Propagation of HexR regulog to Shewanella sp W3-18-1
| Source regulog: | HexR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | RpiR |
| Regulation mode: | repressor (activator) |
| Biological process: | Central carbohydrate metabolism |
| Effector: | 2-keto-3-deoxy-6-phosphogluconate |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella sp W3-18-1 |
| Orthologous TF(s) | Sputw3181_2143 |
| Regulated genes | 19 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -176
Score: 5.1 Sequence: ATGTAAAAAAATTACAT
Locus tag: Sputw3181_0730
|
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| Sputw3181_0730 | -176 | 5.1 | ATGTAAAAAAATTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gcvT | ||||
| Ortholog function: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) | ||||
| Shewanella oneidensis MR-1 | SO_0779 | -320 | 5.1 | ATGTAAAAAAATTACAT |
| Shewanella putrefaciens CN-32 | Sputcn32_3211 | -176 | 5.1 | ATGTAAAAAAATTACAT |
| Shewanella sp W3-18-1 | Sputw3181_0730 | -176 | 5.1 | ATGTAAAAAAATTACAT |
| Shewanella sp ANA-3 | Shewana3_3501 | -320 | 5.1 | ATGTAAAAAAATTACAT |
| Shewanella sp MR-4 | Shewmr4_3331 | -322 | 5.1 | ATGTAAAAAAATTACAT |
| Shewanella sp MR-7 | Shewmr7_0622 | -321 | 5.1 | ATGTAAAAAAATTACAT |
| Shewanella baltica OS155 | Sbal_0617 | -372 | 5.1 | ATGTAAAAAAATTACAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3151 | -154 | 5.3 | ATGTAAAAAAATTACAA |
| Shewanella loihica PV-4 | Shew_3064 | -395 | 4.9 | ATGTAAAAAAACTACAT |
| Shewanella halifaxensis HAW-EB4 | Shal_3375 | -237 | 4.2 | ATGTAAAAAGTTTACAT |
| Shewanella piezotolerans WP3 | swp_0913 | -187 | 4.9 | GTGTAAATAAATTACAT |
| -48 | 4.5 | GTCTTATAATATTACAG | ||
| Shewanella sediminis HAW-EB3 | Ssed_3675 | -237 | 4.9 | ATGTAAAAAAACTACAT |
|
Position: -125
Score: 4.4 Sequence: TTGAAATTAAACTCCAA
Locus tag: Sputw3181_1187
|
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| Sputw3181_1187 | -125 | 4.4 | TTGAAATTAAACTCCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nupC | ||||
| Ortholog function: nucleoside transporter, NupC family | ||||
| Shewanella oneidensis MR-1 | SO_1214 | -125 | 4.4 | TTGAAATTAAACTCCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_2824 | -125 | 4.4 | TTGAAATTAAACTCCAA |
| Shewanella sp W3-18-1 | Sputw3181_1187 | -125 | 4.4 | TTGAAATTAAACTCCAA |
| Shewanella sp ANA-3 | Shewana3_1039 | -125 | 4.4 | TTGAAATTAAACTCCAA |
| Shewanella sp MR-4 | Shewmr4_1035 | -125 | 4.4 | TTGAAATTAAACTCCAA |
| Shewanella sp MR-7 | Shewmr7_1100 | -125 | 4.4 | TTGAAATTAAACTCCAA |
| Shewanella baltica OS155 | Sbal_3229 | -125 | 4.4 | TTGAAATTAAACTCCAA |
| Shewanella denitrificans OS217 | Sden_1023 | -148 | 4.2 | TTGCAATTATTTTTCAT |
| Shewanella amazonensis SB2B | Sama_0971 | -125 | 4.3 | TTGAAATTTAAGTTCAA |
| Shewanella loihica PV-4 | Shew_2817 | -125 | 4.6 | TTGAAATAAAACTTCAA |
| Shewanella piezotolerans WP3 | swp_1227 | -125 | 4.6 | TTGAAATAAAACTTCAA |
| Shewanella woodyi ATCC 51908 | Swoo_3551 | -124 | 4.4 | CTGAAATTAAACTTCAA |
|
Position: -86
Score: 4.9 Sequence: TTGTAATATTGCTACAG
Locus tag: Sputw3181_1190
|
||||
| Sputw3181_1190 | -86 | 4.9 | TTGTAATATTGCTACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: deoA | ||||
| Ortholog function: Thymidine phosphorylase (EC 2.4.2.4) | ||||
| Shewanella oneidensis MR-1 | SO_1218 | -85 | 4.9 | TTGTAATATTGCTACAG |
| Shewanella putrefaciens CN-32 | Sputcn32_2821 | -86 | 4.9 | TTGTAATATTGCTACAG |
| Shewanella sp W3-18-1 | Sputw3181_1190 | -86 | 4.9 | TTGTAATATTGCTACAG |
| Shewanella sp ANA-3 | Shewana3_1042 | -85 | 4.9 | TTGTAATATTGCTACAG |
| Shewanella sp MR-4 | Shewmr4_1038 | -85 | 4.9 | TTGTAATATTGCTACAG |
| Shewanella sp MR-7 | Shewmr7_1103 | -85 | 4.9 | TTGTAATATTGCTACAG |
| Shewanella baltica OS155 | Sbal_3226 | -86 | 4.9 | TTGTAATATTGCTACAG |
| Shewanella amazonensis SB2B | Sama_0974 | -85 | 5 | CTGTAATATTTTTACAG |
| Shewanella loihica PV-4 | Shew_2814 | -85 | 4.6 | TCGTAATTAAATTACGG |
| Shewanella pealeana ATCC 700345 | Spea_3047 | -94 | 4.7 | ATGTAACAATATTACGA |
| Shewanella halifaxensis HAW-EB4 | Shal_3135 | -94 | 4.5 | ATGTAACAATATTACGG |
| Shewanella piezotolerans WP3 | swp_1230 | -103 | 4 | CCGTTATTATGTAACAA |
| -95 | 4.5 | ATGTAACAATATTACGG | ||
| Shewanella sediminis HAW-EB3 | Ssed_3377 | -85 | 5.2 | TTGTAATTAAATTACGT |
| Shewanella woodyi ATCC 51908 | Swoo_3548 | -108 | 4.9 | ATGTAGTAAATTTACAT |
|
Position: -112
Score: 5.5 Sequence: TAGTAATAAAATTACAA
Locus tag: Sputw3181_1765
|
||||
| Sputw3181_1765 | -112 | 5.5 | TAGTAATAAAATTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ppsA | ||||
| Ortholog function: Phosphoenolpyruvate synthase (EC 2.7.9.2) | ||||
| Shewanella oneidensis MR-1 | SO_2644 | -113 | 5.5 | TAGTAATAAAATTACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_2243 | -112 | 5.5 | TAGTAATAAAATTACAA |
| Shewanella sp W3-18-1 | Sputw3181_1765 | -112 | 5.5 | TAGTAATAAAATTACAA |
| Shewanella sp ANA-3 | Shewana3_1736 | -112 | 5.5 | TAGTAATAAAATTACAA |
| Shewanella sp MR-4 | Shewmr4_1592 | -112 | 5.5 | TAGTAATAAAATTACAA |
| Shewanella baltica OS155 | Sbal_2488 | -112 | 5.5 | TAGTAATAAAATTACAA |
| Shewanella denitrificans OS217 | Sden_2009 | -112 | 5.5 | TAGTAATAAAATTACAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2297 | -57 | 5.5 | TAGTAATAAAATTACAA |
| Shewanella amazonensis SB2B | Sama_2072 | -112 | 5.5 | TAGTAATAAAATTACAA |
| Shewanella loihica PV-4 | Shew_1549 | -114 | 5.5 | TAGTAATAAAATTACAA |
| Shewanella pealeana ATCC 700345 | Spea_2549 | -114 | 5.5 | TAGTAATAAAATTACAA |
| Shewanella halifaxensis HAW-EB4 | Shal_1705 | -114 | 5.5 | TAGTAATAAAATTACAA |
| Shewanella piezotolerans WP3 | swp_1851 | -150 | 5.5 | TAGTAATAAAATTACAA |
| Shewanella sediminis HAW-EB3 | Ssed_1871 | -114 | 5.5 | TAGTAATAAAATTACAA |
| Shewanella woodyi ATCC 51908 | Swoo_2715 | -114 | 5.5 | TAGTAATAAAATTACAA |
|
Position: -181
Score: 5.2 Sequence: TTCTAATAAAATTACAT
Locus tag: Sputw3181_2117
|
||||
| Sputw3181_2117 | -181 | 5.2 | TTCTAATAAAATTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gapB | ||||
| Ortholog function: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) | ||||
| Shewanella oneidensis MR-1 | SO_2347 | -182 | 5 | CTCTAATAAAATTACAG |
| Shewanella putrefaciens CN-32 | Sputcn32_1891 | -181 | 5.2 | TTCTAATAAAATTACAT |
| Shewanella sp W3-18-1 | Sputw3181_2117 | -181 | 5.2 | TTCTAATAAAATTACAT |
| Shewanella sp ANA-3 | Shewana3_2122 | -183 | 5 | CTCTAATAAAATTACAG |
| Shewanella sp MR-4 | Shewmr4_2021 | -183 | 5 | CTCTAATAAAATTACAG |
| Shewanella sp MR-7 | Shewmr7_1954 | -183 | 5 | CTCTAATAAAATTACAG |
| Shewanella baltica OS155 | Sbal_2216 | -181 | 5.2 | TTCTAATAAAATTACAG |
| Shewanella denitrificans OS217 | Sden_1793 | -181 | 5.1 | ATCTAATAAAATTACAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1942 | -178 | 4.6 | GTCTAATAAAATTACAC |
| Shewanella amazonensis SB2B | Sama_1806 | -181 | 5.2 | CTCTAATAAAATTACAA |
| Shewanella loihica PV-4 | Shew_2000 | -181 | 4.9 | ATCTAATAAAATTACAC |
| Shewanella pealeana ATCC 700345 | Spea_2106 | -182 | 5 | ATCTAATAAAATTACAG |
| Shewanella halifaxensis HAW-EB4 | Shal_2078 | -182 | 5.2 | TTCTAATAAAATTACAT |
| Shewanella piezotolerans WP3 | swp_2537 | -347 | 5.1 | ATCTAATTAAATTACAT |
| Shewanella sediminis HAW-EB3 | Ssed_2226 | -182 | 4.9 | TGCTAATAAAATTACAA |
| Shewanella woodyi ATCC 51908 | Swoo_2395 | -179 | 4.9 | TGCTAATAAAATTACAA |
|
Position: -49
Score: 4.6 Sequence: TGGTAATTTTACTACCA
Locus tag: Sputw3181_2119
|
||||
| Sputw3181_2119 | -49 | 4.6 | TGGTAATTTTACTACCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gapA2 | ||||
| Ortholog function: glyceraldehyde-3-phosphate dehydrogenase, type I | ||||
| Shewanella oneidensis MR-1 | SO_2345 | -49 | 4.6 | TGGTAATTTTACTACCA |
| Shewanella putrefaciens CN-32 | Sputcn32_1889 | -49 | 4.6 | TGGTAATTTTACTACCA |
| Shewanella sp W3-18-1 | Sputw3181_2119 | -49 | 4.6 | TGGTAATTTTACTACCA |
| Shewanella sp ANA-3 | Shewana3_2124 | -49 | 4.6 | TGGTAATTTTACTACCA |
| Shewanella sp MR-4 | Shewmr4_2023 | -49 | 4.6 | TGGTAATTTTACTACCA |
| Shewanella sp MR-7 | Shewmr7_1952 | -49 | 4.6 | TGGTAATTTTACTACCA |
| Shewanella baltica OS155 | Sbal_2218 | -49 | 4.6 | TGGTAATTTTACTACCA |
| Shewanella denitrificans OS217 | Sden_1791 | -63 | 4.4 | TGGTAATTTTACAACTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1940 | -136 | 4.7 | ATGTAAAAAAAATACAA |
| -62 | 4.2 | TGGTAATTTTACAACCA | ||
| Shewanella amazonensis SB2B | Sama_1808 | -122 | 4.4 | ATGTAAAAATATAACGA |
| -48 | 4.6 | TGGTAATTTTACTACCA | ||
| Shewanella loihica PV-4 | Shew_2002 | -175 | 4.3 | TAGTATTTTTTTTACAG |
| -50 | 4.6 | TGGTAATTTTACTACCA | ||
| Shewanella pealeana ATCC 700345 | Spea_2104 | -126 | 4.6 | ATGTAAAAAAATTACCT |
| -51 | 4.2 | TGGTAATTTTACAACCA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2076 | -128 | 4.4 | GTGTAAAAAAATTACCG |
| -53 | 4.6 | TGGTAATTTTACTACCA | ||
| Shewanella piezotolerans WP3 | swp_2533 | -126 | 4.6 | ATGTAAAAAAATTACCT |
| -51 | 4.6 | TGGTAATTTTACTACCA | ||
| Shewanella sediminis HAW-EB3 | Ssed_2228 | -51 | 4.6 | TGGTAATTTTACTACCA |
| Shewanella woodyi ATCC 51908 | Swoo_2393 | -51 | 4.6 | TGGTAATTTTACTACCA |
|
Position: -78
Score: 5 Sequence: CTGTTGTTATATTACAA
Locus tag: Sputw3181_2142
|
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| Sputw3181_2142 | -78 | 5 | CTGTTGTTATATTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: zwf | ||||
| Ortholog function: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) | ||||
| Shewanella oneidensis MR-1 | SO_2489 | -78 | 5 | CTGTTGTTATATTACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1866 | -78 | 5 | CTGTTGTTATATTACAA |
| Shewanella sp W3-18-1 | Sputw3181_2142 | -78 | 5 | CTGTTGTTATATTACAA |
| Shewanella sp ANA-3 | Shewana3_2151 | -79 | 5 | CTGTTGTTATATTACAA |
| Shewanella sp MR-4 | Shewmr4_2046 | -79 | 5 | CTGTTGTTATATTACAA |
| Shewanella sp MR-7 | Shewmr7_1929 | -79 | 5 | CTGTTGTTATATTACAA |
| Shewanella baltica OS155 | Sbal_2241 | -79 | 5 | CTGTTGTTATATTACAA |
| Shewanella denitrificans OS217 | Sden_2079 | -260 | 4.2 | TAGTTGTTTTATTACCT |
| -88 | 5 | CTGTTGTTATATTACAA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_1892 | -232 | 4.5 | CTGTAGTTATTTTTCAA |
| -88 | 5 | CTGTTGTTATATTACAA | ||
| Shewanella amazonensis SB2B | Sama_1812 | -78 | 5 | CTGTTGTTATATTACAA |
| Shewanella loihica PV-4 | Shew_2048 | -174 | 4.8 | TAGTAATTTAATCACAA |
| -76 | 5 | CTGTTGTTATATTACAA | ||
| Shewanella pealeana ATCC 700345 | Spea_2335 | -54 | 5 | CTGTTGTTATATTACAA |
| Shewanella halifaxensis HAW-EB4 | Shal_1949 | -175 | 4.8 | TAGTAATTTTATCACAA |
| -78 | 5 | CTGTTGTTATATTACAA | ||
| Shewanella piezotolerans WP3 | swp_2390 | -175 | 4.3 | TAGTAATTTTATCACGA |
| -78 | 5 | CTGTTGTTATATTACAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_2070 | -176 | 4.3 | TAGTAATTTAATCACGA |
| -78 | 5 | CTGTTGTTATATTACAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_2539 | -175 | 4.8 | TAGTAATTTAATCACAA |
| -77 | 5 | CTGTTGTTATATTACAA | ||
|
Position: -249
Score: 5 Sequence: TTGTAATATAACAACAG
Locus tag: Sputw3181_2143
|
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| Sputw3181_2143 | -249 | 5 | TTGTAATATAACAACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hexR | ||||
| Ortholog function: Central carbohydrate metabolism transcription regulator HexR, RpiR family | ||||
| Shewanella oneidensis MR-1 | SO_2490 | -249 | 5 | TTGTAATATAACAACAG |
| Shewanella putrefaciens CN-32 | Sputcn32_1865 | -252 | 4.8 | TTGTTGTAATATAACAA |
| -249 | 5 | TTGTAATATAACAACAG | ||
| Shewanella sp W3-18-1 | Sputw3181_2143 | -249 | 5 | TTGTAATATAACAACAG |
| Shewanella sp ANA-3 | Shewana3_2152 | -250 | 5 | TTGTAATATAACAACAG |
| Shewanella sp MR-4 | Shewmr4_2047 | -250 | 5 | TTGTAATATAACAACAG |
| Shewanella sp MR-7 | Shewmr7_1928 | -250 | 5 | TTGTAATATAACAACAG |
| Shewanella baltica OS155 | Sbal_2242 | -250 | 5 | TTGTAATATAACAACAG |
| Shewanella denitrificans OS217 | Sden_2080 | -249 | 5 | TTGTAATATAACAACAG |
| Shewanella frigidimarina NCIMB 400 | Sfri_1891 | -266 | 5 | TTGTAATATAACAACAG |
| -122 | 4.5 | TTGAAAAATAACTACAG | ||
| -54 | 4.6 | ATGATATAAAATTACAT | ||
| Shewanella amazonensis SB2B | Sama_1813 | -251 | 5 | TTGTAATATAACAACAG |
| Shewanella loihica PV-4 | Shew_2049 | -249 | 5 | TTGTAATATAACAACAG |
| -151 | 4.8 | TTGTGATTAAATTACTA | ||
| Shewanella pealeana ATCC 700345 | Spea_2336 | -254 | 5 | TTGTAATATAACAACAG |
| -157 | 4.3 | TCGTGATAAAATTACTA | ||
| -40 | 4.5 | ATATAATAAAACTACAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1948 | -252 | 5 | TTGTAATATAACAACAG |
| -155 | 4.8 | TTGTGATAAAATTACTA | ||
| Shewanella piezotolerans WP3 | swp_2389 | -252 | 5 | TTGTAATATAACAACAG |
| -155 | 4.3 | TCGTGATAAAATTACTA | ||
| -40 | 4.5 | ATATAATAAAACTACAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_2069 | -248 | 5 | TTGTAATATAACAACAG |
| -150 | 4.3 | TCGTGATTAAATTACTA | ||
| Shewanella woodyi ATCC 51908 | Swoo_2540 | -248 | 5 | TTGTAATATAACAACAG |
| -150 | 4.8 | TTGTGATTAAATTACTA | ||
|
Position: -75
Score: 5 Sequence: TTGTAACTTTACTACAT
Locus tag: Sputw3181_2144
|
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| Sputw3181_2144 | -75 | 5 | TTGTAACTTTACTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pykA | ||||
| Ortholog function: Pyruvate kinase (EC 2.7.1.40) | ||||
| Shewanella oneidensis MR-1 | SO_2491 | -76 | 5 | TTGTAACTTTACTACAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1864 | -75 | 5 | TTGTAACTTTACTACAT |
| Shewanella sp W3-18-1 | Sputw3181_2144 | -75 | 5 | TTGTAACTTTACTACAT |
| Shewanella sp ANA-3 | Shewana3_2153 | -76 | 5 | TTGTAACTTTACTACAT |
| Shewanella sp MR-4 | Shewmr4_2048 | -75 | 5 | TTGTAACTTTACTACAT |
| Shewanella sp MR-7 | Shewmr7_1927 | -75 | 5 | TTGTAACTTTACTACAT |
| Shewanella baltica OS155 | Sbal_2243 | -77 | 5 | TTGTAACTTTACTACAT |
| Shewanella denitrificans OS217 | Sden_2081 | -163 | 5 | TTGTAACTTTACTACAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1890 | -134 | 4.5 | TGGTAACTTTACTACAT |
| Shewanella amazonensis SB2B | Sama_1814 | -77 | 4.6 | TTGTAACTTTCCTACAT |
| Shewanella loihica PV-4 | Shew_2050 | -75 | 5.1 | TTGTAATTTTCCTACAA |
| Shewanella pealeana ATCC 700345 | Spea_2337 | -76 | 4.7 | TCGTAAATTTACTACAA |
| Shewanella halifaxensis HAW-EB4 | Shal_1947 | -76 | 4.7 | TCGTAATTTTACTACAC |
| Shewanella piezotolerans WP3 | swp_2388 | -76 | 4.9 | TCGTAATTTTACTACAT |
| Shewanella sediminis HAW-EB3 | Ssed_2068 | -76 | 5.1 | TTGTAATTTTCCTACAA |
| Shewanella woodyi ATCC 51908 | Swoo_2541 | -76 | 5.1 | TTGTAATTTTCCTACAA |
|
Position: -135
Score: 5.5 Sequence: TTGTAGTTTTATTACAA
Locus tag: Sputw3181_2214
|
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| Sputw3181_2214 | -135 | 5.5 | TTGTAGTTTTATTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1811 | -135 | 5.5 | TTGTAGTTTTATTACAA |
| Shewanella sp W3-18-1 | Sputw3181_2214 | -135 | 5.5 | TTGTAGTTTTATTACAA |
| Shewanella sp ANA-3 | Shewana3_1788 | -134 | 4.8 | CTGTATTTTTATTACAT |
| Shewanella sp MR-4 | Shewmr4_1683 | -134 | 4.8 | CTGTATTTTTATTACAT |
| Shewanella sp MR-7 | Shewmr7_1758 | -134 | 4.8 | CTGTATTTTTATTACAT |
| Shewanella baltica OS155 | Sbal_1922 | -135 | 5 | GTGTAGTTTTATTACAT |
| Shewanella denitrificans OS217 | Sden_2000 | -136 | 5.4 | CTGTAATTAAATTACAG |
| Shewanella frigidimarina NCIMB 400 | Sfri_1898 | -131 | 5.4 | CTGTAATAAAATTACAT |
| -67 | 4.2 | TTGTAATTTTATTTACA | ||
| Shewanella amazonensis SB2B | Sama_1693 | -142 | 4.3 | CTGTTGTTTTATTTCAG |
| Shewanella loihica PV-4 | Shew_1910 | -136 | 5.1 | ATGTTATTTTATTACAT |
| -72 | 4.1 | GTGTAATTTTCCTTCAT | ||
| Shewanella pealeana ATCC 700345 | Spea_2044 | -153 | 4.6 | TGGTTATAAAATTACAC |
| Shewanella halifaxensis HAW-EB4 | Shal_2250 | -153 | 4.8 | TGGTTATAAAATTACAG |
| -89 | 4.2 | GTGTAATTTTTCTTCAT | ||
| Shewanella piezotolerans WP3 | swp_2623 | -150 | 4.9 | TAGTTATTTTATTACAG |
| Shewanella sediminis HAW-EB3 | Ssed_2349 | -137 | 4.8 | TCGTTATTTTATTACAT |
| Shewanella woodyi ATCC 51908 | Swoo_2241 | -146 | 4.6 | ACGTTATTTAATTACAT |
|
Position: -82
Score: 5 Sequence: TGGTAATTAAGTTACAA
Locus tag: Sputw3181_2302
|
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| Sputw3181_2302 | -82 | 5 | TGGTAATTAAGTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gnd | ||||
| Ortholog function: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) | ||||
| Shewanella oneidensis MR-1 | SO_1902 | -82 | 5 | TGGTAATTAAGTTACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1723 | -82 | 5 | TGGTAATTAAGTTACAA |
| Shewanella sp W3-18-1 | Sputw3181_2302 | -82 | 5 | TGGTAATTAAGTTACAA |
| Shewanella sp ANA-3 | Shewana3_1677 | -82 | 5 | TGGTAATTAAGTTACAA |
| Shewanella sp MR-4 | Shewmr4_1609 | -82 | 5 | TGGTAATTAAGTTACAA |
| Shewanella sp MR-7 | Shewmr7_1684 | -82 | 5 | TGGTAATTAAGTTACAA |
| Shewanella baltica OS155 | Sbal_2824 | -82 | 5 | TGGTAATTAAGTTACAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2724 | -90 | 5 | TGGTAATTTAGTTACAA |
| Shewanella amazonensis SB2B | Sama_1365 | -74 | 4.2 | CTGTAATTCAGTTACCA |
| Shewanella loihica PV-4 | Shew_2561 | -172 | 4.6 | TAGTAATTAACTTACCA |
| Shewanella pealeana ATCC 700345 | Spea_2794 | -127 | 4.6 | TAGTAATTAAGTTACCA |
| Shewanella halifaxensis HAW-EB4 | Shal_2899 | -134 | 4.6 | TAGTAATTAAGTTACCA |
| Shewanella piezotolerans WP3 | swp_3432 | -177 | 4.6 | TAGTAATTTAGTTACCA |
| Shewanella woodyi ATCC 51908 | Swoo_3220 | -239 | 4.6 | TAGTAATTAACTTACCA |
|
Position: -57
Score: 5.1 Sequence: TTGTAACAAAATTACTA
Locus tag: Sputw3181_2531
|
||||
| Sputw3181_2531 | -57 | 5.1 | TTGTAACAAAATTACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cdd | ||||
| Ortholog function: cytidine deaminase | ||||
| Shewanella oneidensis MR-1 | SO_2791 | -57 | 4.9 | CTGTAACAAAATTACTA |
| Shewanella putrefaciens CN-32 | Sputcn32_1568 | -57 | 5.1 | TTGTAACAAAATTACTA |
| Shewanella sp W3-18-1 | Sputw3181_2531 | -57 | 5.1 | TTGTAACAAAATTACTA |
| Shewanella sp ANA-3 | Shewana3_2573 | -57 | 4.4 | CCGTAACAAAATTACTA |
| Shewanella sp MR-4 | Shewmr4_2411 | -57 | 4.4 | CCGTAACAAAATTACTA |
| Shewanella sp MR-7 | Shewmr7_2481 | -57 | 4.9 | CTGTAACAAAATTACTA |
| Shewanella baltica OS155 | Sbal_1694 | -57 | 5.1 | TTGTAACAAAATTACTA |
| Shewanella denitrificans OS217 | Sden_2288 | -150 | 4.2 | ATGTAATCAAACTAGAG |
| Shewanella loihica PV-4 | Shew_1610 | -57 | 4.3 | TGGTAACTTAGTTACTA |
| Shewanella piezotolerans WP3 | swp_3037 | -57 | 4.3 | ATGTAATAAGCTTACTA |
|
Position: -59
Score: 4.4 Sequence: TGGTAGTTTAGTAACAA
Locus tag: Sputw3181_2860
|
||||
| Sputw3181_2860 | -59 | 4.4 | TGGTAGTTTAGTAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhB | ||||
| Ortholog function: alcohol dehydrogenase II | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1244 | -59 | 4.4 | TGGTAGTTTAGTAACAA |
| Shewanella sp W3-18-1 | Sputw3181_2860 | -59 | 4.4 | TGGTAGTTTAGTAACAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2798 | -253 | 4.2 | CGGTAATATTATTTGAA |
| -127 | 4 | TGGTAATAAAACAACCT | ||
| Shewanella loihica PV-4 | Shew_1166 | -168 | 4.8 | TTGTCATAAATTTACAA |
| Shewanella pealeana ATCC 700345 | Spea_1152 | -167 | 5 | ATGTCATAAAATTACAA |
| -61 | 4.2 | TGGTACTTTAATTACCA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1196 | -166 | 4.2 | ACGTCATAAAACTACAA |
| Shewanella piezotolerans WP3 | swp_1311 | -165 | 4.5 | ATGTCGTAAAATTACAG |
| -60 | 4.2 | TGGTACTTTAATTACCA | ||
| Shewanella sediminis HAW-EB3 | Ssed_1258 | -163 | 4.1 | TGGTCATAAATTTACAG |
|
Position: -282
Score: 4 Sequence: ATGTTTTTTAATTACGT
Locus tag: Sputw3181_2866
|
||||
| Sputw3181_2866 | -282 | 4 | ATGTTTTTTAATTACGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceB | ||||
| Ortholog function: Malate synthase (EC 2.3.3.9) | ||||
| Shewanella oneidensis MR-1 | SO_1483 | -351 | 4.7 | TGGTAATTTAATTACGT |
| Shewanella putrefaciens CN-32 | Sputcn32_1238 | -283 | 4 | ATGTTTTTTAATTACGT |
| Shewanella sp W3-18-1 | Sputw3181_2866 | -282 | 4 | ATGTTTTTTAATTACGT |
| Shewanella sp ANA-3 | Shewana3_2943 | -351 | 4.7 | TGGTAATTAAATTACGT |
| Shewanella sp MR-4 | Shewmr4_2767 | -351 | 4.7 | TGGTAATTAAATTACGT |
| Shewanella sp MR-7 | Shewmr7_2845 | -351 | 4.7 | TGGTAATTAAATTACGT |
| Shewanella baltica OS155 | Sbal_1316 | -359 | 4.7 | TGGTAATTTAATTACGT |
| Shewanella denitrificans OS217 | Sden_1245 | -303 | 4.5 | TTGTAATTTTAGTACGG |
| Shewanella frigidimarina NCIMB 400 | Sfri_1101 | -436 | 4.3 | TGGTTTTTATATTACAA |
| Shewanella amazonensis SB2B | Sama_2381 | -343 | 4.8 | GTGTAATTAAATTACCT |
| Shewanella pealeana ATCC 700345 | Spea_1290 | -394 | 4.1 | GTGAAATATAATAACGA |
| Shewanella halifaxensis HAW-EB4 | Shal_1352 | -436 | 4.3 | TTGAAATTTAATAACGG |
| Shewanella piezotolerans WP3 | swp_1433 | -391 | 4.7 | AGGTAATTAAATTACGA |
| Shewanella sediminis HAW-EB3 | Ssed_1414 | -337 | 4.2 | TCGTAATTAAAAAACAT |
| Shewanella woodyi ATCC 51908 | Swoo_1528 | -380 | 4.6 | ATCTAATTTAATTACGT |
|
Position: -73
Score: 5.5 Sequence: TTGTAATAAAACTACAA
Locus tag: Sputw3181_3114
|
||||
| Sputw3181_3114 | -73 | 5.5 | TTGTAATAAAACTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: phk | ||||
| Ortholog function: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) | ||||
| Shewanella oneidensis MR-1 | SO_3542 | -73 | 5.4 | TTGTAAGAAAATTACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1051 | -73 | 5.5 | TTGTAATAAAACTACAA |
| Shewanella sp W3-18-1 | Sputw3181_3114 | -73 | 5.5 | TTGTAATAAAACTACAA |
| Shewanella sp ANA-3 | Shewana3_3145 | -73 | 5.4 | TTGTAAGAAAATTACAA |
| Shewanella sp MR-4 | Shewmr4_2965 | -73 | 5.4 | TTGTAAGAAAATTACAA |
| Shewanella sp MR-7 | Shewmr7_3047 | -73 | 5.4 | TTGTAAGAAAATTACAA |
| Shewanella baltica OS155 | Sbal_1046 | -74 | 5.5 | TTGTAATAAAACTACAA |
| Shewanella denitrificans OS217 | Sden_2731 | -72 | 5.3 | TCGTAATTAAATTACAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2898 | -167 | 4.5 | TCGTTATTAAATTTCAA |
| -73 | 5.6 | TTGTAATTAAATTACAG | ||
| Shewanella amazonensis SB2B | Sama_0915 | -77 | 5.5 | TTGTAATAAATTTACAA |
| Shewanella loihica PV-4 | Shew_1091 | -75 | 5.8 | TTGTAATAAAATTACAA |
| Shewanella pealeana ATCC 700345 | Spea_1076 | -74 | 5.3 | TCGTAATAAAATTACAA |
| Shewanella halifaxensis HAW-EB4 | Shal_1124 | -74 | 5.8 | TTGTAATAAAATTACAA |
| Shewanella piezotolerans WP3 | swp_3738 | -137 | 4.6 | ATCTAGTTTTACTACAT |
| -74 | 5.8 | TTGTAATAAAATTACAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_1186 | -75 | 5.8 | TTGTAATAAAATTACAA |
| Shewanella woodyi ATCC 51908 | Swoo_1282 | -75 | 5.8 | TTGTAATAAAATTACAA |
|
Position: -103
Score: 5.3 Sequence: TTGTAATTTTTTTACAT
Locus tag: Sputw3181_3116
|
||||
| Sputw3181_3116 | -103 | 5.3 | TTGTAATTTTTTTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tal | ||||
| Ortholog function: transaldolase | ||||
| Shewanella oneidensis MR-1 | SO_3546 | -104 | 5.3 | TTGTAATTTTTTTACAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1049 | -103 | 5.3 | TTGTAATTTTTTTACAT |
| Shewanella sp W3-18-1 | Sputw3181_3116 | -103 | 5.3 | TTGTAATTTTTTTACAT |
| Shewanella sp ANA-3 | Shewana3_3147 | -104 | 5.3 | TTGTAATTTTTTTACAT |
| Shewanella sp MR-4 | Shewmr4_2967 | -104 | 5.3 | TTGTAATTTTTTTACAT |
| Shewanella sp MR-7 | Shewmr7_3049 | -104 | 5.3 | TTGTAATTTTTTTACAT |
| Shewanella baltica OS155 | Sbal_1044 | -103 | 5.3 | TTGTAATTTTTTTACAT |
| Shewanella denitrificans OS217 | Sden_2734 | -94 | 5 | TGGTAATTTATTTACAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2900 | -96 | 5 | TCGTAATTTTTTTACAA |
| Shewanella amazonensis SB2B | Sama_0913 | -105 | 4.8 | TTGTAATTTTTTTTCAT |
| Shewanella loihica PV-4 | Shew_1089 | -105 | 4.6 | CTGTAATTTTTTTTCAT |
| Shewanella pealeana ATCC 700345 | Spea_1074 | -160 | 4.3 | ACGTAGTTAGATTACAA |
| -109 | 4.4 | GTGTAATTTTTTTTCAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1122 | -108 | 4.4 | GTGTAATTTTTTTTCAT |
| Shewanella piezotolerans WP3 | swp_3741 | -157 | 4.2 | TGGTAGCAATATTACCA |
| -106 | 4.6 | CTGTAATTTTTTTTCAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1185 | -105 | 4.6 | CTGTAATTTTTTTTCAT |
| Shewanella woodyi ATCC 51908 | Swoo_1280 | -104 | 4.6 | CTGTAATTTTTTTTCAT |
|
Position: -176
Score: 5.3 Sequence: GTGTAATTTAATTACAT
Position: -124
Score: 5.5 Sequence: TTGTAATAAAACTACAA
Locus tag: Sputw3181_3220
|
||||
| Sputw3181_3220 | -176 | 5.3 | GTGTAATTTAATTACAT | |
| -124 | 5.5 | TTGTAATAAAACTACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1118 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_0956 | -176 | 5.3 | GTGTAATTTAATTACAT |
| -124 | 5.5 | TTGTAATAAAACTACAA | ||
| Shewanella sp W3-18-1 | Sputw3181_3220 | -176 | 5.3 | GTGTAATTTAATTACAT |
| -124 | 5.5 | TTGTAATAAAACTACAA | ||
| Shewanella baltica OS155 | Sbal_0942 | -176 | 5.3 | GTGTAATTTAATTACAT |
| -148 | 4.3 | AATTAAAAAAATTACAA | ||
| -124 | 5.5 | TTGTAATAAAACTACAA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_0964 | -168 | 4.7 | TTGTAATTAAATCACTT |
| -116 | 5.6 | TTGTAATTAAATTACAG | ||
| Shewanella loihica PV-4 | Shew_2850 | -240 | 5.2 | ATGTAGTAAAATTACAG |
| -188 | 5.4 | TTGTAATAAAACTACAT | ||
| Shewanella pealeana ATCC 700345 | Spea_3089 | -232 | 4.5 | TTGTTGTTAAATTACGT |
| -179 | 5.6 | TTGTAATAAAATTACAG | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3174 | -244 | 4.3 | TTGTAGTTGAATTACCT |
| -191 | 5.6 | TTGTAATAAAATTACAG | ||
| Shewanella sediminis HAW-EB3 | Ssed_3418 | -254 | 4.6 | GTGTTGTAAAATTACAG |
| -202 | 5.6 | TTGTAATAAAATTACAT | ||
| -37 | 5.1 | GAGTAATTTTATTACAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_3419 | -202 | 5.6 | TTGTAATAAAATTACAT |
| -38 | 5.1 | GAGTAATTTTATTACAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_3601 | -195 | 4.7 | TTGTAATAAACTTTCAG |
|
Position: -182
Score: 5 Sequence: TTGTTATAAAACTACAT
Locus tag: Sputw3181_3324
|
||||
| Sputw3181_3324 | -182 | 5 | TTGTTATAAAACTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nqrA | ||||
| Ortholog function: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit | ||||
| Shewanella oneidensis MR-1 | SO_0902 | -181 | 5 | TTGTTATAAAACTACAT |
| Shewanella putrefaciens CN-32 | Sputcn32_0849 | -182 | 5 | TTGTTATAAAACTACAT |
| Shewanella sp W3-18-1 | Sputw3181_3324 | -182 | 5 | TTGTTATAAAACTACAT |
| Shewanella sp ANA-3 | Shewana3_3378 | -181 | 5 | TTGTTATAAAACTACAT |
| Shewanella sp MR-4 | Shewmr4_0748 | -181 | 5 | TTGTTATAAAACTACAT |
| Shewanella sp MR-7 | Shewmr7_3272 | -181 | 5 | TTGTTATAAAACTACAT |
| Shewanella baltica OS155 | Sbal_0754 | -182 | 5 | TTGTTATAAAACTACAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3211 | -67 | 4 | TAGTTACTATATTAGTA |
| Shewanella amazonensis SB2B | Sama_2981 | -180 | 4.6 | ATGTAACTTTATGACAA |
| -109 | 4.9 | TTGTAGTTAAATTTCAT | ||
| Shewanella loihica PV-4 | Shew_2709 | -171 | 5 | TTGTTATAAAACTACAT |
| -99 | 4.6 | CTGTAGCTAAGTTACAA | ||
| Shewanella pealeana ATCC 700345 | Spea_1573 | -108 | 4.7 | TTGTAGGTAACTTACAA |
| Shewanella halifaxensis HAW-EB4 | Shal_1644 | -108 | 4.4 | TTGTTGGTAACTTACAA |
| Shewanella piezotolerans WP3 | swp_2889 | -178 | 4.5 | TCGTTGTAAAATTACAT |
| -96 | 4.4 | TTGTATGTAAGTTACAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_3582 | -178 | 5 | TTGTTATAAAACTACAT |
| -106 | 4.6 | ATGTTACTAAGTTACAA | ||
|
Position: -78
Score: 4.8 Sequence: ATGTAACTTTATTACCA
Locus tag: Sputw3181_3885
|
||||
| Sputw3181_3885 | -78 | 4.8 | ATGTAACTTTATTACCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mcp1 | ||||
| Ortholog function: methyl-accepting chemotaxis protein | ||||
| Shewanella oneidensis MR-1 | SO_4557 | -78 | 4.7 | CTGTAAATTTTTTACAG |
| Shewanella putrefaciens CN-32 | Sputcn32_0323 | -78 | 4.8 | ATGTAACTTTATTACCA |
| Shewanella sp W3-18-1 | Sputw3181_3885 | -78 | 4.8 | ATGTAACTTTATTACCA |
| Shewanella sp ANA-3 | Shewana3_3950 | -77 | 5.1 | CTGTAAATTTATTACAT |
| Shewanella sp MR-7 | Shewmr7_3825 | -74 | 4.2 | CTGTAAATTTATGACAC |
| Shewanella baltica OS155 | Sbal_0193 | -23 | 4.4 | TTGTTAATAAATTAGAC |
| Shewanella pealeana ATCC 700345 | Spea_1629 | -160 | 5.3 | ATGTAATTTATTTACAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2632 | -164 | 4.9 | GTGTAATTTATTTACAT |