Propagation of FadR regulog to Shewanella pealeana ATCC 700345
| Source regulog: | FadR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor (activator) |
| Biological process: | Fatty acid degradation |
| Effector: | Palmitoyl-CoA; Oleoyl-CoA |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella pealeana ATCC 700345 |
| Orthologous TF(s) | Spea_2438 |
| Regulated genes | 4 |
Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -94
Score: 4.9 Sequence: TAATGGTCAGACCTGTC
Locus tag: Spea_2599
|
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| Spea_2599 | -94 | 4.9 | TAATGGTCAGACCTGTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadI | ||||
| Ortholog function: FadI component of anaerobic fatty acid oxidation complex | ||||
| Shewanella oneidensis MR-1 | SO_3089 | -109 | 5.2 | TAATGGTCAGACCTGTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2460 | -114 | 5.2 | TAATGGTCAGACCTGTT |
| Shewanella sp W3-18-1 | Sputw3181_1548 | -114 | 5.2 | TAATGGTCAGACCTGTT |
| Shewanella sp ANA-3 | Shewana3_1460 | -113 | 5.2 | TAATGGTCAGACCTGTT |
| Shewanella sp MR-4 | Shewmr4_1407 | -113 | 5.2 | TAATGGTCAGACCTGTT |
| Shewanella sp MR-7 | Shewmr7_1472 | -113 | 5.2 | TAATGGTCAGACCTGTT |
| Shewanella baltica OS155 | Sbal_2761 | -114 | 5.2 | TAATGGTCAGACCTGTT |
| Shewanella denitrificans OS217 | Sden_1529 | -88 | 4.7 | TGATGGTCAGACCAGAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2677 | -82 | 4.9 | TGATGGTCTGACCAGAT |
| Shewanella amazonensis SB2B | Sama_2168 | -89 | 5.2 | TAATGGTCAGACCTGTT |
| Shewanella loihica PV-4 | Shew_2426 | -112 | 4.9 | TGATGGTCTGACCTGTT |
| Shewanella pealeana ATCC 700345 | Spea_2599 | -94 | 4.9 | TAATGGTCAGACCTGTC |
| Shewanella halifaxensis HAW-EB4 | Shal_2671 | -97 | 5.2 | TAATGGTCAGACCTGTT |
| Shewanella piezotolerans WP3 | swp_3140 | -100 | 5.2 | TAATGGTCAGACCTGTT |
| Shewanella sediminis HAW-EB3 | Ssed_1628 | -129 | 4.9 | TGATGGTCAGACCTGTT |
| Shewanella woodyi ATCC 51908 | Swoo_3027 | -116 | 5.2 | TAATGGTCAGACCTGTT |
|
Position: -118
Score: 4.5 Sequence: TTCTGGTCGGAGTTGTT
Locus tag: Spea_2609
|
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| Spea_2609 | -118 | 4.5 | TTCTGGTCGGAGTTGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadL | ||||
| Ortholog function: Long-chain fatty acid transport protein | ||||
| Shewanella oneidensis MR-1 | SO_3099 | -196 | 4.8 | ATCTGGCCAGACCATTC |
| -125 | 5.1 | ATCTGGTCGGACTTGTT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_2470 | -187 | 4.8 | GTCTGGCCAGACCATTT |
| -104 | 5.1 | ATCTGGTCGGACTTGTT | ||
| Shewanella sp W3-18-1 | Sputw3181_1538 | -187 | 4.8 | GTCTGGCCAGACCATTT |
| -104 | 5.1 | ATCTGGTCGGACTTGTT | ||
| Shewanella sp ANA-3 | Shewana3_1450 | -196 | 4.8 | ATCTGGCCCGACCATTC |
| -125 | 5.1 | ATCTGGTCGGACTTGTT | ||
| Shewanella sp MR-4 | Shewmr4_1397 | -196 | 4.8 | ATCTGGCCAGACCATTC |
| -125 | 5.1 | ATCTGGTCGGACTTGTT | ||
| Shewanella sp MR-7 | Shewmr7_1462 | -196 | 4.8 | ATCTGGCCAGACCATTC |
| -125 | 5.1 | ATCTGGTCGGACTTGTT | ||
| Shewanella baltica OS155 | Sbal_2771 | -211 | 4.8 | ATCTGGCCAGACCATTC |
| -129 | 5.1 | ATCTGGTCGGACTTGTT | ||
| Shewanella denitrificans OS217 | Sden_1414 | -76 | 4.8 | AACTGGTCGGAGTTGTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2687 | -117 | 4.6 | ATCTGGTCGGAGTTGTT |
| Shewanella amazonensis SB2B | Sama_2178 | -190 | 4.7 | AACTGGCCCGGCCAGAC |
| -85 | 4.7 | CTCTGGTCGGACTTGTT | ||
| Shewanella loihica PV-4 | Shew_2436 | -133 | 4.6 | ATCTGGTCGGAGTTGTT |
| Shewanella pealeana ATCC 700345 | Spea_2609 | -118 | 4.5 | TTCTGGTCGGAGTTGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2681 | -39 | 4.5 | TTCTGGTCGGAGTTGTT |
| Shewanella piezotolerans WP3 | swp_3153 | -116 | 4.2 | CTCTGGTCGGAGTTGTT |
| Shewanella sediminis HAW-EB3 | Ssed_1618 | -126 | 4.4 | GTCTGGTCGGAGTTGTT |
| Shewanella woodyi ATCC 51908 | Swoo_3037 | -127 | 4.6 | ATCTGGTCGGAGTTGTT |
|
Position: -36
Score: 4.1 Sequence: TTCTGGACAGACCACTT
Locus tag: Spea_3709
|
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| Spea_3709 | -36 | 4.1 | TTCTGGACAGACCACTT | |
| Supported by regulated orthologs from reference regulons | ||||