Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Staphylococcus epidermidis RP62A

Reference regulog properties
Source regulog: Fur - Staphylococcaceae
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Firmicutes
Propagated regulon:
Target genome Staphylococcus epidermidis RP62A
Orthologous TF(s) SERP1061
Regulated genes 10
Built upon 106 sites [see more]
Predicted regulatory interactions in Staphylococcus epidermidis RP62A
Locus tag Position Score Sequence
Position: -119
Score: 6.2
Sequence: TGTGATAATGATTATCAAT
Locus tag: SERP0306
SERP0306 -119 6.2 TGTGATAATGATTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuA
Ortholog function: ferrichrome transport ATP-binding protein FhuA
Staphylococcus aureus subsp. aureus N315 SA0602 -102 6.2 CATGATAATCATTATCAAT
Staphylococcus capitis SK14 STACA0001_0381 -109 6.4 TATGATAATGATTATCAAT
Staphylococcus epidermidis ATCC 12228 SE0421 -119 6.2 TGTGATAATGATTATCAAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0295 -222 6.4 TATGATAATGATTATCAAT
Staphylococcus haemolyticus JCSC1435 SH2247 -69 6.3 TATGATAATTATTATCAAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2073 -111 6.3 TATGATAATGATTATCATT
Macrococcus caseolyticus JCSC5402 MCCL_0166 -46 6.8 ATTGATAATCATTATCAAT
Position: -44
Score: 6
Sequence: ATTGATAATGGTTATCATG
Locus tag: SERP0482
SERP0482 -44 6 ATTGATAATGGTTATCATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA0757
Ortholog function: putative NAD(P)H nitroreductase
Staphylococcus aureus subsp. aureus N315 SA0757 -41 5.6 ATTGAGAAGTATTATCATT
Staphylococcus capitis SK14 STACA0001_0225 -42 5.8 ATTGATAATTGTTATCAAC
Staphylococcus epidermidis ATCC 12228 SE0593 -44 6 ATTGATAATGGTTATCATG
Staphylococcus carnosus subsp. carnosus TM300 Sca_0449 -39 6.7 AATGATAATGATTATCATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1872 -38 6 ATTGAAAATAGTTATCATT
Macrococcus caseolyticus JCSC5402 MCCL_0533 -41 6.4 ATTGATAATAGTTATCAAT
Position: -217
Score: 4.8
Sequence: ATTTAAAATGATGTTCATT
Position: -211
Score: 4.9
Sequence: AATGATGTTCATTATTGAT
Position: -198
Score: 6.1
Sequence: ATTGATAACCATTCTCAAT
Locus tag: SERP0921
SERP0921 -217 4.8 ATTTAAAATGATGTTCATT
-211 4.9 AATGATGTTCATTATTGAT
-198 6.1 ATTGATAACCATTCTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: citB
Ortholog function: aconitate hydratase
Staphylococcus aureus subsp. aureus N315 SA1184 -198 6.3 ATTGATAATTATTCTCAAT
Staphylococcus capitis SK14 STACA0001_1597 -198 6.1 ATTGATAACCATTCTCAAT
Staphylococcus epidermidis ATCC 12228 SE1032 -198 6.1 ATTGATAACCATTCTCAAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0991 -190 5.6 ATTGAAAACAATTCTCAAT
Staphylococcus haemolyticus JCSC1435 SH1558 -202 6 AATGAAAATCATTCTCAAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1408 -193 4.8 GCTGATAATGATTCTCAAC
Position: -50
Score: 6.5
Sequence: ATTGAAAATGATTATCAAT
Locus tag: SERP0949
SERP0949 -50 6.5 ATTGAAAATGATTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sstD2
Ortholog function: putative siderophore ABC transporter
Staphylococcus haemolyticus JCSC1435 SH1529 -51 6.5 ATTGAAAATGATTATCAAT
Position: -256
Score: 6.5
Sequence: ATTGATAATCATTTTCAAT
Position: -223
Score: 6.2
Sequence: ATTGATAATGATTGTCAAT
Locus tag: SERP0989
SERP0989 -256 6.5 ATTGATAATCATTTTCAAT
-223 6.2 ATTGATAATGATTGTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: arlR
Ortholog function: response regulator ArlR
Staphylococcus aureus subsp. aureus N315 SA1248 -619 5.9 ATTGATAATCATTtTCAAc
-586 5.5 AgTGAgAATCATTgTCAAT
Staphylococcus capitis SK14 STACA0001_1664 -289 5.3 ATTGATAATCATTTACAAC
-256 5.8 ATTGAGAATCATTGTCAAT
Staphylococcus epidermidis ATCC 12228 SE1100 28 6.5 ATTGATAATCATTtTCAAT
61 6.2 ATTGATAATGATTgTCAAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1060 -185 5.9 ATTGATAATCATTTTCAAG
-152 6.2 ATTGATAATGATTGTCAAT
Staphylococcus haemolyticus JCSC1435 SH1490 -245 6.1 ATTGATAATCATTTTCAAA
-212 6.2 ATTGATAATCATTGTCAAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1323 -207 6.5 ATTGATAATCATTTTCAAT
Macrococcus caseolyticus JCSC5402 MCCL_1066 -185 5.9 AATGAAAATGATTCTCATT
Position: -128
Score: 5.2
Sequence: AATTAGAATAATTATTAAT
Position: -86
Score: 5.1
Sequence: AATTAGAATAATTATTATT
Locus tag: SERP1431
SERP1431 -128 5.2 AATTAGAATAATTATTAAT
-86 5.1 AATTAGAATAATTATTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ftnA
Ortholog function: ferritin
Staphylococcus aureus subsp. aureus N315 SA1709 -198 5.7 AATTATAATCATTCTCATT
-167 5.8 AATGATATTTATTCTCAAT
-94 5.5 AATTATAATTATTATTATT
Staphylococcus capitis SK14 STACA0001_1946 -111 5.2 AATGAGAATGGTTATCTCT
Staphylococcus epidermidis ATCC 12228 SE1578 -128 5.2 AATTAGAATAATTATTAAT
Staphylococcus haemolyticus JCSC1435 SH1060 -101 4.9 GATTATAATAATTATTATT
Position: -61
Score: 6.1
Sequence: ATTGAGAATCGTTATCAAT
Locus tag: SERP1777
SERP1777 -61 6.1 ATTGAGAATCGTTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfmC
Ortholog function: iron(III) dicitrate ABC transporter binding protein
Staphylococcus aureus subsp. aureus N315 SA1979 -59 6.3 AATGATAATTGTTATCAAT
Staphylococcus capitis SK14 STACA0001_1300 -60 6.1 AATGAGAATCGTTATCAAT
Staphylococcus epidermidis ATCC 12228 SE1768 -52 6.1 ATTGAGAATCGTTATCAAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1680 -192 6.1 AATGAGAATCGTTATCAAT
Staphylococcus haemolyticus JCSC1435 SH0863 -62 6.6 ATTGATAATCGTTATCAAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0709 -61 6 ACCGATAATCATTATCAAT
Position: -46
Score: 5.8
Sequence: AATGATAATGATAATTATT
Position: -40
Score: 6.6
Sequence: AATGATAATTATTATCAAT
Locus tag: SERP1780
SERP1780 -46 5.8 AATGATAATGATAATTATT
-40 6.6 AATGATAATTATTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA1982
Ortholog function: putative permease of the major facilitator superfamily
Staphylococcus aureus subsp. aureus N315 SA1982 -45 5.9 AATGATAATGATTCTTATT
Staphylococcus capitis SK14 STACA0001_1297 -41 6.6 AATGATAATTATTATCAAT
Staphylococcus epidermidis ATCC 12228 SE1771 -40 6.6 AATGATAATTATTATCAAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1683 -42 6.8 AATGATAATCATTATCAAT
Staphylococcus haemolyticus JCSC1435 SH0860 -54 6.4 AATGATATTCATTATCAAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0706 -38 6.6 AATGATAATTATTATCAAT
Position: -81
Score: 6.6
Sequence: ATTGATAATAATTATCATT
Position: -75
Score: 5.8
Sequence: AATAATTATCATTATCATT
Locus tag: SERP1781
SERP1781 -81 6.6 ATTGATAATAATTATCATT
-75 5.8 AATAATTATCATTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: iucB
Ortholog function: putative aerobactin biosynthesis protein, IucA/IucC family
Staphylococcus aureus subsp. aureus N315 SA1983 -75 5.9 AATAAGAATCATTATCATT
Staphylococcus capitis SK14 STACA0001_1296 -82 6.6 ATTGATAATAATTATCATT
Staphylococcus epidermidis ATCC 12228 SE1772 -81 6.6 ATTGATAATAATTATCATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1684 -83 6.8 ATTGATAATGATTATCATT
Staphylococcus haemolyticus JCSC1435 SH0859 -79 6.4 ATTGATAATGAATATCATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0705 -83 6.6 ATTGATAATAATTATCATT
Position: -36
Score: 6.4
Sequence: AATGATAATGATTATTAAT
Locus tag: SERP2127
SERP2127 -36 6.4 AATGATAATGATTATTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: putative ferrous iron transport protein A
Staphylococcus aureus subsp. aureus N315 SA2338 -41 6.1 AGTGATAATGATTATTATT
Staphylococcus capitis SK14 STACA0001_0945 -42 6.4 ATTGATAATGATTATTAAT
Staphylococcus epidermidis ATCC 12228 SE2115 -36 6.4 AATGATAATGATTATTAAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_2028 -51 6.2 ATTGATAATAATAATCAAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2435 -36 6.4 ATTGATAATGATTATTATT
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