Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of FadR regulog to Pseudoalteromonas haloplanktis TAC125

Reference regulog properties
Source regulog: FadR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor (activator)
Biological process: Fatty acid degradation
Effector: Palmitoyl-CoA; Oleoyl-CoA
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pseudoalteromonas haloplanktis TAC125
Orthologous TF(s) PSHAa0838
Regulated genes 1
Built upon 101 sites [see more]
Predicted regulatory interactions in Pseudoalteromonas haloplanktis TAC125
Locus tag Position Score Sequence
Position: -33
Score: 5.1
Sequence: AACAGGTCAGACCTGTC
Locus tag: PSHAa0966
PSHAa0966 -33 5.1 AACAGGTCAGACCTGTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadI
Ortholog function: FadI component of anaerobic fatty acid oxidation complex
Shewanella oneidensis MR-1 SO_3089 -109 5.2 TAATGGTCAGACCTGTT
Shewanella putrefaciens CN-32 Sputcn32_2460 -114 5.2 TAATGGTCAGACCTGTT
Shewanella sp W3-18-1 Sputw3181_1548 -114 5.2 TAATGGTCAGACCTGTT
Shewanella sp ANA-3 Shewana3_1460 -113 5.2 TAATGGTCAGACCTGTT
Shewanella sp MR-4 Shewmr4_1407 -113 5.2 TAATGGTCAGACCTGTT
Shewanella sp MR-7 Shewmr7_1472 -113 5.2 TAATGGTCAGACCTGTT
Shewanella baltica OS155 Sbal_2761 -114 5.2 TAATGGTCAGACCTGTT
Shewanella denitrificans OS217 Sden_1529 -88 4.7 TGATGGTCAGACCAGAA
Shewanella frigidimarina NCIMB 400 Sfri_2677 -82 4.9 TGATGGTCTGACCAGAT
Shewanella amazonensis SB2B Sama_2168 -89 5.2 TAATGGTCAGACCTGTT
Shewanella loihica PV-4 Shew_2426 -112 4.9 TGATGGTCTGACCTGTT
Shewanella pealeana ATCC 700345 Spea_2599 -94 4.9 TAATGGTCAGACCTGTC
Shewanella halifaxensis HAW-EB4 Shal_2671 -97 5.2 TAATGGTCAGACCTGTT
Shewanella piezotolerans WP3 swp_3140 -100 5.2 TAATGGTCAGACCTGTT
Shewanella sediminis HAW-EB3 Ssed_1628 -129 4.9 TGATGGTCAGACCTGTT
Shewanella woodyi ATCC 51908 Swoo_3027 -116 5.2 TAATGGTCAGACCTGTT