Propagation of Fnr regulog to Colwellia psychrerythraea 34H
| Source regulog: | Fnr - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | |
| Biological process: | Anaerobic metabolism |
| Effector: | Oxygen |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Colwellia psychrerythraea 34H |
| Orthologous TF(s) | CPS_1987 |
| Regulated genes | 6 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -325
Score: 5 Sequence: TTGACCTAGATCAA
Locus tag: CPS_0236
|
||||
| CPS_0236 | -325 | 5 | TTGACCTAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: coxB | ||||
| Ortholog function: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1) | ||||
| Shewanella amazonensis SB2B | Sama_3483 | -314 | 4.9 | GTGATCTTGATCAA |
| Shewanella baltica OS155 | Sbal_0154 | -313 | 4.9 | GTGATCTTGATCAA |
| Shewanella denitrificans OS217 | Sden_3517 | -312 | 4.9 | GTGATCTTGATCAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0258 | -317 | 4.9 | GTGATCTTGATCAA |
| -209 | 4.8 | ATGATCCAAATCAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0258 | -372 | 4.9 | GTGATCTTGATCAA |
| Shewanella loihica PV-4 | Shew_0125 | -317 | 4.9 | GTGATCTTGATCAA |
| Shewanella oneidensis MR-1 | SO4606 | -313 | 4.9 | GTGATCTTGATCAA |
| Shewanella pealeana ATCC 700345 | Spea_3999 | -349 | 4.9 | GTGATCTTGATCAA |
| -246 | 4.2 | TAGATCCTGATCAA | ||
| Shewanella piezotolerans WP3 | swp_4823 | -366 | 4.9 | GTGATCTTGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3782 | -305 | 4.9 | GTGATCTTGATCAA |
| Shewanella sediminis HAW-EB3 | Ssed_0198 | -339 | 5.2 | TTGATCTTGATCAA |
| Shewanella sp ANA-3 | Shewana3_3991 | -314 | 4.9 | GTGATCTTGATCAA |
| Shewanella sp MR-4 | Shewmr4_3791 | -314 | 4.9 | GTGATCTTGATCAA |
| Shewanella sp MR-7 | Shewmr7_3864 | -313 | 4.9 | GTGATCTTGATCAA |
| Shewanella sp W3-18-1 | Sputw3181_0133 | -305 | 4.9 | GTGATCTTGATCAA |
| Shewanella woodyi ATCC 51908 | Swoo_0178 | -337 | 4.9 | GTGATCTTGATCAA |
|
Position: -87
Score: 5.1 Sequence: CTGATCTAGATCAA
Locus tag: CPS_1060
|
||||
| CPS_1060 | -87 | 5.1 | CTGATCTAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napE2 | ||||
| Ortholog function: Periplasmic nitrate reductase component NapE | ||||
| Shewanella amazonensis SB2B | Sama_1620 | -133 | 5.4 | ATGATCTGGATCAA |
| Shewanella baltica OS155 | Sbal_1908 | -171 | 5.4 | ATGATCTGGATCAA |
| Shewanella denitrificans OS217 | Sden_1495 | -69 | 5.1 | CTGATCTAGATCAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2555 | -146 | 5.3 | ATGATCTAGATCAT |
| Shewanella loihica PV-4 | Shew_1768 | -181 | 5.1 | ATGATCCAGATCAA |
| Shewanella pealeana ATCC 700345 | Spea_2429 | -191 | 5.4 | ATGATCTGGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1901 | -172 | 5.4 | ATGATCTGGATCAA |
| Shewanella sp ANA-3 | Shewana3_1898 | -164 | 5.4 | ATGATCTGGATCAA |
| Shewanella sp MR-4 | Shewmr4_1840 | -164 | 5.4 | ATGATCTGGATCAA |
| Shewanella sp MR-7 | Shewmr7_2137 | -164 | 5.4 | ATGATCTGGATCAA |
| Shewanella sp W3-18-1 | Sputw3181_2107 | -172 | 5.4 | ATGATCTGGATCAA |
|
Position: -78
Score: 4.2 Sequence: TTGATTTAAAACAA
Locus tag: CPS_1986
|
||||
| CPS_1986 | -78 | 4.2 | TTGATTTAAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uspE | ||||
| Ortholog function: Universal stress protein E | ||||
| Shewanella amazonensis SB2B | Sama_1800 | -74 | 4.6 | TTGATCTAAAACAA |
| Shewanella baltica OS155 | Sbal_2210 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella baltica OS155 | Sbal_4496 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella denitrificans OS217 | Sden_1842 | -69 | 4.2 | TTGATATAGCTCAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_2019 | -87 | 4.6 | ATGATCTATCTCAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2206 | -73 | 4.6 | TTGATCTAAAACAA |
| Shewanella loihica PV-4 | Shew_1994 | -72 | 4.6 | TTGATCTAAAACAA |
| Shewanella oneidensis MR-1 | SO2355 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella pealeana ATCC 700345 | Spea_2223 | -74 | 4.6 | TTGATCTAAAACAA |
| Shewanella piezotolerans WP3 | swp_2581 | -71 | 4.6 | TTGATCTAAAACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1950 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella sediminis HAW-EB3 | Ssed_2220 | -71 | 4.6 | TTGATCTGAAACAA |
| Shewanella sp ANA-3 | Shewana3_2116 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella sp MR-4 | Shewmr4_2015 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella sp MR-7 | Shewmr7_1960 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella sp W3-18-1 | Sputw3181_2055 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella woodyi ATCC 51908 | Swoo_2416 | -70 | 4.9 | TTGATCTAAAGCAA |
|
Position: -231
Score: 5.3 Sequence: TTGATCTACATCAA
Locus tag: CPS_1995
|
||||
| CPS_1995 | -231 | 5.3 | TTGATCTACATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccoN | ||||
| Ortholog function: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1) | ||||
| Shewanella amazonensis SB2B | Sama_1791 | -218 | 5.3 | TTGATCCAGATCAA |
| Shewanella baltica OS155 | Sbal_2201 | -212 | 5.6 | TTGATCTAGATCAA |
| -169 | 4.5 | TTGATATTGCTCAA | ||
| Shewanella baltica OS155 | Sbal_4487 | -212 | 5.6 | TTGATCTAGATCAA |
| -169 | 4.5 | TTGATATTGCTCAA | ||
| Shewanella denitrificans OS217 | Sden_1851 | -220 | 5.3 | TTGATCCAGATCAA |
| -178 | 5.1 | TTGATGTAGCTCAA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2010 | -224 | 5.6 | TTGATCTAGATCAA |
| -182 | 4.3 | TTGACTTAGCTCAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2197 | -217 | 5.6 | TTGATCTAGATCAA |
| -174 | 4.9 | TTGATATAGCTCAA | ||
| Shewanella loihica PV-4 | Shew_1985 | -217 | 5.6 | TTGATCTGGATCAA |
| -174 | 4.5 | TTGATATTGCTCAA | ||
| Shewanella oneidensis MR-1 | SO2364 | -212 | 5.6 | TTGATCTAGATCAA |
| -169 | 4.2 | TTGACATGGCTCAA | ||
| -106 | 4.3 | TTGACATAGCTCAA | ||
| Shewanella pealeana ATCC 700345 | Spea_2214 | -215 | 5.6 | TTGATCTAGATCAA |
| -172 | 4.9 | TTGATATAGCTCAA | ||
| Shewanella piezotolerans WP3 | swp_2572 | -217 | 5.6 | TTGATCTAGATCAA |
| -174 | 4.3 | TTGACATAGCTCAA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1959 | -210 | 5.6 | TTGATCTAGATCAA |
| -167 | 3.9 | TTGACATTGCTCAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_2211 | -216 | 5.6 | TTGATCTAGATCAA |
| -173 | 4.3 | TTGACATAGCTCAA | ||
| Shewanella sp ANA-3 | Shewana3_2107 | -210 | 5.6 | TTGATCTAGATCAA |
| -167 | 4.2 | TTGACATGGCTCAA | ||
| Shewanella sp MR-4 | Shewmr4_2006 | -210 | 5.6 | TTGATCTAGATCAA |
| -167 | 4.2 | TTGACATGGCTCAA | ||
| Shewanella sp MR-7 | Shewmr7_1969 | -210 | 5.6 | TTGATCTAGATCAA |
| -167 | 4.2 | TTGACATGGCTCAA | ||
| Shewanella sp W3-18-1 | Sputw3181_2046 | -210 | 5.6 | TTGATCTAGATCAA |
| -167 | 3.9 | TTGACATTGCTCAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_2425 | -216 | 5.6 | TTGATCTAGATCAA |
| -173 | 4.3 | TTGACATAGCTCAA | ||
|
Position: -206
Score: 3.9 Sequence: TTGCTTTACGTCAA
Locus tag: CPS_3686
|
||||
| CPS_3686 | -206 | 3.9 | TTGCTTTACGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: etfD | ||||
| Ortholog function: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) | ||||
| Shewanella amazonensis SB2B | Sama_3523 | -184 | 4.6 | TTGGTCTGGATCAT |
| Shewanella loihica PV-4 | Shew_0086 | -175 | 3.9 | TTGTTTAAGATCAA |
| Shewanella oneidensis MR-1 | SO4453 | -198 | 4.3 | TTGATCAGGTTCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0388 | -198 | 4.2 | TTGGCCTAGATCAA |
| Shewanella sediminis HAW-EB3 | Ssed_4403 | -177 | 4.6 | TTGCTCAAGATCAA |
| Shewanella sp ANA-3 | Shewana3_0273 | -202 | 4.3 | TTGATCCGCTTCAA |
| Shewanella sp MR-4 | Shewmr4_0272 | -202 | 4.3 | TTGATCCGCTTCAA |
| Shewanella sp MR-7 | Shewmr7_3749 | -202 | 4.3 | TTGATCCGCTTCAA |
| Shewanella sp W3-18-1 | Sputw3181_0242 | -198 | 4.2 | TTGGCCTAGATCAA |
| Shewanella woodyi ATCC 51908 | Swoo_4794 | -162 | 4.5 | TTGCTCAGGATCAA |
|
Position: -261
Score: 3.8 Sequence: TTGATTACAATCAA
Locus tag: CPS_4633
|
||||
| CPS_4633 | -261 | 3.8 | TTGATTACAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moaA | ||||
| Ortholog function: Molybdenum cofactor biosynthesis protein MoaA | ||||
| Shewanella amazonensis SB2B | Sama_3524 | -145 | 4.6 | ATGATCCAGACCAA |
| Shewanella baltica OS155 | Sbal_0284 | -152 | 3.9 | GTGATCTAGGTTAA |
| Shewanella loihica PV-4 | Shew_0087 | -154 | 4.2 | TTGATCTTAAACAA |
| Shewanella oneidensis MR-1 | SO4452 | -185 | 4.5 | TTGAACCTGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0389 | -152 | 4.5 | TTGATCTAGGCCAA |
| Shewanella sediminis HAW-EB3 | Ssed_4402 | -186 | 4.9 | TTGATCTTGAGCAA |
| Shewanella sp ANA-3 | Shewana3_0274 | -152 | 4.7 | TTGAAGCGGATCAA |
| Shewanella sp MR-4 | Shewmr4_0273 | -152 | 4.7 | TTGAAGCGGATCAA |
| Shewanella sp MR-7 | Shewmr7_3748 | -152 | 4.7 | TTGAAGCGGATCAA |
| Shewanella sp W3-18-1 | Sputw3181_0243 | -152 | 4.5 | TTGATCTAGGCCAA |
| Shewanella woodyi ATCC 51908 | Swoo_4793 | -187 | 4.6 | TTGATCCTGAGCAA |