Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of BglR regulog to Shewanella frigidimarina NCIMB 400

Reference regulog properties
Source regulog: BglR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Beta-glucosides utilization
Effector: Beta-glucoside
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella frigidimarina NCIMB 400
Orthologous TF(s) Sfri_1314
Regulated genes 3
Built upon 24 sites [see more]
Predicted regulatory interactions in Shewanella frigidimarina NCIMB 400
Locus tag Position Score Sequence
Position: -304
Score: 6.3
Sequence: AAAGAAAGCGCTTACATT
Position: -143
Score: 6.8
Sequence: TATGTAAGCGCTTACATT
Locus tag: Sfri_1313
Sfri_1313 -304 6.3 AAAGAAAGCGCTTACATT
-143 6.8 TATGTAAGCGCTTACATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp(Bgl)
Ortholog function: Predicted beta-glucoside specific TonB-dependent outer membrane receptor
Shewanella frigidimarina NCIMB 400 Sfri_1313 -304 6.3 AAAGAAAGCGCTTACATT
-143 6.8 TATGTAAGCGCTTACATT
Shewanella piezotolerans WP3 swp_1631 -108 5.5 TGTGTAAGCGCTTACAAA
-63 6.3 TTTGTAAGCGCTTACATT
Shewanella woodyi ATCC 51908 Swoo_1144 -109 6.5 AATGTAAGCGCTTACAAT
Position: -176
Score: 6.9
Sequence: AATGTAAGCGCTTTCATT
Locus tag: Sfri_1316
Sfri_1316 -176 6.9 AATGTAAGCGCTTTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bglA1
Ortholog function: Cytoplasmic beta-glucosidase (EC 3.2.1.21)
Shewanella baltica OS155 Sbal_1131 -147 6.9 AATGTAAGCGCTTTCATT
Shewanella denitrificans OS217 Sden_2607 -177 6.9 AATGTAAGCGCTTTCATT
Shewanella frigidimarina NCIMB 400 Sfri_1316 -176 6.9 AATGTAAGCGCTTTCATT
Shewanella amazonensis SB2B Sama_1402 -134 6.9 AATGTAAGCGCTTTCATT
Shewanella piezotolerans WP3 swp_1634 -294 6.9 AATGTAAGCGCTTTCATT
-233 6.9 AATGTAAGCGCTTTCATT
Shewanella woodyi ATCC 51908 Swoo_1147 -199 6.4 GATGTAAGCGCTTTCATT
Position: -224
Score: 6.9
Sequence: AATGAAAGCGCTTACATT
Locus tag: Sfri_1317
Sfri_1317 -224 6.9 AATGAAAGCGCTTACATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glcP
Ortholog function: Predicted glucose transporter in beta-glucoside utilization gene cluster
Shewanella baltica OS155 Sbal_1132 -138 6.9 AATGAAAGCGCTTACATT
Shewanella denitrificans OS217 Sden_2606 -195 6.9 AATGAAAGCGCTTACATT
Shewanella frigidimarina NCIMB 400 Sfri_1317 -224 6.9 AATGAAAGCGCTTACATT
Shewanella woodyi ATCC 51908 Swoo_1148 -127 6.4 AATGAAAGCGCTTACATC
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