Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Colwellia psychrerythraea 34H

Reference regulog properties
Source regulog: Fnr - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode:
Biological process: Anaerobic metabolism
Effector: Oxygen
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Colwellia psychrerythraea 34H
Orthologous TF(s) CPS_1987
Regulated genes 6
Built upon 541 sites [see more]
Predicted regulatory interactions in Colwellia psychrerythraea 34H
Locus tag Position Score Sequence
Position: -325
Score: 5
Sequence: TTGACCTAGATCAA
Locus tag: CPS_0236
CPS_0236 -325 5 TTGACCTAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: coxB
Ortholog function: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
Shewanella amazonensis SB2B Sama_3483 -314 4.9 GTGATCTTGATCAA
Shewanella baltica OS155 Sbal_0154 -313 4.9 GTGATCTTGATCAA
Shewanella denitrificans OS217 Sden_3517 -312 4.9 GTGATCTTGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_0258 -317 4.9 GTGATCTTGATCAA
-209 4.8 ATGATCCAAATCAA
Shewanella halifaxensis HAW-EB4 Shal_0258 -372 4.9 GTGATCTTGATCAA
Shewanella loihica PV-4 Shew_0125 -317 4.9 GTGATCTTGATCAA
Shewanella oneidensis MR-1 SO4606 -313 4.9 GTGATCTTGATCAA
Shewanella pealeana ATCC 700345 Spea_3999 -349 4.9 GTGATCTTGATCAA
-246 4.2 TAGATCCTGATCAA
Shewanella piezotolerans WP3 swp_4823 -366 4.9 GTGATCTTGATCAA
Shewanella putrefaciens CN-32 Sputcn32_3782 -305 4.9 GTGATCTTGATCAA
Shewanella sediminis HAW-EB3 Ssed_0198 -339 5.2 TTGATCTTGATCAA
Shewanella sp ANA-3 Shewana3_3991 -314 4.9 GTGATCTTGATCAA
Shewanella sp MR-4 Shewmr4_3791 -314 4.9 GTGATCTTGATCAA
Shewanella sp MR-7 Shewmr7_3864 -313 4.9 GTGATCTTGATCAA
Shewanella sp W3-18-1 Sputw3181_0133 -305 4.9 GTGATCTTGATCAA
Shewanella woodyi ATCC 51908 Swoo_0178 -337 4.9 GTGATCTTGATCAA
Position: -87
Score: 5.1
Sequence: CTGATCTAGATCAA
Locus tag: CPS_1060
CPS_1060 -87 5.1 CTGATCTAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napE2
Ortholog function: Periplasmic nitrate reductase component NapE
Shewanella amazonensis SB2B Sama_1620 -133 5.4 ATGATCTGGATCAA
Shewanella baltica OS155 Sbal_1908 -171 5.4 ATGATCTGGATCAA
Shewanella denitrificans OS217 Sden_1495 -69 5.1 CTGATCTAGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_2555 -146 5.3 ATGATCTAGATCAT
Shewanella loihica PV-4 Shew_1768 -181 5.1 ATGATCCAGATCAA
Shewanella pealeana ATCC 700345 Spea_2429 -191 5.4 ATGATCTGGATCAA
Shewanella putrefaciens CN-32 Sputcn32_1901 -172 5.4 ATGATCTGGATCAA
Shewanella sp ANA-3 Shewana3_1898 -164 5.4 ATGATCTGGATCAA
Shewanella sp MR-4 Shewmr4_1840 -164 5.4 ATGATCTGGATCAA
Shewanella sp MR-7 Shewmr7_2137 -164 5.4 ATGATCTGGATCAA
Shewanella sp W3-18-1 Sputw3181_2107 -172 5.4 ATGATCTGGATCAA
Position: -78
Score: 4.2
Sequence: TTGATTTAAAACAA
Locus tag: CPS_1986
CPS_1986 -78 4.2 TTGATTTAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uspE
Ortholog function: Universal stress protein E
Shewanella amazonensis SB2B Sama_1800 -74 4.6 TTGATCTAAAACAA
Shewanella baltica OS155 Sbal_2210 -72 4.9 TTGATCTAGAACAA
Shewanella baltica OS155 Sbal_4496 -72 4.9 TTGATCTAGAACAA
Shewanella denitrificans OS217 Sden_1842 -69 4.2 TTGATATAGCTCAC
Shewanella frigidimarina NCIMB 400 Sfri_2019 -87 4.6 ATGATCTATCTCAA
Shewanella halifaxensis HAW-EB4 Shal_2206 -73 4.6 TTGATCTAAAACAA
Shewanella loihica PV-4 Shew_1994 -72 4.6 TTGATCTAAAACAA
Shewanella oneidensis MR-1 SO2355 -72 4.9 TTGATCTAGAACAA
Shewanella pealeana ATCC 700345 Spea_2223 -74 4.6 TTGATCTAAAACAA
Shewanella piezotolerans WP3 swp_2581 -71 4.6 TTGATCTAAAACAA
Shewanella putrefaciens CN-32 Sputcn32_1950 -72 4.9 TTGATCTAGAACAA
Shewanella sediminis HAW-EB3 Ssed_2220 -71 4.6 TTGATCTGAAACAA
Shewanella sp ANA-3 Shewana3_2116 -72 4.9 TTGATCTAGAACAA
Shewanella sp MR-4 Shewmr4_2015 -72 4.9 TTGATCTAGAACAA
Shewanella sp MR-7 Shewmr7_1960 -72 4.9 TTGATCTAGAACAA
Shewanella sp W3-18-1 Sputw3181_2055 -72 4.9 TTGATCTAGAACAA
Shewanella woodyi ATCC 51908 Swoo_2416 -70 4.9 TTGATCTAAAGCAA
Position: -231
Score: 5.3
Sequence: TTGATCTACATCAA
Locus tag: CPS_1995
CPS_1995 -231 5.3 TTGATCTACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccoN
Ortholog function: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Shewanella amazonensis SB2B Sama_1791 -218 5.3 TTGATCCAGATCAA
Shewanella baltica OS155 Sbal_2201 -212 5.6 TTGATCTAGATCAA
-169 4.5 TTGATATTGCTCAA
Shewanella baltica OS155 Sbal_4487 -212 5.6 TTGATCTAGATCAA
-169 4.5 TTGATATTGCTCAA
Shewanella denitrificans OS217 Sden_1851 -220 5.3 TTGATCCAGATCAA
-178 5.1 TTGATGTAGCTCAA
Shewanella frigidimarina NCIMB 400 Sfri_2010 -224 5.6 TTGATCTAGATCAA
-182 4.3 TTGACTTAGCTCAA
Shewanella halifaxensis HAW-EB4 Shal_2197 -217 5.6 TTGATCTAGATCAA
-174 4.9 TTGATATAGCTCAA
Shewanella loihica PV-4 Shew_1985 -217 5.6 TTGATCTGGATCAA
-174 4.5 TTGATATTGCTCAA
Shewanella oneidensis MR-1 SO2364 -212 5.6 TTGATCTAGATCAA
-169 4.2 TTGACATGGCTCAA
-106 4.3 TTGACATAGCTCAA
Shewanella pealeana ATCC 700345 Spea_2214 -215 5.6 TTGATCTAGATCAA
-172 4.9 TTGATATAGCTCAA
Shewanella piezotolerans WP3 swp_2572 -217 5.6 TTGATCTAGATCAA
-174 4.3 TTGACATAGCTCAA
Shewanella putrefaciens CN-32 Sputcn32_1959 -210 5.6 TTGATCTAGATCAA
-167 3.9 TTGACATTGCTCAA
Shewanella sediminis HAW-EB3 Ssed_2211 -216 5.6 TTGATCTAGATCAA
-173 4.3 TTGACATAGCTCAA
Shewanella sp ANA-3 Shewana3_2107 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp MR-4 Shewmr4_2006 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp MR-7 Shewmr7_1969 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp W3-18-1 Sputw3181_2046 -210 5.6 TTGATCTAGATCAA
-167 3.9 TTGACATTGCTCAA
Shewanella woodyi ATCC 51908 Swoo_2425 -216 5.6 TTGATCTAGATCAA
-173 4.3 TTGACATAGCTCAA
Position: -206
Score: 3.9
Sequence: TTGCTTTACGTCAA
Locus tag: CPS_3686
CPS_3686 -206 3.9 TTGCTTTACGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: etfD
Ortholog function: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Shewanella amazonensis SB2B Sama_3523 -184 4.6 TTGGTCTGGATCAT
Shewanella loihica PV-4 Shew_0086 -175 3.9 TTGTTTAAGATCAA
Shewanella oneidensis MR-1 SO4453 -198 4.3 TTGATCAGGTTCAA
Shewanella putrefaciens CN-32 Sputcn32_0388 -198 4.2 TTGGCCTAGATCAA
Shewanella sediminis HAW-EB3 Ssed_4403 -177 4.6 TTGCTCAAGATCAA
Shewanella sp ANA-3 Shewana3_0273 -202 4.3 TTGATCCGCTTCAA
Shewanella sp MR-4 Shewmr4_0272 -202 4.3 TTGATCCGCTTCAA
Shewanella sp MR-7 Shewmr7_3749 -202 4.3 TTGATCCGCTTCAA
Shewanella sp W3-18-1 Sputw3181_0242 -198 4.2 TTGGCCTAGATCAA
Shewanella woodyi ATCC 51908 Swoo_4794 -162 4.5 TTGCTCAGGATCAA
Position: -261
Score: 3.8
Sequence: TTGATTACAATCAA
Locus tag: CPS_4633
CPS_4633 -261 3.8 TTGATTACAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaA
Ortholog function: Molybdenum cofactor biosynthesis protein MoaA
Shewanella amazonensis SB2B Sama_3524 -145 4.6 ATGATCCAGACCAA
Shewanella baltica OS155 Sbal_0284 -152 3.9 GTGATCTAGGTTAA
Shewanella loihica PV-4 Shew_0087 -154 4.2 TTGATCTTAAACAA
Shewanella oneidensis MR-1 SO4452 -185 4.5 TTGAACCTGATCAA
Shewanella putrefaciens CN-32 Sputcn32_0389 -152 4.5 TTGATCTAGGCCAA
Shewanella sediminis HAW-EB3 Ssed_4402 -186 4.9 TTGATCTTGAGCAA
Shewanella sp ANA-3 Shewana3_0274 -152 4.7 TTGAAGCGGATCAA
Shewanella sp MR-4 Shewmr4_0273 -152 4.7 TTGAAGCGGATCAA
Shewanella sp MR-7 Shewmr7_3748 -152 4.7 TTGAAGCGGATCAA
Shewanella sp W3-18-1 Sputw3181_0243 -152 4.5 TTGATCTAGGCCAA
Shewanella woodyi ATCC 51908 Swoo_4793 -187 4.6 TTGATCCTGAGCAA
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