Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of ArgR regulog to Colwellia psychrerythraea 34H

Reference regulog properties
Source regulog: ArgR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Colwellia psychrerythraea 34H
Orthologous TF(s) CPS_4515, CPS_0697
Regulated genes 13
Built upon 502 sites [see more]
Predicted regulatory interactions in Colwellia psychrerythraea 34H
Locus tag Position Score Sequence
Position: -51
Score: 4.5
Sequence: ATTCCATATGAATTCACT
Locus tag: CPS_0086
CPS_0086 -51 4.5 ATTCCATATGAATTCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2753
Ortholog function: Prolyl endopeptidase (EC 3.4.21.26)
Shewanella oneidensis MR-1 SO_2753 -445 4.1 AATGCATTTGCAATCAAC
-173 5 AATGCATAAAAATACACT
Shewanella putrefaciens CN-32 Sputcn32_1602 -444 4.1 AATGCATTTGCAATCAAC
-193 3.6 AATAACTTATCAATCAGT
-172 5 AGTGCATAAAAATACATT
Shewanella sp W3-18-1 Sputw3181_2420 -444 4.1 AATGCATTTGCAATCAAC
-193 3.6 AATAACTTATCAATCAGT
-172 5 AGTGCATAAAAATACATT
Shewanella sp ANA-3 Shewana3_2536 -444 4.1 AATGCATTTGCAATCAAC
-172 5 AATGCATAAAAATACACT
Shewanella sp MR-4 Shewmr4_2373 -445 4.1 AATGCATTTGCAATCAAC
-182 4.2 AGTCAAAATTAATGCATA
-172 5 AATGCATAAAAATACACT
Shewanella sp MR-7 Shewmr7_2445 -445 4.1 AATGCATTTGCAATCAAC
-172 5 AATGCATAAAAATACACT
Shewanella baltica OS155 Sbal_1741 -444 4.1 AATGCATTTGCAATCAAC
-192 3.9 AATAACTTATAAATCACT
-171 4.9 AGTGCATAATAATACACT
Shewanella pealeana ATCC 700345 Spea_2569 -297 4.2 ATTGAATAAAGATGAACT
-215 3.9 CATGATATTTAATTCATC
Shewanella halifaxensis HAW-EB4 Shal_1686 -230 3.9 CATGATATTTAATTCATC
Position: -207
Score: 4.2
Sequence: TCTGCAAAATCATTCACC
Locus tag: CPS_0162
CPS_0162 -207 4.2 TCTGCAAAATCATTCACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp(Arg)
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1 SO_2427 -383 4.7 TATGCATATTTTTTCATT
-204 3.7 TATGTGTAAGCATTCAAT
Shewanella putrefaciens CN-32 Sputcn32_1940 -478 4 TGTGCATAAAAATTACAT
Shewanella sp W3-18-1 Sputw3181_2068 -517 3.8 GATGCATATTTGTTAATT
-478 4 TGTGCATAAAAATTACAT
Shewanella sp ANA-3 Shewana3_1958 -468 3.9 AATCACAATTTATTCATT
-384 3.8 TATGCATATTTCTCCATA
-106 3.6 ACTGAATGAAAGTGAATC
Shewanella sp MR-4 Shewmr4_1903 -457 3.5 AATCACAAGTTATTCATT
-373 3.6 CGTGCATAATTAATCGAC
-105 3.6 ACTGAATGAAAGTGAATC
Shewanella sp MR-7 Shewmr7_2075 -457 3.5 AATCACAAGTTATTCATT
-373 3.9 TGTGCATAATTAATCGAC
-105 3.6 ACTGAATGAAAGTGAATC
Shewanella baltica OS155 Sbal_2044 -487 3.8 TTTGCATAAATATTACAA
-390 3.5 TGTCTATAGCTATGCATT
Shewanella frigidimarina NCIMB 400 Sfri_2416 -451 4.9 TCTGAATAAATACTCAGT
-72 4.2 ACTGACCAATTATTCATA
Shewanella amazonensis SB2B Sama_1838 -201 5.5 TTTGAATAAATATTCAGT
Shewanella loihica PV-4 Shew_2074 -609 4.7 AGTGCATTTAAATTGAAG
Shewanella piezotolerans WP3 swp_2362 -612 4 TGTGATTTTTAATGCCTC
-393 3.7 AGTTCATTTAATATCAAA
Shewanella sediminis HAW-EB3 Ssed_2036 -287 3.6 TTTGCATGGTTAGTGAAA
Shewanella woodyi ATCC 51908 Swoo_2565 -598 3.9 TGTGCATATAATTTAATC
-551 4.3 GATGAGTATATATTGATT
Position: -31
Score: 4.3
Sequence: TTTAAGTAAATATTCAAT
Locus tag: CPS_0459
CPS_0459 -31 4.3 TTTAAGTAAATATTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argE
Ortholog function: Acetylornithine deacetylase (EC 3.5.1.16)
Shewanella amazonensis SB2B Sama_0255 -50 3.7 ACTCTTTAATTATGCAAT
Shewanella loihica PV-4 Shew_0201 -53 4.2 TATGCAATAATATTGAAT
Shewanella pealeana ATCC 700345 Spea_0226 -27 3.8 TTTGAATATATATTTGGG
Shewanella halifaxensis HAW-EB4 Shal_4094 -122 3.8 ATTGAACATATATACTCT
-26 4.5 TTTGAATATATATTTAGG
Shewanella piezotolerans WP3 swp_2054 -143 3.4 AATACTTAATAATTGAAC
-27 4.5 TTTGAATATATATTTAGG
Shewanella sediminis HAW-EB3 Ssed_4277 -48 3.5 ACAAACTAATTATGCAAT
-27 4 TTTGAATATATATTTTAC
Shewanella woodyi ATCC 51908 Swoo_0328 -28 4 TTTGAATATATATTTTAC
Position: -108
Score: 4.3
Sequence: ATTGAATATTTACTTAAA
Locus tag: CPS_0460
CPS_0460 -108 4.3 ATTGAATATTTACTTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Shewanella oneidensis MR-1 SO_0275 -327 3.6 ATTGAAATATTAAGTAGT
-249 4 TAAAAATATATATTCACA
-127 3.7 AGTGAATAAAATAACAAG
Shewanella putrefaciens CN-32 Sputcn32_3717 -192 4.2 TATGAAAATAAATTAAAA
-57 3.8 AGTGAATAAAATAACAAC
Shewanella sp W3-18-1 Sputw3181_3860 -193 4.2 TATGAAAATAAATTAAAA
-180 4 TAAAAATATATATTCACA
-57 4 AGTGAATAAAATAACAAT
Shewanella sp ANA-3 Shewana3_3905 -357 3.7 ACTGATTTTTCAGTCTTT
-327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella sp MR-4 Shewmr4_3709 -327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella sp MR-7 Shewmr7_0236 -327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella baltica OS155 Sbal_4124 -471 4.2 ATTCAATATAAATGCGAA
-252 4 TAAAAATATATATTCACA
-130 3.8 AGTGAATAAAATAACAAC
Shewanella denitrificans OS217 Sden_0250 -235 4.3 AATAAATATGTATTCACA
-214 3.7 ATTGCATAACAATTTGAT
-145 4.3 ATCGAATATAAAAGCACA
Shewanella amazonensis SB2B Sama_0256 -241 3.7 AATAGATATTCATGCATA
Shewanella loihica PV-4 Shew_0202 -249 3.7 TAAAAATATCTATTCAAT
-228 3.5 ATTGCATAATTAGTTTGT
Shewanella pealeana ATCC 700345 Spea_0227 -266 3.8 CCCAAATATATATTCAAA
Shewanella halifaxensis HAW-EB4 Shal_4093 -267 4.5 CCTAAATATATATTCAAA
Shewanella piezotolerans WP3 swp_2055 -266 4.5 CCTAAATATATATTCAAA
Shewanella sediminis HAW-EB3 Ssed_4276 -256 4 GTAAAATATATATTCAAA
-235 3.5 ATTGCATAATTAGTTTGT
Shewanella woodyi ATCC 51908 Swoo_0329 -423 3.5 TTTGCATTCAAAACCAAG
-263 4 GTAAAATATATATTCAAA
Position: -76
Score: 5.6
Sequence: ATTGAATAAATATTCACT
Locus tag: CPS_0697
CPS_0697 -76 5.6 ATTGAATAAATATTCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argR
Ortholog function: Arginine metabolism transcriptional regulator ArgR
Shewanella oneidensis MR-1 SO_0769 -93 5.5 ATTGCATTTTTATTCAGT
Shewanella putrefaciens CN-32 Sputcn32_3220 -96 5.5 AGTGAATTTTTATTCAAC
Shewanella sp W3-18-1 Sputw3181_0721 -96 5.5 AGTGAATTTTTATTCAAC
Shewanella sp ANA-3 Shewana3_3510 -93 5.5 ATTGCATTTTTATTCAGT
Shewanella sp MR-4 Shewmr4_3340 -93 5.5 ATTGCATTTTTATTCAGT
Shewanella sp MR-7 Shewmr7_0613 -93 5.2 ACTGCATTTTTATTCATC
Shewanella baltica OS155 Sbal_0608 -96 5.5 AGTGAATTTTTATTCAAC
Shewanella denitrificans OS217 Sden_0825 -89 5.7 AGTGAATTTTTATTCACT
Shewanella frigidimarina NCIMB 400 Sfri_0640 -104 5.6 AATGAATTTTTATTCAAT
Shewanella amazonensis SB2B Sama_0671 -98 5.3 TCTGCATTTTTATTCACA
Shewanella loihica PV-4 Shew_0866 -95 5.1 CCTGAATTTTTATTCACA
Shewanella pealeana ATCC 700345 Spea_0849 -95 5.5 AATGAATTTTTATTCAGA
Shewanella halifaxensis HAW-EB4 Shal_0902 -95 5.5 AATGAATTTTTATTCACA
Shewanella piezotolerans WP3 swp_4101 -95 5.3 CATGAATTTTTATTCAAT
Shewanella sediminis HAW-EB3 Ssed_0951 -95 5.2 GTTGCATTTTTATTCATA
Shewanella woodyi ATCC 51908 Swoo_1001 -95 5 ATTGCATTCTTATTCATT
Position: -278
Score: 4.4
Sequence: CTTGGATGTATATTCAGT
Position: -263
Score: 4
Sequence: AGTGTTTATGAATGCAAA
Locus tag: CPS_1048
CPS_1048 -278 4.4 CTTGGATGTATATTCAGT
-263 4 AGTGTTTATGAATGCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: oadG
Ortholog function: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Shewanella putrefaciens CN-32 Sputcn32_1029 -265 4.3 TATCCTTATAAATTCACT
-154 4.3 TGTGAATATTTAGTCTTT
-133 4 TGTGATTTTATATGCTGC
Shewanella sp W3-18-1 Sputw3181_3136 -265 4.3 TATCCTTATAAATTCACT
-154 4.3 TGTGAATATTTAGTCTTT
-133 4 TGTGATTTTATATGCTGC
Shewanella sp MR-7 Shewmr7_3069 -322 3.9 ATTCAATTTAAAGGCCAT
-176 3.7 AACGAATGTTCATTTAAT
Shewanella baltica OS155 Sbal_1024 -139 4.9 TGTGATTTTTTATTCAAA
Shewanella frigidimarina NCIMB 400 Sfri_1065 -182 3.8 GTTGAATAATCGTTGAGT
-165 4.6 TTTGAATATTTATGCTTT
Shewanella amazonensis SB2B Sama_1051 -352 4.1 ACTGCATATACTTCCACT
-307 3.6 TCTGCCCATGAATGCAGT
Shewanella loihica PV-4 Shew_1219 -377 4.3 ATTGCATAATCTTGCATA
-331 4 ATTCAATTTTCAAGCAGA
Shewanella pealeana ATCC 700345 Spea_1198 -73 4.2 TGTGAATGAATAGTGAAT
-62 4.1 AGTGAATATTTATTTTTA
Shewanella halifaxensis HAW-EB4 Shal_1235 -63 4.8 GGTGAATATTTATTGAGT
-43 4.1 CATCCATGTTTATTCACA
Shewanella piezotolerans WP3 swp_1378 -157 3.6 TATCAACAGAAATGCATA
-136 4.4 TGTGAATAAATAGTGATT
Shewanella sediminis HAW-EB3 Ssed_1320 -322 4.4 ACTGCATAACTTTTCATT
Shewanella woodyi ATCC 51908 Swoo_3337 -110 4.4 AATGAATAAAAAGTTATT
Position: -83
Score: 4.4
Sequence: TTTGAACAATCATTCAAA
Locus tag: CPS_1397
CPS_1397 -83 4.4 TTTGAACAATCATTCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3392
Ortholog function: NADH-dependent flavin oxidoreductase, Oye family
Shewanella oneidensis MR-1 SO_3392 -84 4.6 ATTGAACAAACATTCAAA
-60 4.6 CTTGAATGATCATTCAAA
Shewanella putrefaciens CN-32 Sputcn32_2720 -84 4.5 TTTGAACAAACATTCAAA
-60 4.7 CTTGAATGTTCATTCAAA
-33 4 CTTGAATGCACATTCAAG
Shewanella sp W3-18-1 Sputw3181_1292 -84 4.5 TTTGAACAAACATTCAAA
-60 4.7 CTTGAATGTTCATTCAAA
-33 4 CTTGAATGCACATTCAAG
Shewanella sp ANA-3 Shewana3_1159 -84 4.5 TTTGAACAAACATTCAAA
-60 3.9 CTTGAATGATCGTTCAAA
-33 4 CTTGAATGCACATTCAAG
Shewanella sp MR-4 Shewmr4_1158 -84 4.5 TTTGAACAAACATTCAAA
-60 3.9 CTTGAATGATCGTTCAAA
Shewanella sp MR-7 Shewmr7_1229 -84 4.5 TTTGAACAAACATTCAAA
-60 3.9 CTTGAATGATCGTTCAAA
-33 4.2 CTTGAATGCATATTCAAG
Shewanella baltica OS155 Sbal_1249 -84 4.9 TTTGAATGAACATTCAAA
-33 4.2 CTTGAATGCATATTCAAG
Shewanella denitrificans OS217 Sden_1230 -81 4.7 TTTGAAAAATTATTCAAA
-58 4.2 CTTGAATGAATGTTCAAA
-31 4 CTTGAATGCACATTCAAG
Shewanella frigidimarina NCIMB 400 Sfri_1089 -61 4.4 CTTGAATGTGCATTCAAT
-33 4.2 CTTGAATGCATATTCAAG
Shewanella amazonensis SB2B Sama_2407 -85 4.5 TTTGAATGTATGTTCAAA
-61 4 CTTGAATGTATGTTCAAG
-34 3.7 TTTGAATGCCTGTTCAAA
Shewanella loihica PV-4 Shew_3098 -83 4.2 TTTGAATGAACGTTCAAA
Shewanella piezotolerans WP3 swp_0975 -83 4.5 TTTGAATGTTTGTTCAAA
-59 4.8 CTTGAATGATTATTCAAA
-32 4.4 CTTGAATGTTCATTCAAG
Shewanella sediminis HAW-EB3 Ssed_3644 -83 4.5 TTTGAATGTTTGTTCAAA
-59 3.9 CTTGAATGATCGTTCAAA
-32 4.4 CTTGAATGAACATTCAAG
Shewanella woodyi ATCC 51908 Swoo_4055 -83 4.5 TTTGAATGTTTGTTCAAA
-59 3.9 CTTGAATGATCGTTCAAA
-32 4.4 CTTGAATGAACATTCAAG
Position: -38
Score: 4.1
Sequence: ACTGGTTTTTTATTCATG
Locus tag: CPS_3825
CPS_3825 -38 4.1 ACTGGTTTTTTATTCATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: recN
Ortholog function: DNA repair protein RecN
Shewanella oneidensis MR-1 SO_3462 -71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella putrefaciens CN-32 Sputcn32_2771 -71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp W3-18-1 Sputw3181_1241 -71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp ANA-3 Shewana3_1104 -71 5.1 ACTGTATATAAATTCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp MR-4 Shewmr4_1104 -71 5.1 ACTGTATATAAATTCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp MR-7 Shewmr7_1170 -71 5.1 ACTGTATATAAATTCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella baltica OS155 Sbal_3153 -137 3.6 CATGCATAATCAGTTAAT
-71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella denitrificans OS217 Sden_1151 -95 3.7 ACTCAAAATTAACTCAGC
-70 3.9 ACTGTATAAAAAACCAGT
-48 3.7 ACTGTTTATCAATACAGT
Shewanella frigidimarina NCIMB 400 Sfri_1043 -112 3.6 GATGATAAAATAGTCAAC
-71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella amazonensis SB2B Sama_1026 -72 3.8 ACTGTACAAAAAATCAGT
-50 3.7 ACTGTGTATCAATACAGT
Shewanella loihica PV-4 Shew_1196 -61 5.1 ACTGTATAAAAATTCAGT
Shewanella sediminis HAW-EB3 Ssed_1281 -61 4.6 ACTGTATATAAAATCAGT
Position: -167
Score: 4.1
Sequence: ATTGATTTTTTATTAAAG
Locus tag: CPS_4843
CPS_4843 -167 4.1 ATTGATTTTTTATTAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvG
Ortholog function: Acetolactate synthase large subunit (EC 2.2.1.6)
Shewanella oneidensis MR-1 SO_4347 -216 4.2 CGTGATTATTAAATCACA
Shewanella putrefaciens CN-32 Sputcn32_3614 -214 4.2 CGTGATTATTAAATCACA
Shewanella sp W3-18-1 Sputw3181_3754 -214 4.2 CGTGATTATTAAATCACA
Shewanella sp ANA-3 Shewana3_0356 -201 4.5 AGTGATTATTAAATCACA
Shewanella sp MR-4 Shewmr4_0362 -201 4.5 AGTGATTATTAAATCACA
Shewanella sp MR-7 Shewmr7_3664 -219 4.5 AGTGATTATTAAATCACA
Shewanella denitrificans OS217 Sden_3414 -153 4.6 AGTGATTATTAAGTCACA
Shewanella frigidimarina NCIMB 400 Sfri_0422 -202 4.6 AGTGATTATTAAGTCACA
Shewanella amazonensis SB2B Sama_3281 -157 4.5 AGTGATTATTAAATCACA
Shewanella loihica PV-4 Shew_0289 -166 4.5 AGTGATTATTAAATCACA
Shewanella pealeana ATCC 700345 Spea_0345 -181 4.2 CGTGATTATTAAATCACA
Shewanella halifaxensis HAW-EB4 Shal_3944 -193 4.2 CGTGATTATTAAATCACA
Shewanella piezotolerans WP3 swp_0359 -189 4.2 CGTGATTATTAAATCACA
Shewanella woodyi ATCC 51908 Swoo_0442 -190 4.2 CGTGATTATTAAATCACA
© 2009-2020 RegPrecise