Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of ArgR regulog to Pseudoalteromonas haloplanktis TAC125

Reference regulog properties
Source regulog: ArgR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pseudoalteromonas haloplanktis TAC125
Orthologous TF(s) PSHAa2659
Regulated genes 13
Built upon 502 sites [see more]
Predicted regulatory interactions in Pseudoalteromonas haloplanktis TAC125
Locus tag Position Score Sequence
Position: 3
Score: 3.9
Sequence: GCTAAATTAAAATTAACA
Locus tag: PSHAa0539
PSHAa0539 3 3.9 GCTAAATTAAAATTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: oadA
Ortholog function: Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
Shewanella putrefaciens CN-32 Sputcn32_1030 -265 4.3 TATCCTTATAAATTCACT
-154 4.3 TGTGAATATTTAGTCTTT
-133 4 TGTGATTTTATATGCTGC
Shewanella sp W3-18-1 Sputw3181_3135 -265 4.3 TATCCTTATAAATTCACT
-154 4.3 TGTGAATATTTAGTCTTT
-133 4 TGTGATTTTATATGCTGC
Shewanella sp MR-7 Shewmr7_3068 -322 3.9 ATTCAATTTAAAGGCCAT
-176 3.7 AACGAATGTTCATTTAAT
Shewanella baltica OS155 Sbal_1025 -139 4.9 TGTGATTTTTTATTCAAA
Shewanella frigidimarina NCIMB 400 Sfri_1066 -182 3.8 GTTGAATAATCGTTGAGT
-165 4.6 TTTGAATATTTATGCTTT
Shewanella amazonensis SB2B Sama_1052 -352 4.1 ACTGCATATACTTCCACT
-307 3.6 TCTGCCCATGAATGCAGT
Shewanella loihica PV-4 Shew_1220 -377 4.3 ATTGCATAATCTTGCATA
-331 4 ATTCAATTTTCAAGCAGA
Shewanella pealeana ATCC 700345 Spea_1199 -73 4.2 TGTGAATGAATAGTGAAT
-62 4.1 AGTGAATATTTATTTTTA
Shewanella halifaxensis HAW-EB4 Shal_1236 -63 4.8 GGTGAATATTTATTGAGT
-43 4.1 CATCCATGTTTATTCACA
Shewanella piezotolerans WP3 swp_1379 -157 3.6 TATCAACAGAAATGCATA
-136 4.4 TGTGAATAAATAGTGATT
Shewanella sediminis HAW-EB3 Ssed_1321 -322 4.4 ACTGCATAACTTTTCATT
Shewanella woodyi ATCC 51908 Swoo_3336 -110 4.4 AATGAATAAAAAGTTATT
Position: -23
Score: 4
Sequence: AATCAATAATAATGGAAC
Locus tag: PSHAa1273
PSHAa1273 -23 4 AATCAATAATAATGGAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2753
Ortholog function: Prolyl endopeptidase (EC 3.4.21.26)
Shewanella oneidensis MR-1 SO_2753 -445 4.1 AATGCATTTGCAATCAAC
-173 5 AATGCATAAAAATACACT
Shewanella putrefaciens CN-32 Sputcn32_1602 -444 4.1 AATGCATTTGCAATCAAC
-193 3.6 AATAACTTATCAATCAGT
-172 5 AGTGCATAAAAATACATT
Shewanella sp W3-18-1 Sputw3181_2420 -444 4.1 AATGCATTTGCAATCAAC
-193 3.6 AATAACTTATCAATCAGT
-172 5 AGTGCATAAAAATACATT
Shewanella sp ANA-3 Shewana3_2536 -444 4.1 AATGCATTTGCAATCAAC
-172 5 AATGCATAAAAATACACT
Shewanella sp MR-4 Shewmr4_2373 -445 4.1 AATGCATTTGCAATCAAC
-182 4.2 AGTCAAAATTAATGCATA
-172 5 AATGCATAAAAATACACT
Shewanella sp MR-7 Shewmr7_2445 -445 4.1 AATGCATTTGCAATCAAC
-172 5 AATGCATAAAAATACACT
Shewanella baltica OS155 Sbal_1741 -444 4.1 AATGCATTTGCAATCAAC
-192 3.9 AATAACTTATAAATCACT
-171 4.9 AGTGCATAATAATACACT
Shewanella pealeana ATCC 700345 Spea_2569 -297 4.2 ATTGAATAAAGATGAACT
-215 3.9 CATGATATTTAATTCATC
Shewanella halifaxensis HAW-EB4 Shal_1686 -230 3.9 CATGATATTTAATTCATC
Position: -206
Score: 4.2
Sequence: AATCAATTTAATTGCATA
Position: -196
Score: 3.8
Sequence: ATTGCATAACAATATAAA
Position: -169
Score: 5.1
Sequence: GATGAATATCAATTCACT
Position: -158
Score: 3.8
Sequence: ATTCACTTTTTAAGCATA
Locus tag: PSHAa2291
PSHAa2291 -206 4.2 AATCAATTTAATTGCATA
-196 3.8 ATTGCATAACAATATAAA
-169 5.1 GATGAATATCAATTCACT
-158 3.8 ATTCACTTTTTAAGCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Shewanella oneidensis MR-1 SO_0275 -327 3.6 ATTGAAATATTAAGTAGT
-249 4 TAAAAATATATATTCACA
-127 3.7 AGTGAATAAAATAACAAG
Shewanella putrefaciens CN-32 Sputcn32_3717 -192 4.2 TATGAAAATAAATTAAAA
-57 3.8 AGTGAATAAAATAACAAC
Shewanella sp W3-18-1 Sputw3181_3860 -193 4.2 TATGAAAATAAATTAAAA
-180 4 TAAAAATATATATTCACA
-57 4 AGTGAATAAAATAACAAT
Shewanella sp ANA-3 Shewana3_3905 -357 3.7 ACTGATTTTTCAGTCTTT
-327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella sp MR-4 Shewmr4_3709 -327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella sp MR-7 Shewmr7_0236 -327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella baltica OS155 Sbal_4124 -471 4.2 ATTCAATATAAATGCGAA
-252 4 TAAAAATATATATTCACA
-130 3.8 AGTGAATAAAATAACAAC
Shewanella denitrificans OS217 Sden_0250 -235 4.3 AATAAATATGTATTCACA
-214 3.7 ATTGCATAACAATTTGAT
-145 4.3 ATCGAATATAAAAGCACA
Shewanella amazonensis SB2B Sama_0256 -241 3.7 AATAGATATTCATGCATA
Shewanella loihica PV-4 Shew_0202 -249 3.7 TAAAAATATCTATTCAAT
-228 3.5 ATTGCATAATTAGTTTGT
Shewanella pealeana ATCC 700345 Spea_0227 -266 3.8 CCCAAATATATATTCAAA
Shewanella halifaxensis HAW-EB4 Shal_4093 -267 4.5 CCTAAATATATATTCAAA
Shewanella piezotolerans WP3 swp_2055 -266 4.5 CCTAAATATATATTCAAA
Shewanella sediminis HAW-EB3 Ssed_4276 -256 4 GTAAAATATATATTCAAA
-235 3.5 ATTGCATAATTAGTTTGT
Shewanella woodyi ATCC 51908 Swoo_0329 -423 3.5 TTTGCATTCAAAACCAAG
-263 4 GTAAAATATATATTCAAA
Position: -84
Score: 3.8
Sequence: TATGCTTAAAAAGTGAAT
Position: -73
Score: 5.1
Sequence: AGTGAATTGATATTCATC
Position: -46
Score: 3.8
Sequence: TTTATATTGTTATGCAAT
Position: -36
Score: 4.2
Sequence: TATGCAATTAAATTGATT
Locus tag: PSHAa2292
PSHAa2292 -84 3.8 TATGCTTAAAAAGTGAAT
-73 5.1 AGTGAATTGATATTCATC
-46 3.8 TTTATATTGTTATGCAAT
-36 4.2 TATGCAATTAAATTGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argE
Ortholog function: Acetylornithine deacetylase (EC 3.5.1.16)
Shewanella amazonensis SB2B Sama_0255 -50 3.7 ACTCTTTAATTATGCAAT
Shewanella loihica PV-4 Shew_0201 -53 4.2 TATGCAATAATATTGAAT
Shewanella pealeana ATCC 700345 Spea_0226 -27 3.8 TTTGAATATATATTTGGG
Shewanella halifaxensis HAW-EB4 Shal_4094 -122 3.8 ATTGAACATATATACTCT
-26 4.5 TTTGAATATATATTTAGG
Shewanella piezotolerans WP3 swp_2054 -143 3.4 AATACTTAATAATTGAAC
-27 4.5 TTTGAATATATATTTAGG
Shewanella sediminis HAW-EB3 Ssed_4277 -48 3.5 ACAAACTAATTATGCAAT
-27 4 TTTGAATATATATTTTAC
Shewanella woodyi ATCC 51908 Swoo_0328 -28 4 TTTGAATATATATTTTAC
Position: -281
Score: 3.9
Sequence: ATTCATAAAATATTCAAT
Locus tag: PSHAb0177
PSHAb0177 -281 3.9 ATTCATAAAATATTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: astB
Ortholog function: Succinylarginine dihydrolase (EC 3.5.3.23)
Shewanella oneidensis MR-1 SO_2706 -227 4 AGTCACTTTTTAATCAAA
-142 3.6 AAGAAATAGTTATGCATT
-40 4.1 TTTGAATAAATAATAACC
Shewanella putrefaciens CN-32 Sputcn32_2251 -225 4 AGTCACTTTTTAATCAAA
-131 4.2 TATGCATTTATCGTCAAA
Shewanella sp W3-18-1 Sputw3181_1757 -225 4 AGTCACTTTTTAATCAAA
-131 4.2 TATGCATTTATCGTCAAA
Shewanella sp ANA-3 Shewana3_1728 -227 4 AGTCACTTTTTAATCAAA
-132 3.6 TATGCATTTATCGTGAAA
-40 4.1 TTTGAATAAATAATAACC
Shewanella sp MR-4 Shewmr4_1584 -227 4 AGTCACTTTTTAATCAAA
-142 3.6 AAGAAATAGTTATGCATT
Shewanella sp MR-7 Shewmr7_1659 -227 4 AGTCACTTTTTAATCAAA
-142 3.6 AAGAAATAGTTATGCATT
Shewanella baltica OS155 Sbal_2497 -226 4 AGTCACTTTTTAATCAAA
-132 3.6 TATGCATTTATCGTGAAA
-40 3.6 TATGAACAAATAATAACT
Shewanella denitrificans OS217 Sden_2329 -201 4.7 CTTGCATTTTTAATCACT
Shewanella frigidimarina NCIMB 400 Sfri_2479 -186 5 AGTGCATTTTTAGTCATT
Shewanella amazonensis SB2B Sama_1321 -233 4.1 AGTCACTTTTTAATCAAT
-147 3.6 AAGCAATAGTTATGCAAA
Shewanella pealeana ATCC 700345 Spea_1534 -137 5 TGTGCATTTCAATTCAAA
Shewanella halifaxensis HAW-EB4 Shal_1604 -169 4.1 ATTTCATTAATAGTCATC
-137 4.6 TGTGCATTTTGATGCAAA
Shewanella piezotolerans WP3 swp_1743 -167 4 ATTTCATTATTAGTCATC
-135 4.6 TGTGCATTTTGATGCAAA
Shewanella sediminis HAW-EB3 Ssed_2842 -354 4 ATTTCATTATTAGTCATC
-322 4.3 TGTGCATTTCGATGCAAA
Shewanella woodyi ATCC 51908 Swoo_1802 -236 4 ATTTCATTATTAGTCATC
-204 5 TGTGAATTTCAATGCAAA
Position: -11
Score: 4.1
Sequence: AAGGATTTAAAATGCATA
Locus tag: PSHAb0425
PSHAb0425 -11 4.1 AAGGATTTAAAATGCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0620
Ortholog function: Conserved hypothetical protein
Shewanella oneidensis MR-1 SO_0620 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella putrefaciens CN-32 Sputcn32_0648 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAC
Shewanella sp W3-18-1 Sputw3181_3526 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAC
Shewanella sp ANA-3 Shewana3_0613 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella sp MR-4 Shewmr4_0614 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella sp MR-7 Shewmr7_3416 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella baltica OS155 Sbal_0574 -247 3.9 TATGACTAATTATGCTGA
Shewanella frigidimarina NCIMB 400 Sfri_3296 -301 4.4 TATGTGTAATTATTCACT
-241 3.9 TATGACTATTTATGCTTC
-189 4 TATCAATCTTTATGCAGA
Shewanella amazonensis SB2B Sama_3008 -308 3.8 TATGTCTATTTATCCAAT
-247 4.2 TCTGACTAAATATGCCAT
Shewanella loihica PV-4 Shew_0581 -304 5 TGTGACTATATATTCATA
-244 4 TCTGACTATTTATGCTCA
Shewanella pealeana ATCC 700345 Spea_3513 -281 3.7 CGTGAATAACTAGTAATT
-242 4 TGTGACTATTTATGCTTA
Shewanella halifaxensis HAW-EB4 Shal_3607 -242 4 TATGACTATTTATGCTTA
Shewanella piezotolerans WP3 swp_0750 -244 4 TATGACTAAATATGCTTA
Shewanella sediminis HAW-EB3 Ssed_0812 -246 3.9 TATGACTAATTATGCTTA
Shewanella woodyi ATCC 51908 Swoo_0658 -245 4.2 TATGACTAAATATGCTCT
© 2009-2020 RegPrecise