Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of ArgR regulog to Marinobacter sp. ELB17

Reference regulog properties
Source regulog: ArgR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Marinobacter sp. ELB17
Orthologous TF(s) No orthologous TFs found
Regulated genes 3
Built upon 502 sites [see more]
Predicted regulatory interactions in Marinobacter sp. ELB17
Locus tag Position Score Sequence
Position: -45
Score: 3.8
Sequence: ACTGTATGAAAAAACAGT
Locus tag: MELB17_03505
MELB17_03505 -45 3.8 ACTGTATGAAAAAACAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: recN
Ortholog function: DNA repair protein RecN
Shewanella oneidensis MR-1 SO_3462 -71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella putrefaciens CN-32 Sputcn32_2771 -71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp W3-18-1 Sputw3181_1241 -71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp ANA-3 Shewana3_1104 -71 5.1 ACTGTATATAAATTCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp MR-4 Shewmr4_1104 -71 5.1 ACTGTATATAAATTCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp MR-7 Shewmr7_1170 -71 5.1 ACTGTATATAAATTCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella baltica OS155 Sbal_3153 -137 3.6 CATGCATAATCAGTTAAT
-71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella denitrificans OS217 Sden_1151 -95 3.7 ACTCAAAATTAACTCAGC
-70 3.9 ACTGTATAAAAAACCAGT
-48 3.7 ACTGTTTATCAATACAGT
Shewanella frigidimarina NCIMB 400 Sfri_1043 -112 3.6 GATGATAAAATAGTCAAC
-71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella amazonensis SB2B Sama_1026 -72 3.8 ACTGTACAAAAAATCAGT
-50 3.7 ACTGTGTATCAATACAGT
Shewanella loihica PV-4 Shew_1196 -61 5.1 ACTGTATAAAAATTCAGT
Shewanella sediminis HAW-EB3 Ssed_1281 -61 4.6 ACTGTATATAAAATCAGT
Position: -48
Score: 4.4
Sequence: AATGGCTAAAAATGCAAT
Locus tag: MELB17_20326
MELB17_20326 -48 4.4 AATGGCTAAAAATGCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Shewanella oneidensis MR-1 SO_0275 -327 3.6 ATTGAAATATTAAGTAGT
-249 4 TAAAAATATATATTCACA
-127 3.7 AGTGAATAAAATAACAAG
Shewanella putrefaciens CN-32 Sputcn32_3717 -192 4.2 TATGAAAATAAATTAAAA
-57 3.8 AGTGAATAAAATAACAAC
Shewanella sp W3-18-1 Sputw3181_3860 -193 4.2 TATGAAAATAAATTAAAA
-180 4 TAAAAATATATATTCACA
-57 4 AGTGAATAAAATAACAAT
Shewanella sp ANA-3 Shewana3_3905 -357 3.7 ACTGATTTTTCAGTCTTT
-327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella sp MR-4 Shewmr4_3709 -327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella sp MR-7 Shewmr7_0236 -327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella baltica OS155 Sbal_4124 -471 4.2 ATTCAATATAAATGCGAA
-252 4 TAAAAATATATATTCACA
-130 3.8 AGTGAATAAAATAACAAC
Shewanella denitrificans OS217 Sden_0250 -235 4.3 AATAAATATGTATTCACA
-214 3.7 ATTGCATAACAATTTGAT
-145 4.3 ATCGAATATAAAAGCACA
Shewanella amazonensis SB2B Sama_0256 -241 3.7 AATAGATATTCATGCATA
Shewanella loihica PV-4 Shew_0202 -249 3.7 TAAAAATATCTATTCAAT
-228 3.5 ATTGCATAATTAGTTTGT
Shewanella pealeana ATCC 700345 Spea_0227 -266 3.8 CCCAAATATATATTCAAA
Shewanella halifaxensis HAW-EB4 Shal_4093 -267 4.5 CCTAAATATATATTCAAA
Shewanella piezotolerans WP3 swp_2055 -266 4.5 CCTAAATATATATTCAAA
Shewanella sediminis HAW-EB3 Ssed_4276 -256 4 GTAAAATATATATTCAAA
-235 3.5 ATTGCATAATTAGTTTGT
Shewanella woodyi ATCC 51908 Swoo_0329 -423 3.5 TTTGCATTCAAAACCAAG
-263 4 GTAAAATATATATTCAAA
Position: -5
Score: 4
Sequence: AATAAATGTTGATGCAAT
Locus tag: MELB17_11624
MELB17_11624 -5 4 AATAAATGTTGATGCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0762
Ortholog function: Isochorismate hydrolase (EC 3.3.2.1)
Shewanella oneidensis MR-1 SO_0762 -195 4.6 TGTGCCTAAAAATGCACC
Shewanella sp ANA-3 Shewana3_3533 -234 3.9 ATTGATTTTAAATAAATA
-195 4.1 ACCGATTAAAAATGCACC
Shewanella sp MR-4 Shewmr4_3363 -248 3.8 CCAGAATTTTAATTTATT
-194 4 TTCGATTAAAAATGCACC
Shewanella sp MR-7 Shewmr7_0590 -265 3.8 CCAGAATTTTAATTTATT
-211 4 TTCGATTAAAAATGCACC
Shewanella frigidimarina NCIMB 400 Sfri_0893 -114 4.4 TCTGAGTGAACATTCATA
Shewanella loihica PV-4 Shew_0845 -139 5 GCTGCATATAAATGCACC
Shewanella pealeana ATCC 700345 Spea_0832 -152 4.9 CGTGCATATAAATGCACC
Shewanella halifaxensis HAW-EB4 Shal_0887 -155 4.4 AACGCATAAAAATGCACC
Shewanella piezotolerans WP3 swp_3957 -151 4.5 TATAAATATAAATGCACC
Shewanella woodyi ATCC 51908 Swoo_0978 -125 4.2 TGCGCATAAAAACTCAAT
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