Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Dnr regulog to Shewanella amazonensis SB2B

Reference regulog properties
Source regulog: Dnr - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Denitrification
Effector: Nitric oxide
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella amazonensis SB2B
Orthologous TF(s) Sama_2685
Regulated genes 1
Built upon 5 sites [see more]
Predicted regulatory interactions in Shewanella amazonensis SB2B
Locus tag Position Score Sequence
Position: -133
Score: 5.3
Locus tag: Sama_2681
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirK
Ortholog function: Copper-containing nitrite reductase (EC
Shewanella denitrificans OS217 Sden_3482 -121 6.1 ACTTGATCTAGGTCAATT
Shewanella amazonensis SB2B Sama_2681 -133 5.3 AGTTGACTTCCATCAATT
Shewanella loihica PV-4 Shew_3335 -131 5.8 ACTTGACCAAAGTCAATT