Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of HexR regulog to Colwellia psychrerythraea 34H

Reference regulog properties
Source regulog: HexR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Colwellia psychrerythraea 34H
Orthologous TF(s) CPS_2280
Regulated genes 4
Built upon 316 sites [see more]
Predicted regulatory interactions in Colwellia psychrerythraea 34H
Locus tag Position Score Sequence
Position: -50
Score: 4.1
Sequence: TGGTTACTTTATTTCAA
Locus tag: CPS_1275
CPS_1275 -50 4.1 TGGTTACTTTATTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gcvH
Ortholog function: Glycine cleavage system H protein
Shewanella oneidensis MR-1 SO_0780 -320 5.1 ATGTAAAAAAATTACAT
Shewanella putrefaciens CN-32 Sputcn32_3210 -176 5.1 ATGTAAAAAAATTACAT
Shewanella sp W3-18-1 Sputw3181_0731 -176 5.1 ATGTAAAAAAATTACAT
Shewanella sp ANA-3 Shewana3_3500 -320 5.1 ATGTAAAAAAATTACAT
Shewanella sp MR-4 Shewmr4_3330 -322 5.1 ATGTAAAAAAATTACAT
Shewanella sp MR-7 Shewmr7_0623 -321 5.1 ATGTAAAAAAATTACAT
Shewanella baltica OS155 Sbal_0618 -372 5.1 ATGTAAAAAAATTACAT
Shewanella frigidimarina NCIMB 400 Sfri_3150 -154 5.3 ATGTAAAAAAATTACAA
Shewanella loihica PV-4 Shew_3063 -395 4.9 ATGTAAAAAAACTACAT
Shewanella halifaxensis HAW-EB4 Shal_3374 -237 4.2 ATGTAAAAAGTTTACAT
Shewanella piezotolerans WP3 swp_0914 -187 4.9 GTGTAAATAAATTACAT
-48 4.5 GTCTTATAATATTACAG
Shewanella sediminis HAW-EB3 Ssed_3674 -237 4.9 ATGTAAAAAAACTACAT
Position: -302
Score: 5.4
Sequence: TTGTAATTTTACTACAT
Locus tag: CPS_2280
CPS_2280 -302 5.4 TTGTAATTTTACTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hexR
Ortholog function: Central carbohydrate metabolism transcription regulator HexR, RpiR family
Shewanella oneidensis MR-1 SO_2490 -249 5 TTGTAATATAACAACAG
Shewanella putrefaciens CN-32 Sputcn32_1865 -252 4.8 TTGTTGTAATATAACAA
-249 5 TTGTAATATAACAACAG
Shewanella sp W3-18-1 Sputw3181_2143 -249 5 TTGTAATATAACAACAG
Shewanella sp ANA-3 Shewana3_2152 -250 5 TTGTAATATAACAACAG
Shewanella sp MR-4 Shewmr4_2047 -250 5 TTGTAATATAACAACAG
Shewanella sp MR-7 Shewmr7_1928 -250 5 TTGTAATATAACAACAG
Shewanella baltica OS155 Sbal_2242 -250 5 TTGTAATATAACAACAG
Shewanella denitrificans OS217 Sden_2080 -249 5 TTGTAATATAACAACAG
Shewanella frigidimarina NCIMB 400 Sfri_1891 -266 5 TTGTAATATAACAACAG
-122 4.5 TTGAAAAATAACTACAG
-54 4.6 ATGATATAAAATTACAT
Shewanella amazonensis SB2B Sama_1813 -251 5 TTGTAATATAACAACAG
Shewanella loihica PV-4 Shew_2049 -249 5 TTGTAATATAACAACAG
-151 4.8 TTGTGATTAAATTACTA
Shewanella pealeana ATCC 700345 Spea_2336 -254 5 TTGTAATATAACAACAG
-157 4.3 TCGTGATAAAATTACTA
-40 4.5 ATATAATAAAACTACAT
Shewanella halifaxensis HAW-EB4 Shal_1948 -252 5 TTGTAATATAACAACAG
-155 4.8 TTGTGATAAAATTACTA
Shewanella piezotolerans WP3 swp_2389 -252 5 TTGTAATATAACAACAG
-155 4.3 TCGTGATAAAATTACTA
-40 4.5 ATATAATAAAACTACAT
Shewanella sediminis HAW-EB3 Ssed_2069 -248 5 TTGTAATATAACAACAG
-150 4.3 TCGTGATTAAATTACTA
Shewanella woodyi ATCC 51908 Swoo_2540 -248 5 TTGTAATATAACAACAG
-150 4.8 TTGTGATTAAATTACTA
Position: -166
Score: 5.4
Sequence: ATGTAGTAAAATTACAA
Position: -105
Score: 5
Sequence: ATGTAGTTTAGTTACAA
Locus tag: CPS_2281
CPS_2281 -166 5.4 ATGTAGTAAAATTACAA
-105 5 ATGTAGTTTAGTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: zwf
Ortholog function: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Shewanella oneidensis MR-1 SO_2489 -78 5 CTGTTGTTATATTACAA
Shewanella putrefaciens CN-32 Sputcn32_1866 -78 5 CTGTTGTTATATTACAA
Shewanella sp W3-18-1 Sputw3181_2142 -78 5 CTGTTGTTATATTACAA
Shewanella sp ANA-3 Shewana3_2151 -79 5 CTGTTGTTATATTACAA
Shewanella sp MR-4 Shewmr4_2046 -79 5 CTGTTGTTATATTACAA
Shewanella sp MR-7 Shewmr7_1929 -79 5 CTGTTGTTATATTACAA
Shewanella baltica OS155 Sbal_2241 -79 5 CTGTTGTTATATTACAA
Shewanella denitrificans OS217 Sden_2079 -260 4.2 TAGTTGTTTTATTACCT
-88 5 CTGTTGTTATATTACAA
Shewanella frigidimarina NCIMB 400 Sfri_1892 -232 4.5 CTGTAGTTATTTTTCAA
-88 5 CTGTTGTTATATTACAA
Shewanella amazonensis SB2B Sama_1812 -78 5 CTGTTGTTATATTACAA
Shewanella loihica PV-4 Shew_2048 -174 4.8 TAGTAATTTAATCACAA
-76 5 CTGTTGTTATATTACAA
Shewanella pealeana ATCC 700345 Spea_2335 -54 5 CTGTTGTTATATTACAA
Shewanella halifaxensis HAW-EB4 Shal_1949 -175 4.8 TAGTAATTTTATCACAA
-78 5 CTGTTGTTATATTACAA
Shewanella piezotolerans WP3 swp_2390 -175 4.3 TAGTAATTTTATCACGA
-78 5 CTGTTGTTATATTACAA
Shewanella sediminis HAW-EB3 Ssed_2070 -176 4.3 TAGTAATTTAATCACGA
-78 5 CTGTTGTTATATTACAA
Shewanella woodyi ATCC 51908 Swoo_2539 -175 4.8 TAGTAATTTAATCACAA
-77 5 CTGTTGTTATATTACAA
Position: -234
Score: 5
Sequence: ATGTAGTAAAATTACAC
Locus tag: CPS_2341
CPS_2341 -234 5 ATGTAGTAAAATTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: gnd
Ortholog function: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Shewanella oneidensis MR-1 SO_1902 -82 5 TGGTAATTAAGTTACAA
Shewanella putrefaciens CN-32 Sputcn32_1723 -82 5 TGGTAATTAAGTTACAA
Shewanella sp W3-18-1 Sputw3181_2302 -82 5 TGGTAATTAAGTTACAA
Shewanella sp ANA-3 Shewana3_1677 -82 5 TGGTAATTAAGTTACAA
Shewanella sp MR-4 Shewmr4_1609 -82 5 TGGTAATTAAGTTACAA
Shewanella sp MR-7 Shewmr7_1684 -82 5 TGGTAATTAAGTTACAA
Shewanella baltica OS155 Sbal_2824 -82 5 TGGTAATTAAGTTACAA
Shewanella frigidimarina NCIMB 400 Sfri_2724 -90 5 TGGTAATTTAGTTACAA
Shewanella amazonensis SB2B Sama_1365 -74 4.2 CTGTAATTCAGTTACCA
Shewanella loihica PV-4 Shew_2561 -172 4.6 TAGTAATTAACTTACCA
Shewanella pealeana ATCC 700345 Spea_2794 -127 4.6 TAGTAATTAAGTTACCA
Shewanella halifaxensis HAW-EB4 Shal_2899 -134 4.6 TAGTAATTAAGTTACCA
Shewanella piezotolerans WP3 swp_3432 -177 4.6 TAGTAATTTAGTTACCA
Shewanella woodyi ATCC 51908 Swoo_3220 -239 4.6 TAGTAATTAACTTACCA
© 2009-2020 RegPrecise