermidis ATCC 12228 SE2044 -83 4.7 AAGAAAGCGCTTGCAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1948 -53 4.7 ATGTAAGCGGTTGCAA
Staphylococcus haemolyticus JCSC1435 SH0576 -81 4.7 AAGAAAGCGTTTGCAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0412 -83 4.6 TTGCAAGCGCTTGCAA
Macrococcus caseolyticus JCSC5402 MCCL_0407 -325 4.6 AcGAAAGCGtTTaCAa
Position: -53
Score: 4.7
Sequence: ATGTAAGCGGTTGCAA
Locus tag: Sca_1950
Sca_1950 -53 4.7 ATGTAAGCGGTTGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntR
Ortholog function: gluconate operon transcriptional repressor
Staphylococcus aureus subsp. aureus N315 SA2295 -79 4.7 AAGAAAGCGCTTGCAA
Staphylococcus capitis SK14 STACA0001_1009 -83 4.7 AAGAAAGCGCTTGCAA
Staphylococcus epidermidis ATCC 12228 SE2046 -83 4.7 AAGAAAGCGCTTGCAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1950 -53 4.7 ATGTAAGCGGTTGCAA
Staphylococcus haemolyticus JCSC1435 SH0574 -81 4.7 AAGAAAGCGTTTGCAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0410 -83 4.6 TTGCAAGCGCTTGCAA
Macrococcus caseolyticus JCSC5402 MCCL_0405 -325 4.6 AcGAAAGCGtTTaCAa
Position: -94
Score: 4.7
Sequence: TTGTAAACGATTTCTA
Locus tag: Sca_1960
Sca_1960 -94 4.7 TTGTAAACGATTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gudP
Ortholog function: glucarate transporter
Staphylococcus aureus subsp. aureus N315 SA2300 -148 4.7 TTGTAAACGCTTTCCA
Staphylococcus capitis SK14 STACA0001_1003 -166 4 TTGTAACCGTTTTCGC
Staphylococcus epidermidis ATCC 12228 SE2056 -164 4.6 TTGTAACCGTTTACAC
Staphylococcus carnosus subsp. carnosus TM300 Sca_1960 -94 4.7 TTGTAAACGATTTCTA
Staphylococcus haemolyticus JCSC1435 SH0566 -241 5 TTGAAAACGATTTCAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0401 -86 5.1 TTGTAAGCGATTTCAT
Macrococcus caseolyticus JCSC5402 MCCL_1800 -82 4.8 TTGTAATCGATTTCAT
Position: -123
Score: 4.8
Sequence: TTGAAATCGTTTACTT
Position: -85
Score: 4
Sequence: ATTTAACCGCTACCAT
Position: -38
Score: 4.2
Sequence: ATGTAAGCGCTATTAA
Locus tag: Sca_1964
Sca_1964 -123 4.8 TTGAAATCGTTTACTT
-85 4 ATTTAACCGCTACCAT
-38 4.2 ATGTAAGCGCTATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fbp
Ortholog function: fructose-bisphosphatase
Staphylococcus aureus subsp. aureus N315 SA2304 -83 4.7 ATGTTAACGTTTTCTT
Staphylococcus capitis SK14 STACA0001_0995 -66 4 ATGTAAGCGCATTACT
Staphylococcus epidermidis ATCC 12228 SE2063 -66 4.3 ATGTAAGCGCATTATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1964 -123 4.8 TTGAAATCGTTTACTT
Staphylococcus haemolyticus JCSC1435 SH0559 -64 4.3 ATGTAAGCGGTTTTAT
Position: -58
Score: 4.3
Sequence: GTGAAAACGGTAACAT
Locus tag: Sca_2017
Sca_2017 -58 4.3 GTGAAAACGGTAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pflB
Ortholog function: Pyruvate formate lyase
Staphylococcus aureus subsp. aureus N315 SA0218 -59 4.9 ATGAAAACGTTAACAT
Staphylococcus epidermidis ATCC 12228 SE0214 -37 4.8 TTGAAAACGTTAACAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_2017 -58 4.3 GTGAAAACGGTAACAT
Macrococcus caseolyticus JCSC5402 MCCL_0434 -94 4.8 TTTTAAACGTTTACAT
Position: -292
Score: 4.7
Sequence: ATGGAAAGGCTTACAT
Locus tag: Sca_2042
Sca_2042 -292 4.7 ATGGAAAGGCTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA1437
Ortholog function: allophanate hydrolase subunit 1
Staphylococcus aureus subsp. aureus N315 SA1437 -50 4.5 ATGAAAAGGTATTCAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_2042 -292 4.7 ATGGAAAGGCTTACAT
Staphylococcus haemolyticus JCSC1435 SH1310 -189 4.8 AAGTAAGCGATTACAT
Position: -47
Score: 4.6
Sequence: TTGCAAGGGCTTACAA
Locus tag: Sca_2085
Sca_2085 -47 4.6 TTGCAAGGGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: arginine deiminase
Staphylococcus carnosus subsp. carnosus TM300 Sca_2085 -47 4.6 TTGCAAGGGCTTACAA
Position: -116
Score: 4.8
Sequence: TTGACAACGCTTTCAT
Locus tag: Sca_2095
Sca_2095 -116 4.8 TTGACAACGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylB
Ortholog function: putative xylulokinase
Staphylococcus carnosus subsp. carnosus TM300 Sca_2095 -116 4.8 TTGACAACGCTTTCAT
-85 4 ATGTAAACGATTGTAT
Staphylococcus haemolyticus JCSC1435 SH0208 -95 4.8 TAGAAAACGCTTTCTT
-37 4.9 ATGATAACGTTTTCAT
Position: -113
Score: 4.3
Sequence: ATGTAAACGTTTTACT
Locus tag: Sca_2103
Sca_2103 -113 4.3 ATGTAAACGTTTTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aldA
Ortholog function: aldehyde dehydrogenase
Staphylococcus aureus subsp. aureus N315 SA0162 -103 5 ATGTAAACGCTTACTA
Staphylococcus capitis SK14 STACA0001_0986 -85 5 AAGTAAACGTTTACAT
Staphylococcus epidermidis ATCC 12228 SE2071 -68 5.1 AaGtAAaCGCTTaCAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_2103 -113 4.3 ATGTAAACGTTTTACT
Staphylococcus haemolyticus JCSC1435 SH0547 -77 5.1 AAGTAAACGCTTACAT
Position: -85
Score: 5.1
Sequence: ATGAAAGCGATTACAA
Locus tag: Sca_2140
Sca_2140 -85 5.1 ATGAAAGCGATTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA0184
Ortholog function: hypothetical protein
Staphylococcus aureus subsp. aureus N315 SA0184 -63 4.8 ATGTAAGCGATTACAC
Staphylococcus capitis SK14 STACA0001_1175 -63 4.5 TTGTAAACGTTTAATA
Staphylococcus carnosus subsp. carnosus TM300 Sca_2140 -85 5.1 ATGAAAGCGATTACAA
Staphylococcus haemolyticus JCSC1435 SH0743 -33 3.8 ATGTAAGTGATTACAG
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0596 -35 4.2 ATGAAACCGATTACAG
Position: -52
Score: 3.8
Sequence: AGGAAAGCGTTATCCT
Locus tag: Sca_2166
Sca_2166 -52 3.8 AGGAAAGCGTTATCCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ipdC
Ortholog function: indole-3-pyruvate decarboxylase homolog
Staphylococcus aureus subsp. aureus N315 SA0182 -97 4.6 TTGTTAGCGTTTTCAC
Staphylococcus carnosus subsp. carnosus TM300 Sca_2166 -52 3.8 AGGAAAGCGTTATCCT
Staphylococcus haemolyticus JCSC1435 SH0376 -41 3.9 TTGTAAGTGTATTCTA
Position: -55
Score: 5
Sequence: TAGAAAGCGTTTACAA
Locus tag: Sca_2251
Sca_2251 -55 5 TAGAAAGCGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcB
Ortholog function: ornithine carbamoyltransferase
Staphylococcus epidermidis ATCC 12228 SE0103 -50 4.6 TTGAAAGCGTTTTATA
Staphylococcus carnosus subsp. carnosus TM300 Sca_2257 -49 4.5 AAGGAAGCGCTTACAC
Position: -272
Score: 4.8
Sequence: AAGAAACCGCTTTCAA
Position: -49
Score: 4.5
Sequence: AAGGAAGCGCTTACAC
Locus tag: Sca_2257
Sca_2257 -272 4.8 AAGAAACCGCTTTCAA
-49 4.5 AAGGAAGCGCTTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcB
Ortholog function: ornithine carbamoyltransferase
Staphylococcus epidermidis ATCC 12228 SE0103 -50 4.6 TTGAAAGCGTTTTATA
Staphylococcus carnosus subsp. carnosus TM300 Sca_2257 -49 4.5 AAGGAAGCGCTTACAC
Position: -64
Score: 4.8
Sequence: TTGAAAGCGGTTTCTT
Locus tag: Sca_2258
Sca_2258 -64 4.8 TTGAAAGCGGTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nhaC
Ortholog function: Na+/H+ antiporter NnaC homolog
Staphylococcus carnosus subsp. carnosus TM300 Sca_2258 -64 4.8 TTGAAAGCGGTTTCTT
Macrococcus caseolyticus JCSC5402 MCCL_1807 -34 5.1 AAGAAAGCGTTTTCAT
Position: -64
Score: 5.1
Sequence: AAGTAAGCGTTTACAT
Locus tag: Sca_2309
Sca_2309 -64 5.1 AAGTAAGCGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cstA
Ortholog function: carbon starvation protein CstA
Staphylococcus carnosus subsp. carnosus TM300 Sca_2309 -64 5.1 AAGTAAGCGTTTACAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2440 -39 5 AAGAAAACGCTTTCAA
Position: -60
Score: 5.3
Sequence: TTGTAAGCGTTTACAT
Locus tag: Sca_2373
Sca_2373 -60 5.3 TTGTAAGCGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SH0372
Ortholog function: hypothetical Zn-dependent hydrolase
Staphylococcus carnosus subsp. carnosus TM300 Sca_2373 -60 5.3 TTGTAAGCGTTTACAT
Staphylococcus haemolyticus JCSC1435 SH0372 -29 5.3 ATGAAAACGTTTTCAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0236 -56 5.2 TTGTAAACGTTTACAA
Position: -109
Score: 4.9
Sequence: ATGATAGCGTTTACAA
Locus tag: Sca_2389
Sca_2389 -109 4.9 ATGATAGCGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nanA
Ortholog function: N-acetylneuraminate lyase
Staphylococcus aureus subsp. aureus N315 SA0304 -64 4.9 ATGATAGCGTTTACAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_2389 -109 4.9 ATGATAGCGTTTACAA
Staphylococcus haemolyticus JCSC1435 SH0282 -108 4.9 ATGATAGCGTTTACAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0375 -182 4.6 ATGGTAGCGTTTACAA
Position: -152
Score: 4.9
Sequence: TTGTAAACGCTATCAT
Locus tag: Sca_2390
Sca_2390 -152 4.9 TTGTAAACGCTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nanK
Ortholog function: predicted N-acetyl-D-mannosamine kinase, ROK family
Staphylococcus aureus subsp. aureus N315 SA0305 -109 4.9 TTGTAAACGCTATCAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_2390 -152 4.9 TTGTAAACGCTATCAT
Staphylococcus haemolyticus JCSC1435 SH0281 -150 4.9 TTGTAAACGCTATCAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0374 -157 4.6 TTGTAAACGCTACCAT
Position: -61
Score: 4.9
Sequence: TTGTAAGGGTTTACAT
Locus tag: Sca_2406
Sca_2406 -61 4.9 TTGTAAGGGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadX
Ortholog function: putative acetyl-CoA transferase
Staphylococcus aureus subsp. aureus N315 SA0227 -64 4.6 TTGTAAGGGTTTACAC
Staphylococcus carnosus subsp. carnosus TM300 Sca_2406 -61 4.9 TTGTAAGGGTTTACAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2427 -91 5 ATGTAAGGGCTTACAT
Position: -63
Score: 5.3
Sequence: ATGTAAGCGTTTACAA
Locus tag: Sca_2408
Sca_2408 -63 5.3 ATGTAAGCGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA0225
Ortholog function: short-chain acyl-CoA oxidase
Staphylococcus aureus subsp. aureus N315 SA0225 -86 4.9 GTGTAAGCGTTTACAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_2408 -63 5.3 ATGTAAGCGTTTACAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2425 -36 4.6 ATGTAAGCGCAATCAT
Position: -40
Score: 4.6
Sequence: ATGAAAACGTTTTCGT
Locus tag: Sca_2417
Sca_2417 -40 4.6 ATGAAAACGTTTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gutB
Ortholog function: putative zinc-binding dehydrogenase
Staphylococcus carnosus subsp. carnosus TM300 Sca_2417 -40 4.6 ATGAAAACGTTTTCGT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0524 -37 5 ATGAAAGCGTTTTCTA
Position: -151
Score: 4.6
Sequence: ACGAAAACGTTTTCAT
Locus tag: Sca_2418
Sca_2418 -151 4.6 ACGAAAACGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SSP0523
Ortholog function: putative regulatory protein (DeoR family)
Staphylococcus carnosus subsp. carnosus TM300 Sca_2418 -151 4.6 ACGAAAACGTTTTCAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0523 -151 5 TAGAAAACGCTTTCAT
Position: -101
Score: 4.9
Sequence: ATGAAAGCGTATACAT
Locus tag: Sca_2421
Sca_2421 -101 4.9 ATGAAAGCGTATACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsU
Ortholog function: ribose transporter RbsU
Staphylococcus aureus subsp. aureus N315 SA0260 -86 4.6 ATGAAAACGCATGCAT
Staphylococcus capitis SK14 STACA0001_0973 -84 4 GTGTAAGCGTATACAG
Staphylococcus epidermidis ATCC 12228 SE2088 -87 4.6 GTGTAAGCGTATACAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_2421 -101 4.9 ATGAAAGCGTATACAT
Position: -39
Score: 5
Sequence: ATGTTAGCGCTTACAA
Position: 6
Score: 4.3
Sequence: ATTTTAGCGATTACAT
Locus tag: Sca_2440
Sca_2440 -39 5 ATGTTAGCGCTTACAA
6 4.3 ATTTTAGCGATTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: manP
Ortholog function: PTS system mannose-specific EIIBCA component
Staphylococcus aureus subsp. aureus N315 SA2434 -37 4.3 GAGAATACGCTTACAA
Staphylococcus capitis SK14 STACA0001_1506 -40 4.6 TTGAATACGCTTACAC
Staphylococcus epidermidis ATCC 12228 SE2228 -45 4.9 ATGTATGCGTTTACAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_2440 -39 5 ATGTTAGCGCTTACAA
6 4.3 ATTTTAGCGATTACAT
Position: -58
Score: 4.7
Sequence: ATGTAAGCGTATACTT
Locus tag: Sca_2466
Sca_2466 -58 4.7 ATGTAAGCGTATACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutH
Ortholog function: histidine ammonia-lyase
Staphylococcus aureus subsp. aureus N315 SA0008 -59 4.6 ATGAAAACGTATACTT
Staphylococcus capitis SK14 STACA0001_1368 -57 4.6 ATGAAAACGTATACTT
Staphylococcus carnosus subsp. carnosus TM300 Sca_2466 -58 4.7 ATGTAAGCGTATACTT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0008 -56 4.3 ATGTAAGCGTATACTC
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