Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of ArgR regulog to Staphylococcus epidermidis ATCC 12228

Reference regulog properties
Source regulog: ArgR - Staphylococcaceae
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor
Biological process: Arginine biosynthesis; Arginine degradation
Effector: Arginine
Phylum: Firmicutes
Propagated regulon:
Target genome Staphylococcus epidermidis ATCC 12228
Orthologous TF(s) SE1201
Regulated genes 11
Built upon 65 sites [see more]
Predicted regulatory interactions in Staphylococcus epidermidis ATCC 12228
Locus tag Position Score Sequence
Position: 0
Score: 4.1
Sequence: ATGGATGAAAATAAAT
Locus tag: SE0105
SE0105 0 4.1 ATGGATGAAAATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcD
Ortholog function: arginine/ornithine antiporter
Staphylococcus carnosus subsp. carnosus TM300 Sca_2084 -314 4.8 ATAAATTAATATTCAT
Staphylococcus haemolyticus JCSC1435 SH0368 -139 4.1 TTGTATATTCAATCAA
Position: -243
Score: 4.1
Sequence: ATGATTACTAATACAA
Position: -140
Score: 4.1
Sequence: ATACATATTCATACAA
Position: -115
Score: 4.2
Sequence: TTGAATAAATCTATAT
Locus tag: SE0106
SE0106 -243 4.1 ATGATTACTAATACAA
-140 4.1 ATACATATTCATACAA
-115 4.2 TTGAATAAATCTATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: arginine deiminase
Staphylococcus haemolyticus JCSC1435 SH0367 -139 4.1 TTGTATATTCAATCAA
Position: -96
Score: 4.5
Sequence: ATGAATATTTATGTAA
Position: -35
Score: 4.4
Sequence: ATTAATAATCATAAAA
Locus tag: SE0657
SE0657 -96 4.5 ATGAATATTTATGTAA
-35 4.4 ATTAATAATCATAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argG
Ortholog function: argininosuccinate synthase
Staphylococcus aureus subsp. aureus N315 SA0822 -97 4.5 ATGAATAAATATGTAA
Staphylococcus capitis SK14 STACA0001_0165 -98 4.3 tTGaATAtTTATgtAa
Staphylococcus epidermidis ATCC 12228 SE0657 -96 4.5 ATGAATATTTATGTAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0569 -99 4.3 TTGTATATTTATGTAA
Staphylococcus haemolyticus JCSC1435 SH1989 -95 4.3 TTGTATATTTATGTAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1814 -110 4.5 ATGcATAtTTATgtAT
Macrococcus caseolyticus JCSC5402 MCCL_0587 -96 5.1 ATGAATAATTATACTT
-50 5 ATGTATATTAATTAAT
Position: -24
Score: 5.3
Sequence: ATGTATAAATATTCGT
Locus tag: SE1201
SE1201 -24 5.3 ATGTATAAATATTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ahrC
Ortholog function: arginine repressor
Staphylococcus aureus subsp. aureus N315 SA1351 -47 4.1 ATGTGTTAAAATAAAT
-33 5.3 ATGTATAAATATTCGT
Staphylococcus capitis SK14 STACA0001_1758 -33 5 TTGTATAAATATTCGT
Staphylococcus epidermidis ATCC 12228 SE1201 -38 3.7 ATGTGTTAAAATCAAT
-24 5.3 ATGTATAAATATTCGT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1144 -34 5.3 ATGTATAAATATTCGT
Staphylococcus haemolyticus JCSC1435 SH1395 -33 4.8 TTGTATAATTATTCGA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1234 -33 5.3 ATGTATAAATATTCGT
Macrococcus caseolyticus JCSC5402 MCCL_1165 -29 4.6 ATGTATAAATATGCAC
Position: -50
Score: 4.5
Sequence: ATTAATAAATATGTAT
Position: -40
Score: 4.7
Sequence: ATGTATATAATTACAT
Locus tag: SE1212
SE1212 -50 4.5 ATTAATAAATATGTAT
-40 4.7 ATGTATATAATTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetylglutamate gamma-semialdehyde dehydrogenase
Staphylococcus aureus subsp. aureus N315 SA0178 -51 4.6 ATATATTAATATTAAT
-47 4.5 ATTAATATTAATTCTT
-27 4.4 TTGTATAAATATAAAG
Staphylococcus epidermidis ATCC 12228 SE1212 -50 4.5 ATTAATAAATATGTAT
-40 4.7 ATGTATATAATTACAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0221 -105 3.8 AAGTGTAAAAATTCAA
-54 4.5 ATTTATGAATATTAAT
-50 5.2 ATGAATATTAATTCAT
Position: -51
Score: 4.4
Sequence: ATGTTTATTTATGTAT
Position: -41
Score: 4.6
Sequence: ATGTATAATAATGTAT
Position: -31
Score: 5.1
Sequence: ATGTATAATTATTAAA
Locus tag: SE1541
SE1541 -51 4.4 ATGTTTATTTATGTAT
-41 4.6 ATGTATAATAATGTAT
-31 5.1 ATGTATAATTATTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: artPQ
Ortholog function: Arginine ABC transporter, substrate-binding and permease protein
Staphylococcus aureus subsp. aureus N315 SA1675 -220 4.6 ATTGATAAAAATACAT
-181 4.6 ATGTATTAATATGTAT
-171 5.1 ATGTATAATTATGAAT
-165 4 AATTATGAATATTAAT
-161 4.1 ATGAATATTAATTAGG
Staphylococcus capitis SK14 STACA0001_0720 -61 4.3 TTGCATTATTATAAGT
-41 4.6 ATGTATAATAATGTAT
-31 4.5 ATGTATATTTATTTAG
Staphylococcus epidermidis ATCC 12228 SE1541 -45 4 ATTTATGTATAATAAT
-41 4.6 ATGTATAATAATGTAT
-31 5.1 ATGTATAATTATTAAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1432 -56 4.4 TTGCATATTAATACGT
-36 4.2 ATGTATAATAATTCTG
Staphylococcus haemolyticus JCSC1435 SH1104 -55 4.2 TTGTATATTAATGCGA
-35 4.2 GTGTATAATAATGAAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0937 -57 4.2 TTGAATATTATTTCGT
-37 4.8 ATGTATAATAATGAAT
Macrococcus caseolyticus JCSC5402 MCCL_1584 -56 4.6 TTGTATAATTATTCTA
Position: -148
Score: 4.7
Sequence: TTATATAATTATTCAA
Locus tag: SE2168
SE2168 -148 4.7 TTATATAATTATTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cudT
Ortholog function: choline transporter
Staphylococcus aureus subsp. aureus N315 SA2408 -288 4.8 ATAAATAAATATTCGT
-267 4.8 ACGTATAAATATTCTT
-157 4.6 TTATATAAATATTCAA
-112 4.2 TTGCATTATTATTAAA
Staphylococcus epidermidis ATCC 12228 SE2168 -148 4.7 TTATATAATTATTCAA
-103 4.2 TTGCATTATTATTAAA
-26 3.7 ATAAATTAATATTAGG
Staphylococcus carnosus subsp. carnosus TM300 Sca_2165 -282 4.9 AAGAATAATTATACAA
-176 5.1 ATATATATTTATTCAT
-132 4.5 TTGCATTATTATAAAT
Staphylococcus haemolyticus JCSC1435 SH0426 -261 4.7 ATAAATATAAATTCAT
-133 4.9 ATATATATTTATTCAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0193 -274 4.9 ATGAATAAAGATACAT
-167 4.9 TTATATAAATATTCAT
-32 4.2 AGTTATAAAAATAAAT
Position: -72
Score: 4.5
Sequence: ATCTATATATATGCAT
Locus tag: SE2215
SE2215 -72 4.5 ATCTATATATATGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcD
Ortholog function: arginine/ornithine antiporter
Staphylococcus aureus subsp. aureus N315 SA2426 -142 4.9 ATGTATAAAAATCCAT
Staphylococcus capitis SK14 STACA0001_1843 -243 4.1 TTGACTAACTATTCAT
-140 4.6 ATGTATAAACAATCAT
Staphylococcus epidermidis ATCC 12228 SE2215 -72 4.5 ATCTATATATATGCAT
Position: -267
Score: 3.8
Sequence: TTCAATAAATATGAGT
Position: -243
Score: 3.8
Sequence: TTGACTAAGTATTCAA
Position: -233
Score: 3.9
Sequence: ATTCAAATTTATGAAT
Position: -227
Score: 3.9
Sequence: ATTTATGAATAAAAAA
Position: -143
Score: 3.8
Sequence: AGTAATGTATATTCAA
Position: -139
Score: 4
Sequence: ATGTATATTCAAACAC
Locus tag: SE2217
SE2217 -267 3.8 TTCAATAAATATGAGT
-243 3.8 TTGACTAAGTATTCAA
-233 3.9 ATTCAAATTTATGAAT
-227 3.9 ATTTATGAATAAAAAA
-143 3.8 AGTAATGTATATTCAA
-139 4 ATGTATATTCAAACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: arginine deiminase
Staphylococcus aureus subsp. aureus N315 SA2428 -142 4.9 ATGTATAAAAATCCAT
Staphylococcus capitis SK14 STACA0001_1845 -243 4.1 TTGACTAACTATTCAT
-140 4.6 ATGTATAAACAATCAT
Staphylococcus epidermidis ATCC 12228 SE2217 -267 3.8 TTCAATAAATATGAGT
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