Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NmlR regulog to Shewanella frigidimarina NCIMB 400

Reference regulog properties
Source regulog: NmlR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: activator
Biological process: Carbonyl stress response
Effector: Diamide
Phylum: Proteobacteria/Gamma
Propagated regulon:
Target genome Shewanella frigidimarina NCIMB 400
Orthologous TF(s) Sfri_3872
Regulated genes 1
Built upon 5 sites [see more]
Predicted regulatory interactions in Shewanella frigidimarina NCIMB 400
Locus tag Position Score Sequence
Position: -58
Score: 6.8
Locus tag: Sfri_3873
Supported by regulated orthologs from reference regulons
Ortholog gene name: pcaC
Ortholog function: 4-carboxymuconolactone decarboxylase (EC
Shewanella oneidensis MR-1 SO_0083 -60 6.8 CTTAGAGCTAACTCTAAG
Shewanella sp MR-4 Shewmr4_0089 -57 6.8 CTTAGAGTGAACTCTAAG
Shewanella baltica OS155 Sbal_4266 -58 7.1 CTTAGAGTTAACTCTAAG
Shewanella frigidimarina NCIMB 400 Sfri_3873 -58 6.8 CTTAGAGTTAACTCTAAC
Shewanella woodyi ATCC 51908 Swoo_4049 -57 7.1 CTTAGAGTTAACTCTAAG