Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Rex regulog to Staphylococcus epidermidis ATCC 12228

Reference regulog properties
Source regulog: Rex - Staphylococcaceae
Regulator type: Transcription factor
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Phylum: Firmicutes
Propagated regulon:
Target genome Staphylococcus epidermidis ATCC 12228
Orthologous TF(s) SE1647
Regulated genes 13
Built upon 74 sites [see more]
Predicted regulatory interactions in Staphylococcus epidermidis ATCC 12228
Locus tag Position Score Sequence
Position: -76
Score: 5.5
Sequence: TTGTGAATTAAATCACAC
Locus tag: SE0106
SE0106 -76 5.5 TTGTGAATTAAATCACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: Arginine deiminase (EC 3.5.3.6)
Staphylococcus epidermidis ATCC 12228 SE0106 -76 5.5 TTGTGAATTAAATCACAC
Staphylococcus haemolyticus JCSC1435 SH0367 -76 5.5 ATGTGAAAACAATCACAT
Position: -74
Score: 5.8
Sequence: ATGTGAAATTAATCACAT
Locus tag: SE0214
SE0214 -74 5.8 ATGTGAAATTAATCACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pflB
Ortholog function: Pyruvate formate-lyase (EC 2.3.1.54)
Staphylococcus aureus subsp. aureus N315 SA0218 -96 6 ATGTGAAAAAAATCACAA
Staphylococcus epidermidis ATCC 12228 SE0214 -74 5.8 ATGTGAAATTAATCACAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_2017 -93 5.3 AAGTGATTTTTTTCACAA
Macrococcus caseolyticus JCSC5402 MCCL_0434 -74 4.7 TTGTGATACTTTTCACGT
Position: -38
Score: 6.1
Sequence: TTGTGAATTATTTCACAA
Locus tag: SE0506
SE0506 -38 6.1 TTGTGAATTATTTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10)
Staphylococcus aureus subsp. aureus N315 SA0143 -39 6.3 TTGTGAAATAATTCACAA
Staphylococcus epidermidis ATCC 12228 SE0506 -38 6.1 TTGTGAATTATTTCACAA
Position: -104
Score: 4.9
Sequence: TTGATATTTTTTTCACAA
Locus tag: SE1176
SE1176 -104 4.9 TTGATATTTTTTTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: srrA
Ortholog function: Staphylococcal respiratory response protein SrrA
Staphylococcus aureus subsp. aureus N315 SA1323 -103 5.6 TTGAGAATTTTTTCACAA
Staphylococcus capitis SK14 STACA0001_1733 -106 5.2 TTGAGATTTTTTTCACAT
Staphylococcus epidermidis ATCC 12228 SE1176 -104 4.9 TTGATATTTTTTTCACAA
Staphylococcus haemolyticus JCSC1435 SH1424 -101 4.8 TTGCTATTTTTTTCACAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1260 -105 5.1 ATGATAATTTTTTCACAA
Position: -149
Score: 4.9
Sequence: ATGTTCATATTTTCACAA
Locus tag: SE1968
SE1968 -149 4.9 ATGTTCATATTTTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narK
Ortholog function: nitrate-nitrite antiporter
Staphylococcus aureus subsp. aureus N315 SA2176 -168 4.6 ATGTTCACTTTTTCACAA
Staphylococcus capitis SK14 STACA0001_1087 -156 4.9 ATGTTCATTTTTTCACAA
Staphylococcus epidermidis ATCC 12228 SE1968 -149 4.9 ATGTTCATATTTTCACAA
Staphylococcus haemolyticus JCSC1435 SH0661 -125 4.9 ATGTTCATTTTTTCACAA
Macrococcus caseolyticus JCSC5402 MCCL_0144 -73 5.1 ATGTTAAACTTATCACAA
Position: -86
Score: 5.5
Sequence: TTGTGAAAAAATGTACAA
Locus tag: SE1975
SE1975 -86 5.5 TTGTGAAAAAATGTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narG
Ortholog function: Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
Staphylococcus aureus subsp. aureus N315 SA2185 -107 5.5 TTGTGAAAAAATGTACAA
Staphylococcus capitis SK14 STACA0001_1080 -89 5.5 TTGTGAAAAAATGTACAA
Staphylococcus epidermidis ATCC 12228 SE1975 -86 5.5 TTGTGAAAAAATGTACAA
Staphylococcus haemolyticus JCSC1435 SH0654 -91 5.3 ATGTGAAAAATTGTACAA
Macrococcus caseolyticus JCSC5402 MCCL_0136 -58 5.4 TTGTGAAAAGTTTCATAA
Position: -145
Score: 5.6
Sequence: ATGTGAATTACATCACAA
Locus tag: SE1978
SE1978 -145 5.6 ATGTGAATTACATCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nasD
Ortholog function: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Staphylococcus aureus subsp. aureus N315 SA2188 -64 5.3 ATGTGATTCTTTTCACAA
Staphylococcus capitis SK14 STACA0001_1077 -64 6 ATGTGAATAAAATCACAA
Staphylococcus epidermidis ATCC 12228 SE1978 -145 5.6 ATGTGAATTACATCACAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1897 -64 5.7 TTGTGAATACATTCACAT
Staphylococcus haemolyticus JCSC1435 SH0651 -141 5.6 TTGTGAAAATCATCACAT
Macrococcus caseolyticus JCSC5402 MCCL_1340 -91 5.8 ATGTGAACATATTCACAA
Position: -91
Score: 5.7
Sequence: TTGTGAAATGTATCACAA
Locus tag: SE2038
SE2038 -91 5.7 TTGTGAAATGTATCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA2268
Ortholog function: conserved hypothetical protein
Staphylococcus aureus subsp. aureus N315 SA2268 -129 5.7 TTGTGAAATACATCACAA
Staphylococcus capitis SK14 STACA0001_1015 -94 5.7 TTGTGAAAAGTATCACAA
Staphylococcus epidermidis ATCC 12228 SE2038 -91 5.7 TTGTGAAATGTATCACAA
Staphylococcus haemolyticus JCSC1435 SH0583 -87 5.7 TTGTGAAAAGTATCACAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0417 -107 6.1 TTGTGAAATTAATCACAA
Position: -164
Score: 5.3
Sequence: ATGTGATTTAATTCACTA
Locus tag: SE2073
SE2073 -164 5.3 ATGTGATTTAATTCACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: frp
Ortholog function: NAD(P)H-flavin oxidoreductase
Staphylococcus aureus subsp. aureus N315 SA2311 -185 6 TTGTGAAAAATATCACAA
Staphylococcus capitis SK14 STACA0001_0985 -197 5.8 TTGTGAAAGTTTTCACAA
Staphylococcus epidermidis ATCC 12228 SE2073 -208 4.9 TAGTAAAAACATTCACAA
-164 5.3 ATGTGATTTAATTCACTA
Staphylococcus haemolyticus JCSC1435 SH0546 -182 6.2 TTGTGAATTTATTCACAA
-133 5.6 TTGTTAAAAAATTCACAT
Position: -100
Score: 5.5
Sequence: TAGTGAATTAAATCACAT
Locus tag: SE2074
SE2074 -100 5.5 TAGTGAATTAAATCACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ddh
Ortholog function: D-lactate dehydrogenase (EC 1.1.1.28)
Staphylococcus aureus subsp. aureus N315 SA2312 -39 5.9 TTGTGATATTTTTCACAA
Staphylococcus capitis SK14 STACA0001_0984 -119 5.8 TTGTGAAAACTTTCACAA
Staphylococcus epidermidis ATCC 12228 SE2074 -100 5.5 TAGTGAATTAAATCACAT
-56 4.9 TTGTGAATGTTTTTACTA
Staphylococcus carnosus subsp. carnosus TM300 Sca_2121 -81 6 TTGTGAATATATTCACAT
Staphylococcus haemolyticus JCSC1435 SH0545 -203 5.5 ATGTGAATTTTTTAACAA
-154 6.2 TTGTGAATAAATTCACAA
Position: -37
Score: 5.4
Sequence: TTGCGAAAAATTTCACAT
Locus tag: SE2098
SE2098 -37 5.4 TTGCGAAAAATTTCACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhB
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1), Zn-dependent
Staphylococcus capitis SK14 STACA0001_0960 -36 6.2 TTGTGAAAATATTCACAA
Staphylococcus epidermidis ATCC 12228 SE2098 -37 5.4 TTGCGAAAAATTTCACAT
Staphylococcus haemolyticus JCSC1435 SH0522 -38 6.1 TTGTGAAAATATTCACAT
Position: -76
Score: 4.8
Sequence: ATGTGATAATCATCACGA
Locus tag: SE2217
SE2217 -76 4.8 ATGTGATAATCATCACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: Arginine deiminase (EC 3.5.3.6)
Staphylococcus aureus subsp. aureus N315 SA2428 -79 5.8 ATGTGAATATAATCACAT
Staphylococcus capitis SK14 STACA0001_1845 -77 5.9 TTGTGAATATAATCACAT
Staphylococcus epidermidis ATCC 12228 SE2217 -76 4.8 ATGTGATAATCATCACGA
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