Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of PsrA regulog to Colwellia psychrerythraea 34H

Reference regulog properties
Source regulog: PsrA - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid degradation
Effector: Oleate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Colwellia psychrerythraea 34H
Orthologous TF(s) CPS_1586
Regulated genes 4
Built upon 295 sites [see more]
Predicted regulatory interactions in Colwellia psychrerythraea 34H
Locus tag Position Score Sequence
Position: -163
Score: 5.6
Sequence: TTTAAAACACTTGTTTTAAA
Locus tag: CPS_0393
CPS_0393 -163 5.6 TTTAAAACACTTGTTTTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadB
Ortholog function: fatty oxidation complex, alpha subunit
Shewanella oneidensis MR-1 SO_0021 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella putrefaciens CN-32 Sputcn32_0013 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp W3-18-1 Sputw3181_0013 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp ANA-3 Shewana3_0024 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp MR-4 Shewmr4_0018 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp MR-7 Shewmr7_0016 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella baltica OS155 Sbal_0021 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella denitrificans OS217 Sden_0015 -149 6.1 AATTAAACGGCCGTTTAAAT
Shewanella frigidimarina NCIMB 400 Sfri_0013 -161 6.1 AATTAAACGGCCGTTTAAAT
Shewanella amazonensis SB2B Sama_0032 -145 5.9 AATTAAACGATCGTTTTAAT
Shewanella loihica PV-4 Shew_0019 -161 6.1 AATTAAACAAGTGTTTAAAT
Shewanella pealeana ATCC 700345 Spea_0018 -168 5.6 AACTAAACGGTCGTTTAAAT
Shewanella halifaxensis HAW-EB4 Shal_0016 -168 5.5 AACCAAACGACCGTTTAAAT
Shewanella piezotolerans WP3 swp_0035 -161 5.5 ATTCGAACACTCGTTTAAAT
Shewanella sediminis HAW-EB3 Ssed_0023 -228 6.1 AATCAAACACCCGTTTAAAT
Shewanella woodyi ATCC 51908 Swoo_0021 -166 6.1 AATCAAACAAGTGTTTAAAT
Position: -186
Score: 5.5
Sequence: ATTCAAACTAATGTTTTAAT
Locus tag: CPS_1191
CPS_1191 -186 5.5 ATTCAAACTAATGTTTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2935
Ortholog function: oxidoreductase, short-chain dehydrogenase/reductase family
Shewanella oneidensis MR-1 SO_2935 -86 4.5 TTTCATTCATTTGTTTGAAA
-73 4.5 TTTGAAACATGCGTTTAGCA
Shewanella putrefaciens CN-32 Sputcn32_2396 -86 4.5 TTTCATTCATTTGTTTGAAA
-73 4.5 TTTGAAACATGCGTTTATCA
Shewanella sp W3-18-1 Sputw3181_1612 -86 4.5 TTTCATTCATTTGTTTGAAA
-73 4.5 TTTGAAACATGCGTTTATCA
Shewanella sp ANA-3 Shewana3_1528 -86 4.5 TTTCATTCATTTGTTTGAAA
-73 4.5 TTTGAAACATGCGTTTAGCA
Shewanella sp MR-4 Shewmr4_1468 -86 4.5 TTTCATTCATTTGTTTGAAA
-73 4.5 TTTGAAACATGCGTTTAGCA
Shewanella sp MR-7 Shewmr7_1534 -86 4.5 TTTCATTCATTTGTTTGAAA
-73 4.5 TTTGAAACATGCGTTTAGCA
Shewanella baltica OS155 Sbal_2694 -86 4.5 TTTCATTCATTTGTTTGAAA
-73 4.5 TTTGAAACATGCGTTTATCA
Shewanella denitrificans OS217 Sden_2473 -73 5.3 TTTAAAACAATCGTTTACTT
Shewanella frigidimarina NCIMB 400 Sfri_2572 -86 4.6 TATTAATCATTTGTTTCAAA
-73 5.3 TTTCAAACGGTCGTTTATTT
Shewanella amazonensis SB2B Sama_2121 -73 5.1 TTTTAAACAGCTGTATGACT
Shewanella loihica PV-4 Shew_2409 -87 4.4 AATCAGTCATTTGTTTTAAA
-74 4.4 TTTTAAACATTCGTTTCAGG
Shewanella pealeana ATCC 700345 Spea_1649 -86 4.5 GATTAATCGTTTGTTTAAAA
-73 4.9 TTTAAAACAGCTGTTTATCA
Shewanella halifaxensis HAW-EB4 Shal_2614 -73 4.9 TTTAAAACAGCTGTTTATCA
Shewanella piezotolerans WP3 swp_1930 -86 5.1 AATTAATCGTTTGTTTAAAA
-73 5 TTTAAAACAGCTGTTTACCA
Shewanella sediminis HAW-EB3 Ssed_1692 -86 5.1 AATTAATCATTTGTTTTAAA
Shewanella woodyi ATCC 51908 Swoo_2905 -86 5.1 AATTAATCATTTGTTTTAAA
Position: -99
Score: 5.8
Sequence: TATCAAACACTTGTTTGAAT
Position: -80
Score: 5.4
Sequence: TATCAAACGCACGTTTGAAA
Locus tag: CPS_3686
CPS_3686 -99 5.8 TATCAAACACTTGTTTGAAT
-80 5.4 TATCAAACGCACGTTTGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: etfD
Ortholog function: electron-transferring-flavoprotein dehydrogenase
Shewanella oneidensis MR-1 SO_4453 -70 5.4 AATAAAACGCCCGTTTACAA
Shewanella putrefaciens CN-32 Sputcn32_0388 -70 5.4 AATAAAACGCCCGTTTACAA
Shewanella sp W3-18-1 Sputw3181_0242 -70 5.4 AATAAAACGCCCGTTTACAA
Shewanella sp ANA-3 Shewana3_0273 -74 5.4 AATAAAACGCCCGTTTACAA
Shewanella sp MR-4 Shewmr4_0272 -74 5.4 AATAAAACGCCCGTTTACAA
Shewanella sp MR-7 Shewmr7_3749 -74 5.4 AATAAAACGCCCGTTTACAA
Shewanella baltica OS155 Sbal_0283 -70 5.4 AATAAAACGCCCGTTTACAA
Shewanella amazonensis SB2B Sama_3523 -51 5.4 TATAAAACACCCGTTTACAT
Shewanella loihica PV-4 Shew_0086 -47 5.7 AATAAAACACCCGTTTCAAT
Shewanella pealeana ATCC 700345 Spea_4121 -80 5.1 ATTAAAACACCCGTTTATAG
Shewanella halifaxensis HAW-EB4 Shal_0121 -79 5.1 ATTAAAACACCCGTTTATAG
Shewanella piezotolerans WP3 swp_5010 -76 5.1 ATTAAAACACCCGTTTATAG
Shewanella sediminis HAW-EB3 Ssed_4403 -49 5.2 ATTAAAACACCCGTTTAACG
Shewanella woodyi ATCC 51908 Swoo_4794 -45 5.2 ATTAAAACACCCGTTTAACG
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