Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of TyrR regulog to Shewanella sp W3-18-1

Reference regulog properties
Source regulog: TyrR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sp W3-18-1
Orthologous TF(s) Sputw3181_2713
Regulated genes 23
Built upon 312 sites [see more]
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

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Predicted regulatory interactions in Shewanella sp W3-18-1
Locus tag Position Score Sequence
Position: -179
Score: 4.5
Sequence: GTGTAAATAAAAAGTGGCAT
Locus tag: Sputw3181_0260
Sputw3181_0260 -179 4.5 GTGTAAATAAAAAGTGGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tdo
Ortholog function: tryptophan 2,3-dioxygenase
Shewanella oneidensis MR-1 SO_4414 -175 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella putrefaciens CN-32 Sputcn32_0406 -179 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella sp W3-18-1 Sputw3181_0260 -179 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella sp ANA-3 Shewana3_0294 -179 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella sp MR-4 Shewmr4_0294 -179 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella sp MR-7 Shewmr7_3725 -180 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella baltica OS155 Sbal_0303 -159 4.6 GTGTAAATAAAAAATGGCAT
Shewanella denitrificans OS217 Sden_3451 -122 4.3 TCGGAAGTTAAACTTTACAT
Position: -194
Score: 4.8
Sequence: TTGTCAATTAAGCGTTACAT
Locus tag: Sputw3181_0845
Sputw3181_0845 -194 4.8 TTGTCAATTAAGCGTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putA
Ortholog function: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Shewanella oneidensis MR-1 SO_3774 -212 4.8 TTGTCAATCAAGCGTTACAT
Shewanella putrefaciens CN-32 Sputcn32_3099 -194 4.8 TTGTCAATTAAGCGTTACAT
Shewanella sp W3-18-1 Sputw3181_0845 -194 4.8 TTGTCAATTAAGCGTTACAT
Shewanella sp ANA-3 Shewana3_0819 -197 4.6 TTGTCAATTGAGCGTTACAT
Shewanella sp MR-4 Shewmr4_3122 -198 4.6 TTGTCAATTGAGCGTTACAT
Shewanella sp MR-7 Shewmr7_0850 -197 4.6 TTGTCAATTGAGCGTTACAT
Shewanella baltica OS155 Sbal_3458 -194 4.8 TTGTCAATCAAGCGTTACAT
Shewanella amazonensis SB2B Sama_2676 -219 4 TTGTCAAGTGGGCGTTACGC
Shewanella sediminis HAW-EB3 Ssed_3846 -109 4 TTGTATACAAAAAATAACAA
Position: -155
Score: 5.2
Sequence: GTGGAAAGCTAAATTGCCAC
Locus tag: Sputw3181_1771
Sputw3181_1771 -155 5.2 GTGGAAAGCTAAATTGCCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ldh
Ortholog function: Leucine dehydrogenase (EC 1.4.1.9)
Shewanella oneidensis MR-1 SO_2638 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella putrefaciens CN-32 Sputcn32_2238 -155 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella sp W3-18-1 Sputw3181_1771 -155 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella sp ANA-3 Shewana3_1742 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella sp MR-4 Shewmr4_1598 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella sp MR-7 Shewmr7_1673 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella baltica OS155 Sbal_2483 -134 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella denitrificans OS217 Sden_1823 -140 4.9 GTGGCAAGCAAAATTGCCAC
Shewanella frigidimarina NCIMB 400 Sfri_2265 -178 5.2 GTGGCAAGCTAAATTTCCAC
Shewanella amazonensis SB2B Sama_2067 -147 5.1 GTGGAAAGCAAAATTGCCAC
Shewanella loihica PV-4 Shew_1555 -157 5.1 GTGGAAAGCAAAATTGCCAC
Shewanella pealeana ATCC 700345 Spea_2543 -157 4.9 GTGGAAAGCAAAATTGCCAG
Shewanella halifaxensis HAW-EB4 Shal_1711 -157 4.9 GTGGAAAGCAAAATTGCCAG
Shewanella piezotolerans WP3 swp_1857 -158 4.8 GTGGAAAGCAGAATTGCCAC
Shewanella sediminis HAW-EB3 Ssed_1877 -156 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella woodyi ATCC 51908 Swoo_2710 -157 5.1 GTGGAAAGCAAAATTGCCAC
Position: -156
Score: 4
Sequence: TTGGCAGGCTTTTTTGCCAA
Locus tag: Sputw3181_1967
Sputw3181_1967 -156 4 TTGGCAGGCTTTTTTGCCAA
Supported by regulated orthologs from reference regulons