Propagation of IscR regulog to Pseudoalteromonas haloplanktis TAC125
| Source regulog: | IscR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | Rrf2 |
| Regulation mode: | repressor |
| Biological process: | Iron-sulfur cluster biogenesis |
| Effector: | Iron-sulfur cluster redox state |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Pseudoalteromonas haloplanktis TAC125 |
| Orthologous TF(s) | PSHAa2672 |
| Regulated genes | 2 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -62
Score: 6 Sequence: ATACTTGATTAAAACACTCGGGTAT
Locus tag: PSHAa2251
|
||||
| PSHAa2251 | -62 | 6 | ATACTTGATTAAAACACTCGGGTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: erpA | ||||
| Ortholog function: ErpA, essential respiratory protein A / probable iron binding protein from the HesB_IscA_SufA family | ||||
| Shewanella oneidensis MR-1 | SO_1304 | -88 | 5.8 | ATACTTGAACAAAATAGTCAGGTAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1123 | -64 | 5.8 | ATACTTGAACAAAATAGTCAGGTAA |
| Shewanella sp W3-18-1 | Sputw3181_3041 | -64 | 5.8 | ATACTTGAACAAAATAGTCAGGTAA |
| Shewanella sp ANA-3 | Shewana3_3067 | -64 | 5.8 | ATACTTGAACAAAATAGTCAGGTAA |
| Shewanella sp MR-4 | Shewmr4_2889 | -64 | 5.8 | ATACTTGAACAAAATAGTCAGGTAA |
| Shewanella sp MR-7 | Shewmr7_2971 | -64 | 5.8 | ATACTTGAACAAAATAGTCAGGTAA |
| Shewanella baltica OS155 | Sbal_1163 | -64 | 5.7 | ATACTTGAACAAAACAGTCAGGTAA |
| Shewanella denitrificans OS217 | Sden_2815 | -62 | 5.8 | ATACTTGAACAAAATAGTCAGGTAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2976 | -63 | 5.8 | ATACTTGAACAAAATAGTCAGGTAA |
| Shewanella amazonensis SB2B | Sama_0843 | -64 | 5.8 | ATACTTGAACAAAATAGTCAGGTAA |
| Shewanella loihica PV-4 | Shew_1017 | -64 | 5.8 | TTACTTGAACAAAATAGTCAGGTAT |
| Shewanella pealeana ATCC 700345 | Spea_0985 | -64 | 5.7 | TTACTTGAACAAAACACTCAGGTAT |
| Shewanella halifaxensis HAW-EB4 | Shal_1036 | -64 | 5.7 | TTACTTGAACAAAACACTCAGGTAT |
| Shewanella piezotolerans WP3 | swp_3849 | -64 | 5.4 | TTACTTGAACAAAACGGTCAGGTAT |
| Shewanella sediminis HAW-EB3 | Ssed_1095 | -64 | 5.5 | TTACTTGAACAAAATGGTCAGGTAT |
| Shewanella woodyi ATCC 51908 | Swoo_1203 | -64 | 5.8 | ATACTTGAACAAAATGGTCAGGTAT |
|
Position: -157
Score: 6.3 Sequence: ATACTTGACTAAATTACTCAGGTAA
Position: -117
Score: 6.3 Sequence: ATACTTGAGTAAAACACTCAGGTAT
Locus tag: PSHAa2672
|
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| PSHAa2672 | -157 | 6.3 | ATACTTGACTAAATTACTCAGGTAA | |
| -117 | 6.3 | ATACTTGAGTAAAACACTCAGGTAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: iscR | ||||
| Ortholog function: Iron-sulfur cluster regulator IscR | ||||
| Shewanella oneidensis MR-1 | SO_2263 | -90 | 5.5 | ATACTTGAGTGATTTACTAGGTTTT |
| -65 | 6.4 | ATACTTGACTGATTTACTCGGGTAT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_2150 | -91 | 4.3 | TTACCTGAGTGTTTTAGTAGGACTT |
| -66 | 6.4 | ATACTTGACTAATTTACTCGGGTAT | ||
| Shewanella sp W3-18-1 | Sputw3181_1861 | -91 | 4.3 | TTACCTGAGTGTTTTAGTAGGACTT |
| -66 | 6.4 | ATACTTGACTAATTTACTCGGGTAT | ||
| Shewanella sp ANA-3 | Shewana3_2281 | -90 | 5.4 | ATACCTGAGTGTTTTACTAGGTTTT |
| -65 | 6.3 | ATACTTGACTGAAATACTCGGGTAT | ||
| Shewanella sp MR-4 | Shewmr4_1738 | -90 | 5.6 | ATACTTGAGTATTTTACTAGGGTTT |
| -65 | 6.4 | ATACTTGACTGAATTACTCGGGTAT | ||
| Shewanella sp MR-7 | Shewmr7_1818 | -90 | 5.4 | ATACTTGAGTGTTTTACTAGGTTTT |
| -65 | 6.4 | ATACTTGACTGAAATACTCAGGTAT | ||
| Shewanella baltica OS155 | Sbal_2398 | -90 | 5.4 | ATACTTGAGTGTTTTAGTAGGTTTT |
| -64 | 6.4 | ATACTTGACTGATTTACTCGGGTAT | ||
| Shewanella denitrificans OS217 | Sden_1457 | -88 | 5.1 | ATACTTGAGTAAAACACTAGGTTTA |
| -63 | 6.4 | ATACTTGACTAAATTACTCGGGTAT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2425 | -89 | 4.5 | ATACCCGAGTGTTTTGGTAGGATTA |
| -64 | 6.2 | ATACTTGACTAAATTACTAGGGTAT | ||
| Shewanella amazonensis SB2B | Sama_1292 | -91 | 5.6 | ATACTTGAGTAAATTAGTTGGTTTT |
| -66 | 6.5 | ATAGTTGACTAAATTACTCAGGTAT | ||
| Shewanella loihica PV-4 | Shew_2318 | -90 | 5.1 | ATACCTGACTAATCTGCTAGGTTTT |
| -65 | 6.4 | ATACTTGACTAAAACAGTCAAGTAT | ||
| Shewanella pealeana ATCC 700345 | Spea_1487 | -90 | 5 | ATACTTGACCGAATTGCTAGGCTTT |
| -65 | 6.4 | ATACTTGACTAAAATAGTCGGGTAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1571 | -90 | 4.5 | ATACCTGACCAAATAGCTAGGCTTA |
| -65 | 6 | ATACTTGACTGAAACGGTCGGGTAT | ||
| Shewanella piezotolerans WP3 | swp_1693 | -90 | 5.2 | ATACTTGACCAAACCACTAGGTTAA |
| -65 | 6.5 | ATACTTGACTAAATTACTCAGGTAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_2872 | -161 | 4.5 | ATACCCCACCAAAGTGGCAGGGTAT |
| -63 | 6.4 | ATACTTGACTAAAATAGTCGGGTAT | ||
| Shewanella woodyi ATCC 51908 | Swoo_1775 | -215 | 4.1 | TTTCGTGAGTATTATGGTAAAGATT |
| -90 | 5.1 | ATACTTGACTAAACTACTAGGTTTA | ||
| -65 | 6.4 | ATACTTGACTAAAACACTCAGGTAT | ||