Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Shewanella denitrificans OS217

Reference regulog properties
Source regulog: Fnr - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode:
Biological process: Anaerobic metabolism
Effector: Oxygen
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella denitrificans OS217
Orthologous TF(s) Sden_1843
Regulated genes 12
Built upon 541 sites [see more]
Predicted regulatory interactions in Shewanella denitrificans OS217
Locus tag Position Score Sequence
Position: -87
Score: 4.5
Sequence: TTGATGCAGGTCAA
Locus tag: Sden_0539
Sden_0539 -87 4.5 TTGATGCAGGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0579
Ortholog function: Predicted serine/threonine protein kinase
Shewanella amazonensis SB2B Sama_0541 -118 4.9 TTGATTTGCATCAA
Shewanella baltica OS155 Sbal_0539 -154 4.5 TTGATGTAAGTCAA
Shewanella denitrificans OS217 Sden_0539 -87 4.5 TTGATGCAGGTCAA
Shewanella frigidimarina NCIMB 400 Sfri_3500 -226 4.6 TTGATATAGGTCAA
Shewanella halifaxensis HAW-EB4 Shal_0673 -123 4.8 TTGATGTGTATCAA
Shewanella loihica PV-4 Shew_3263 -124 4.6 TTGATATAGGTCAA
Shewanella oneidensis MR-1 SO0579 -145 4.9 TTGATATAAATCAA
Shewanella pealeana ATCC 700345 Spea_0586 -123 4.8 TTGATATGCATCAA
Shewanella piezotolerans WP3 swp_4517 -140 4.9 TTGATATACATCAA
Shewanella putrefaciens CN-32 Sputcn32_3298 -152 4.3 TTGATATAAGTCAA
Shewanella sediminis HAW-EB3 Ssed_4012 -185 4.6 TTGATATAGGTCAA
Shewanella sp ANA-3 Shewana3_0578 -152 4.9 TTGATATAAATCAA
Shewanella sp MR-4 Shewmr4_0579 -154 4.9 TTGATATAAATCAA
Shewanella sp MR-7 Shewmr7_3451 -154 4.9 TTGATATAAATCAA
Shewanella sp W3-18-1 Sputw3181_0643 -152 4.3 TTGATATAAGTCAA
Shewanella woodyi ATCC 51908 Swoo_4155 -226 4.8 TTGATGTAGGTCAA
Position: -222
Score: 4.4
Sequence: CTGAGCTAAATCAA
Locus tag: Sden_0860
Sden_0860 -222 4.4 CTGAGCTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydD
Ortholog function: Transport ATP-binding protein CydD
Shewanella amazonensis SB2B Sama_2679 -133 4.7 TTGATCCAGCGCAA
Shewanella denitrificans OS217 Sden_0860 -222 4.4 CTGAGCTAAATCAA
Shewanella halifaxensis HAW-EB4 Shal_3589 -229 5.3 TTGATCTAGCTCAA
Shewanella loihica PV-4 Shew_0613 -125 5.3 TTGATCTAGCTCAA
Shewanella pealeana ATCC 700345 Spea_3494 -181 5.3 TTGATCTAGCTCAA
Shewanella sediminis HAW-EB3 Ssed_3849 -135 5.3 TTGATCTAGCTCAA
Shewanella woodyi ATCC 51908 Swoo_0710 -145 5.3 TTGATCTAGCTCAA
Position: -36
Score: 4.6
Sequence: TTGATTTGGATCAC
Locus tag: Sden_0990
Sden_0990 -36 4.6 TTGATTTGGATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfr2
Ortholog function: Bacterioferritin
Shewanella amazonensis SB2B Sama_2530 -41 5.4 TTGATGTAGATCAA
Shewanella baltica OS155 Sbal_0932 -44 5.3 TTGATTTAGATCAA
Shewanella denitrificans OS217 Sden_0990 -36 4.6 TTGATTTGGATCAC
Shewanella frigidimarina NCIMB 400 Sfri_0957 -37 4.5 TTGATCGAGATCAC
Shewanella halifaxensis HAW-EB4 Shal_3179 -33 5.2 TTGATATAGATCAA
Shewanella loihica PV-4 Shew_2873 -33 5.3 TTGATTTAGATCAA
Shewanella oneidensis MR-1 SO1111 -43 5.3 TTGATTTAGATCAA
Shewanella pealeana ATCC 700345 Spea_3095 -33 5.2 TTGATATAGATCAA
Shewanella piezotolerans WP3 swp_1175 -35 5.2 TTGATATAGATCAA
Shewanella putrefaciens CN-32 Sputcn32_0948 -44 5.3 TTGATTTAGATCAA
Shewanella sediminis HAW-EB3 Ssed_2230 -31 5.2 TTGATATAGATCAA
Shewanella sp ANA-3 Shewana3_0946 -43 5.3 TTGATTTAGATCAA
Shewanella sp MR-4 Shewmr4_0944 -42 5.3 TTGATTTAGATCAA
Shewanella sp MR-7 Shewmr7_0982 -43 5.3 TTGATTTAGATCAA
Shewanella sp W3-18-1 Sputw3181_3228 -44 5.3 TTGATTTAGATCAA
Shewanella woodyi ATCC 51908 Swoo_3608 -85 5.4 TTGATGTAGATCAA
Position: -153
Score: 5.3
Sequence: TTGATCTAAATCAA
Locus tag: Sden_1274
Sden_1274 -153 5.3 TTGATCTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydA
Ortholog function: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Shewanella amazonensis SB2B Sama_2349 -334 4.3 TTGATTTACGTCAA
Shewanella baltica OS155 Sbal_2979 -342 4.9 TTGATTTGCATCAA
Shewanella denitrificans OS217 Sden_1274 -153 5.3 TTGATCTAAATCAA
Shewanella frigidimarina NCIMB 400 Sfri_1142 -338 4.2 ATGATTGTGATCAA
Shewanella halifaxensis HAW-EB4 Shal_1381 -336 4.9 TTGATTTGAATCAA
-51 4.4 TTGATGGGGATCTA
Shewanella loihica PV-4 Shew_1302 -341 4.9 TTGATTTGAATCAA
-51 4.4 TTGATGGGGATCTA
Shewanella oneidensis MR-1 SO3286 -338 4.9 TTGATTTGAATCAA
Shewanella pealeana ATCC 700345 Spea_1318 -337 4.9 TTGATTTGAATCAA
-51 4.4 TTGATGGGGATCTA
Shewanella piezotolerans WP3 swp_1469 -332 4.9 TTGATTTGAATCAA
-51 4.4 TTGATGGGGATCTA
Shewanella putrefaciens CN-32 Sputcn32_2641 -339 4.9 TTGATTTGAATCAA
Shewanella sediminis HAW-EB3 Ssed_3118 -336 4.9 TTGATTTGAATCAA
Shewanella sp ANA-3 Shewana3_1241 -338 4.9 TTGATTTGAATCAA
Shewanella sp MR-4 Shewmr4_1239 -338 4.9 TTGATTTGAATCAA
Shewanella sp MR-7 Shewmr7_1310 -338 4.9 TTGATTTGAATCAA
Shewanella sp W3-18-1 Sputw3181_1366 -339 4.9 TTGATTTGAATCAA
Shewanella woodyi ATCC 51908 Swoo_1565 -334 4.9 TTGATTTGAATCAA
-51 4.2 ATGATGGGGATCTA
Position: -166
Score: 5.5
Sequence: ATGATCTAGATCAA
Locus tag: Sden_1419
Sden_1419 -166 5.5 ATGATCTAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Shewanella amazonensis SB2B Sama_1275 -114 4.6 ATGATCCATATCAA
Shewanella baltica OS155 Sbal_1665 -122 5.2 ATGATCTGGATCAT
Shewanella denitrificans OS217 Sden_1419 -166 5.5 ATGATCTAGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_2443 -106 5.4 ATGATCTGGATCAA
Shewanella halifaxensis HAW-EB4 Shal_2692 -123 5.4 ATGATCTGGATCAA
Shewanella loihica PV-4 Shew_2449 -122 5.4 ATGATCTGGATCAA
Shewanella oneidensis MR-1 SO2834 -269 4 TTGATTTTAAGCAT
-121 5.2 ATGATCTGGATCAT
Shewanella pealeana ATCC 700345 Spea_2619 -123 5.4 ATGATCTGGATCAA
Shewanella piezotolerans WP3 swp_3165 -122 5.4 ATGATCTGGATCAA
-62 3.8 TTGATTTAAAGTAA
Shewanella putrefaciens CN-32 Sputcn32_1540 -203 3.9 ATGACTTAGGTCAA
-121 5.2 ATGATCTGGATCAT
Shewanella sediminis HAW-EB3 Ssed_1600 -122 5 ATGATCGAGATCAA
Shewanella sp ANA-3 Shewana3_2603 -121 5.2 ATGATCTGGATCAT
Shewanella sp MR-4 Shewmr4_2441 -121 5.2 ATGATCTGGATCAT
Shewanella sp MR-7 Shewmr7_2511 -121 5.2 ATGATCTGGATCAT
Shewanella sp W3-18-1 Sputw3181_2559 -203 3.9 ATGACTTAGGTCAA
-121 5.2 ATGATCTGGATCAT
Shewanella woodyi ATCC 51908 Swoo_3049 -122 4.8 ATGATCAGGATCAA
Position: -69
Score: 5.1
Sequence: CTGATCTAGATCAA
Locus tag: Sden_1495
Sden_1495 -69 5.1 CTGATCTAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napE2
Ortholog function: Periplasmic nitrate reductase component NapE
Shewanella amazonensis SB2B Sama_1620 -133 5.4 ATGATCTGGATCAA
Shewanella baltica OS155 Sbal_1908 -171 5.4 ATGATCTGGATCAA
Shewanella denitrificans OS217 Sden_1495 -69 5.1 CTGATCTAGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_2555 -146 5.3 ATGATCTAGATCAT
Shewanella loihica PV-4 Shew_1768 -181 5.1 ATGATCCAGATCAA
Shewanella pealeana ATCC 700345 Spea_2429 -191 5.4 ATGATCTGGATCAA
Shewanella putrefaciens CN-32 Sputcn32_1901 -172 5.4 ATGATCTGGATCAA
Shewanella sp ANA-3 Shewana3_1898 -164 5.4 ATGATCTGGATCAA
Shewanella sp MR-4 Shewmr4_1840 -164 5.4 ATGATCTGGATCAA
Shewanella sp MR-7 Shewmr7_2137 -164 5.4 ATGATCTGGATCAA
Shewanella sp W3-18-1 Sputw3181_2107 -172 5.4 ATGATCTGGATCAA
Position: -133
Score: 4.5
Sequence: GTGATGTGCATCAT
Locus tag: Sden_1640
Sden_1640 -133 4.5 GTGATGTGCATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhD
Ortholog function: Glutaredoxin-related protein
Shewanella amazonensis SB2B Sama_1919 -169 4.5 GTGATGTGAATCAT
Shewanella baltica OS155 Sbal_1783 -152 4.5 GTGATGTGAATCAT
Shewanella denitrificans OS217 Sden_1640 -133 4.5 GTGATGTGCATCAT
Shewanella frigidimarina NCIMB 400 Sfri_1748 -151 4.5 GTGATGTGAATCAT
Shewanella halifaxensis HAW-EB4 Shal_2335 -150 3.9 GTGAAGTGTATCAT
Shewanella loihica PV-4 Shew_1835 -160 4.5 GTGATGTGAATCAT
Shewanella oneidensis MR-1 SO2880 -153 4.5 GTGATGTGAATCAT
Shewanella pealeana ATCC 700345 Spea_1964 -150 3.9 GTGAAGTGTATCAT
Shewanella piezotolerans WP3 swp_2753 -149 3.9 GTGAAGTGTATCAT
Shewanella putrefaciens CN-32 Sputcn32_1688 -152 4.5 GTGATGTGAATCAT
Shewanella sp ANA-3 Shewana3_1640 -153 4.5 GTGATGTGAATCAT
Shewanella sp MR-4 Shewmr4_1573 -153 4.5 GTGATGTGAATCAT
Shewanella sp MR-7 Shewmr7_1648 -153 4.5 GTGATGTGAATCAT
Shewanella sp W3-18-1 Sputw3181_2337 -152 4.5 GTGATGTGAATCAT
Position: -69
Score: 4.2
Sequence: TTGATATAGCTCAC
Locus tag: Sden_1842
Sden_1842 -69 4.2 TTGATATAGCTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: uspE
Ortholog function: Universal stress protein E
Shewanella amazonensis SB2B Sama_1800 -74 4.6 TTGATCTAAAACAA
Shewanella baltica OS155 Sbal_2210 -72 4.9 TTGATCTAGAACAA
Shewanella baltica OS155 Sbal_4496 -72 4.9 TTGATCTAGAACAA
Shewanella denitrificans OS217 Sden_1842 -69 4.2 TTGATATAGCTCAC
Shewanella frigidimarina NCIMB 400 Sfri_2019 -87 4.6 ATGATCTATCTCAA
Shewanella halifaxensis HAW-EB4 Shal_2206 -73 4.6 TTGATCTAAAACAA
Shewanella loihica PV-4 Shew_1994 -72 4.6 TTGATCTAAAACAA
Shewanella oneidensis MR-1 SO2355 -72 4.9 TTGATCTAGAACAA
Shewanella pealeana ATCC 700345 Spea_2223 -74 4.6 TTGATCTAAAACAA
Shewanella piezotolerans WP3 swp_2581 -71 4.6 TTGATCTAAAACAA
Shewanella putrefaciens CN-32 Sputcn32_1950 -72 4.9 TTGATCTAGAACAA
Shewanella sediminis HAW-EB3 Ssed_2220 -71 4.6 TTGATCTGAAACAA
Shewanella sp ANA-3 Shewana3_2116 -72 4.9 TTGATCTAGAACAA
Shewanella sp MR-4 Shewmr4_2015 -72 4.9 TTGATCTAGAACAA
Shewanella sp MR-7 Shewmr7_1960 -72 4.9 TTGATCTAGAACAA
Shewanella sp W3-18-1 Sputw3181_2055 -72 4.9 TTGATCTAGAACAA
Shewanella woodyi ATCC 51908 Swoo_2416 -70 4.9 TTGATCTAAAGCAA
Position: -220
Score: 5.3
Sequence: TTGATCCAGATCAA
Locus tag: Sden_1851
Sden_1851 -220 5.3 TTGATCCAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccoN
Ortholog function: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Shewanella amazonensis SB2B Sama_1791 -218 5.3 TTGATCCAGATCAA
Shewanella baltica OS155 Sbal_2201 -212 5.6 TTGATCTAGATCAA
-169 4.5 TTGATATTGCTCAA
Shewanella baltica OS155 Sbal_4487 -212 5.6 TTGATCTAGATCAA
-169 4.5 TTGATATTGCTCAA
Shewanella denitrificans OS217 Sden_1851 -220 5.3 TTGATCCAGATCAA
-178 5.1 TTGATGTAGCTCAA
Shewanella frigidimarina NCIMB 400 Sfri_2010 -224 5.6 TTGATCTAGATCAA
-182 4.3 TTGACTTAGCTCAA
Shewanella halifaxensis HAW-EB4 Shal_2197 -217 5.6 TTGATCTAGATCAA
-174 4.9 TTGATATAGCTCAA
Shewanella loihica PV-4 Shew_1985 -217 5.6 TTGATCTGGATCAA
-174 4.5 TTGATATTGCTCAA
Shewanella oneidensis MR-1 SO2364 -212 5.6 TTGATCTAGATCAA
-169 4.2 TTGACATGGCTCAA
-106 4.3 TTGACATAGCTCAA
Shewanella pealeana ATCC 700345 Spea_2214 -215 5.6 TTGATCTAGATCAA
-172 4.9 TTGATATAGCTCAA
Shewanella piezotolerans WP3 swp_2572 -217 5.6 TTGATCTAGATCAA
-174 4.3 TTGACATAGCTCAA
Shewanella putrefaciens CN-32 Sputcn32_1959 -210 5.6 TTGATCTAGATCAA
-167 3.9 TTGACATTGCTCAA
Shewanella sediminis HAW-EB3 Ssed_2211 -216 5.6 TTGATCTAGATCAA
-173 4.3 TTGACATAGCTCAA
Shewanella sp ANA-3 Shewana3_2107 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp MR-4 Shewmr4_2006 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp MR-7 Shewmr7_1969 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp W3-18-1 Sputw3181_2046 -210 5.6 TTGATCTAGATCAA
-167 3.9 TTGACATTGCTCAA
Shewanella woodyi ATCC 51908 Swoo_2425 -216 5.6 TTGATCTAGATCAA
-173 4.3 TTGACATAGCTCAA
Position: -153
Score: 4.5
Sequence: GTGAATTAGATCAA
Position: -103
Score: 5.3
Sequence: TTGATCCAGATCAA
Locus tag: Sden_2589
Sden_2589 -153 4.5 GTGAATTAGATCAA
-103 5.3 TTGATCCAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Shewanella amazonensis SB2B Sama_1371 -105 5.2 TTGATTTGGATCAA
Shewanella baltica OS155 Sbal_1490 -103 5.2 TTGATTTGGATCAA
Shewanella denitrificans OS217 Sden_2589 -153 4.5 GTGAATTAGATCAA
-103 5.3 TTGATCCAGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_1334 -166 4.6 GTGATCCAAATCAA
-105 5.3 TTGATCTAAATCAA
Shewanella halifaxensis HAW-EB4 Shal_2887 -107 4.4 TTGATTCAGGTCAA
Shewanella oneidensis MR-1 SO1673 -293 4.3 TTGATGTAAATGAA
-106 5.2 TTGATTTGGATCAA
Shewanella pealeana ATCC 700345 Spea_2787 -155 4.3 GTGATCTAGATCCT
-104 5.3 TTGATTTAGATCAA
Shewanella piezotolerans WP3 swp_3395 -107 5.6 TTGATCTAGATCAA
Shewanella putrefaciens CN-32 Sputcn32_1392 -103 5.3 TTGATTTAGATCAA
Shewanella sediminis HAW-EB3 Ssed_1469 -154 3.8 GTGAGCTTGGTCAT
-104 5.6 TTGATCTGGATCAA
Shewanella sp ANA-3 Shewana3_2775 -103 5.2 TTGATTTGGATCAA
Shewanella sp MR-4 Shewmr4_2601 -103 5.2 TTGATTTGGATCAA
Shewanella sp MR-7 Shewmr7_2668 -103 5.2 TTGATTTGGATCAA
Shewanella sp W3-18-1 Sputw3181_2709 -103 5.3 TTGATTTAGATCAA
Shewanella woodyi ATCC 51908 Swoo_3207 -154 4.1 GTGAGTTCGATCAA
-104 5.2 TTGATTTGGATCAA
Position: -153
Score: 5
Sequence: TTGATCTAGATCAC
Locus tag: Sden_2784
Sden_2784 -153 5 TTGATCTAGATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaB
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Shewanella amazonensis SB2B Sama_0861 -98 4.3 TTGATTCAGATCAC
Shewanella baltica OS155 Sbal_1182 -97 4.6 TTGATCCAGATCAC
Shewanella denitrificans OS217 Sden_2784 -153 5 TTGATCTAGATCAC
Shewanella frigidimarina NCIMB 400 Sfri_2947 -154 4.6 TTGATCTAAATCAC
Shewanella halifaxensis HAW-EB4 Shal_1065 -95 4 TTGACTTAGATCAC
Shewanella loihica PV-4 Shew_1036 -158 4 TTGACTTAGATCAC
Shewanella oneidensis MR-1 SO1329 -158 4.6 TTGATCCAGATCAC
Shewanella pealeana ATCC 700345 Spea_1019 -96 4 TTGACTTAGATCAC
Shewanella piezotolerans WP3 swp_3798 -94 4 TTGACTTAGATCAC
Shewanella putrefaciens CN-32 Sputcn32_1140 -97 4.6 TTGATCCAGATCAC
Shewanella sp ANA-3 Shewana3_3045 -158 4.6 TTGATCCAGATCAC
Shewanella sp MR-4 Shewmr4_2867 -158 4.6 TTGATCCAGATCAC
Shewanella sp MR-7 Shewmr7_2949 -158 4.6 TTGATCCAGATCAC
Shewanella sp W3-18-1 Sputw3181_3024 -97 4.6 TTGATCCAGATCAC
Position: -312
Score: 4.9
Sequence: GTGATCTTGATCAA
Locus tag: Sden_3517
Sden_3517 -312 4.9 GTGATCTTGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: coxB
Ortholog function: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
Shewanella amazonensis SB2B Sama_3483 -314 4.9 GTGATCTTGATCAA
Shewanella baltica OS155 Sbal_0154 -313 4.9 GTGATCTTGATCAA
Shewanella denitrificans OS217 Sden_3517 -312 4.9 GTGATCTTGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_0258 -317 4.9 GTGATCTTGATCAA
-209 4.8 ATGATCCAAATCAA
Shewanella halifaxensis HAW-EB4 Shal_0258 -372 4.9 GTGATCTTGATCAA
Shewanella loihica PV-4 Shew_0125 -317 4.9 GTGATCTTGATCAA
Shewanella oneidensis MR-1 SO4606 -313 4.9 GTGATCTTGATCAA
Shewanella pealeana ATCC 700345 Spea_3999 -349 4.9 GTGATCTTGATCAA
-246 4.2 TAGATCCTGATCAA
Shewanella piezotolerans WP3 swp_4823 -366 4.9 GTGATCTTGATCAA
Shewanella putrefaciens CN-32 Sputcn32_3782 -305 4.9 GTGATCTTGATCAA
Shewanella sediminis HAW-EB3 Ssed_0198 -339 5.2 TTGATCTTGATCAA
Shewanella sp ANA-3 Shewana3_3991 -314 4.9 GTGATCTTGATCAA
Shewanella sp MR-4 Shewmr4_3791 -314 4.9 GTGATCTTGATCAA
Shewanella sp MR-7 Shewmr7_3864 -313 4.9 GTGATCTTGATCAA
Shewanella sp W3-18-1 Sputw3181_0133 -305 4.9 GTGATCTTGATCAA
Shewanella woodyi ATCC 51908 Swoo_0178 -337 4.9 GTGATCTTGATCAA
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