Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of SO3494 regulog to Shewanella putrefaciens 200

Reference regulog properties
Source regulog: SO3494 - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Multidrug resistance
Effector:
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella putrefaciens 200
Orthologous TF(s) Sput200DRAFT_3497
Regulated genes 2
Built upon 31 sites [see more]
Predicted regulatory interactions in Shewanella putrefaciens 200
Locus tag Position Score Sequence
Position: -170
Score: 5.9
Sequence: TTAATACCAGTCGGTACATA
Position: -97
Score: 6
Sequence: TTTTTACCAGTCGGTATTTA
Locus tag: Sput200DRAFT_3496
Sput200DRAFT_3496 -170 5.9 TTAATACCAGTCGGTACATA
-97 6 TTTTTACCAGTCGGTATTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mexE
Ortholog function: RND multidrug efflux membrane fusion protein MexE
Shewanella oneidensis MR-1 SO_3493 99 6.2 TTTtTACCAATCGGTATttA
Shewanella putrefaciens CN-32 Sputcn32_2792 -170 5.9 TTAATACCAGTCGGTACATA
-97 6 TTTTTACCAGTCGGTATTTA
Shewanella sp W3-18-1 Sputw3181_1220 -170 5.9 TTAATACCAGTCGGTACATA
-97 6 TTTTTACCAGTCGGTATTTA
Shewanella sp ANA-3 Shewana3_1077 -166 5.2 TAAATACTCATCGGTACAAA
-94 6 TTTTTACCAGTCGGTATTTA
Shewanella sp MR-4 Shewmr4_1073 -166 5.2 TAAATACTTATCGGTACAAA
-93 6 TTTTTACCAGTCGGTATTTA
Shewanella sp MR-7 Shewmr7_1145 -166 5.2 TAAATACTTATCGGTACAAA
-93 6.2 TTTTTACCAATCGGTATTTA
Shewanella baltica OS155 Sbal_3182 -145 6.2 TTAATACCAATCGGTACATA
-72 6 TTTTTACCAGTCGGTATTTA
Shewanella denitrificans OS217 Sden_3079 -119 5.8 AAATTACCAATCGGTACAAA
-70 5.2 ATCATACCGACCGGTACAAA
Shewanella frigidimarina NCIMB 400 Sfri_3985 -169 6.3 TTAATACCAATCGGTACAAA
-97 6.3 TTTGTACCGATTGGTATAAA
Position: -339
Score: 6
Sequence: TAAATACCGACTGGTAAAAA
Position: -266
Score: 5.9
Sequence: TATGTACCGACTGGTATTAA
Locus tag: Sput200DRAFT_3497
Sput200DRAFT_3497 -339 6 TAAATACCGACTGGTAAAAA
-266 5.9 TATGTACCGACTGGTATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3494
Ortholog function: Transcriptional regulator, TetR family
Shewanella oneidensis MR-1 SO_3494 -273 6.2 TAAATACCGATTGGTAAAAA
Shewanella putrefaciens CN-32 Sputcn32_2793 -339 6 TAAATACCGACTGGTAAAAA
-266 5.9 TATGTACCGACTGGTATTAA
Shewanella sp W3-18-1 Sputw3181_1219 -339 6 TAAATACCGACTGGTAAAAA
-266 5.9 TATGTACCGACTGGTATTAA
Shewanella sp ANA-3 Shewana3_1076 -285 6 TAAATACCGACTGGTAAAAA
-213 5.2 TTTGTACCGATGAGTATTTA
Shewanella sp MR-4 Shewmr4_1072 -289 6 TAAATACCGACTGGTAAAAA
-216 5.2 TTTGTACCGATAAGTATTTA
Shewanella sp MR-7 Shewmr7_1144 -288 6.2 TAAATACCGATTGGTAAAAA
-215 5.2 TTTGTACCGATAAGTATTTA
Shewanella baltica OS155 Sbal_3183 -502 6.2 TATGTACCGATTGGTATTAA
Shewanella frigidimarina NCIMB 400 Sfri_3984 -334 6.3 TTTATACCAATCGGTACAAA
-262 6.3 TTTGTACCGATTGGTATTAA
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