Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Rex regulog to Staphylococcus capitis SK14

Reference regulog properties
Source regulog: Rex - Staphylococcaceae
Regulator type: Transcription factor
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Phylum: Firmicutes
Propagated regulon:
Target genome Staphylococcus capitis SK14
Orthologous TF(s) STACA0001_0533
Regulated genes 10
Built upon 74 sites [see more]
Predicted regulatory interactions in Staphylococcus capitis SK14
Locus tag Position Score Sequence
Position: -36
Score: 6.2
Sequence: TTGTGAAAATATTCACAA
Locus tag: STACA0001_0960
STACA0001_0960 -36 6.2 TTGTGAAAATATTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhB
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1), Zn-dependent
Staphylococcus capitis SK14 STACA0001_0960 -36 6.2 TTGTGAAAATATTCACAA
Staphylococcus epidermidis ATCC 12228 SE2098 -37 5.4 TTGCGAAAAATTTCACAT
Staphylococcus haemolyticus JCSC1435 SH0522 -38 6.1 TTGTGAAAATATTCACAT
Position: -119
Score: 5.8
Sequence: TTGTGAAAACTTTCACAA
Locus tag: STACA0001_0984
STACA0001_0984 -119 5.8 TTGTGAAAACTTTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ddh
Ortholog function: D-lactate dehydrogenase (EC 1.1.1.28)
Staphylococcus aureus subsp. aureus N315 SA2312 -39 5.9 TTGTGATATTTTTCACAA
Staphylococcus capitis SK14 STACA0001_0984 -119 5.8 TTGTGAAAACTTTCACAA
Staphylococcus epidermidis ATCC 12228 SE2074 -100 5.5 TAGTGAATTAAATCACAT
-56 4.9 TTGTGAATGTTTTTACTA
Staphylococcus carnosus subsp. carnosus TM300 Sca_2121 -81 6 TTGTGAATATATTCACAT
Staphylococcus haemolyticus JCSC1435 SH0545 -203 5.5 ATGTGAATTTTTTAACAA
-154 6.2 TTGTGAATAAATTCACAA
Position: -197
Score: 5.8
Sequence: TTGTGAAAGTTTTCACAA
Locus tag: STACA0001_0985
STACA0001_0985 -197 5.8 TTGTGAAAGTTTTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: frp
Ortholog function: NAD(P)H-flavin oxidoreductase
Staphylococcus aureus subsp. aureus N315 SA2311 -185 6 TTGTGAAAAATATCACAA
Staphylococcus capitis SK14 STACA0001_0985 -197 5.8 TTGTGAAAGTTTTCACAA
Staphylococcus epidermidis ATCC 12228 SE2073 -208 4.9 TAGTAAAAACATTCACAA
-164 5.3 ATGTGATTTAATTCACTA
Staphylococcus haemolyticus JCSC1435 SH0546 -182 6.2 TTGTGAATTTATTCACAA
-133 5.6 TTGTTAAAAAATTCACAT
Position: -94
Score: 5.7
Sequence: TTGTGAAAAGTATCACAA
Locus tag: STACA0001_1015
STACA0001_1015 -94 5.7 TTGTGAAAAGTATCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA2268
Ortholog function: conserved hypothetical protein
Staphylococcus aureus subsp. aureus N315 SA2268 -129 5.7 TTGTGAAATACATCACAA
Staphylococcus capitis SK14 STACA0001_1015 -94 5.7 TTGTGAAAAGTATCACAA
Staphylococcus epidermidis ATCC 12228 SE2038 -91 5.7 TTGTGAAATGTATCACAA
Staphylococcus haemolyticus JCSC1435 SH0583 -87 5.7 TTGTGAAAAGTATCACAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0417 -107 6.1 TTGTGAAATTAATCACAA
Position: -64
Score: 6
Sequence: ATGTGAATAAAATCACAA
Locus tag: STACA0001_1076
STACA0001_1076 -64 6 ATGTGAATAAAATCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirR
Ortholog function: Sirohydrochlorin ferrochelatase (EC 4.99.1.4)
Staphylococcus aureus subsp. aureus N315 SA2189 -64 5.3 ATGTGATTCTTTTCACAA
Staphylococcus capitis SK14 STACA0001_1076 -64 6 ATGTGAATAAAATCACAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1899 -64 5.7 TTGTGAATACATTCACAT
Macrococcus caseolyticus JCSC5402 MCCL_1342 -91 5.8 ATGTGAACATATTCACAA
Position: -89
Score: 5.5
Sequence: TTGTGAAAAAATGTACAA
Locus tag: STACA0001_1080
STACA0001_1080 -89 5.5 TTGTGAAAAAATGTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narG
Ortholog function: Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
Staphylococcus aureus subsp. aureus N315 SA2185 -107 5.5 TTGTGAAAAAATGTACAA
Staphylococcus capitis SK14 STACA0001_1080 -89 5.5 TTGTGAAAAAATGTACAA
Staphylococcus epidermidis ATCC 12228 SE1975 -86 5.5 TTGTGAAAAAATGTACAA
Staphylococcus haemolyticus JCSC1435 SH0654 -91 5.3 ATGTGAAAAATTGTACAA
Macrococcus caseolyticus JCSC5402 MCCL_0136 -58 5.4 TTGTGAAAAGTTTCATAA
Position: -156
Score: 4.9
Sequence: ATGTTCATTTTTTCACAA
Locus tag: STACA0001_1087
STACA0001_1087 -156 4.9 ATGTTCATTTTTTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narK
Ortholog function: nitrate-nitrite antiporter
Staphylococcus aureus subsp. aureus N315 SA2176 -168 4.6 ATGTTCACTTTTTCACAA
Staphylococcus capitis SK14 STACA0001_1087 -156 4.9 ATGTTCATTTTTTCACAA
Staphylococcus epidermidis ATCC 12228 SE1968 -149 4.9 ATGTTCATATTTTCACAA
Staphylococcus haemolyticus JCSC1435 SH0661 -125 4.9 ATGTTCATTTTTTCACAA
Macrococcus caseolyticus JCSC5402 MCCL_0144 -73 5.1 ATGTTAAACTTATCACAA
Position: -129
Score: 5.9
Sequence: TTGTGAAAAAGTTCACAA
Locus tag: STACA0001_1119
STACA0001_1119 -129 5.9 TTGTGAAAAAGTTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lctP
Ortholog function: L-lactate permease
Staphylococcus aureus subsp. aureus N315 SA2156 -124 6 TTGTGAAAAAAATCACAT
Staphylococcus capitis SK14 STACA0001_1119 -129 5.9 TTGTGAAAAAGTTCACAA
Staphylococcus haemolyticus JCSC1435 SH0691 -161 5.9 TTGTGAAAAAGTTCACAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0537 -76 6.3 TTGTGAAAAAATTCACAA
Position: -106
Score: 5.2
Sequence: TTGAGATTTTTTTCACAT
Locus tag: STACA0001_1733
STACA0001_1733 -106 5.2 TTGAGATTTTTTTCACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: srrA
Ortholog function: Staphylococcal respiratory response protein SrrA
Staphylococcus aureus subsp. aureus N315 SA1323 -103 5.6 TTGAGAATTTTTTCACAA
Staphylococcus capitis SK14 STACA0001_1733 -106 5.2 TTGAGATTTTTTTCACAT
Staphylococcus epidermidis ATCC 12228 SE1176 -104 4.9 TTGATATTTTTTTCACAA
Staphylococcus haemolyticus JCSC1435 SH1424 -101 4.8 TTGCTATTTTTTTCACAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1260 -105 5.1 ATGATAATTTTTTCACAA
Position: -77
Score: 5.9
Sequence: TTGTGAATATAATCACAT
Locus tag: STACA0001_1845
STACA0001_1845 -77 5.9 TTGTGAATATAATCACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: Arginine deiminase (EC 3.5.3.6)
Staphylococcus aureus subsp. aureus N315 SA2428 -79 5.8 ATGTGAATATAATCACAT
Staphylococcus capitis SK14 STACA0001_1845 -77 5.9 TTGTGAATATAATCACAT
Staphylococcus epidermidis ATCC 12228 SE2217 -76 4.8 ATGTGATAATCATCACGA
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