Propagation of ArgR regulog to Colwellia psychrerythraea 34H
Source regulog: | ArgR - Shewanellaceae |
Regulator type: | Transcription factor |
Regulator family: | ArgR |
Regulation mode: | repressor (activator) |
Biological process: | Arginine degradation; Arginine biosynthesis |
Effector: | Arginine |
Phylum: | Proteobacteria/gamma |
Propagated regulon: | |
Target genome | Colwellia psychrerythraea 34H |
Orthologous TF(s) | CPS_4515, CPS_0697 |
Regulated genes | 13 |

Locus tag | Position | Score | Sequence | |
---|---|---|---|---|
Position: -51
Score: 4.5 Sequence: ATTCCATATGAATTCACT
Locus tag: CPS_0086
|
||||
CPS_0086 | -51 | 4.5 | ATTCCATATGAATTCACT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: SO2753 | ||||
Ortholog function: Prolyl endopeptidase (EC 3.4.21.26) | ||||
Shewanella oneidensis MR-1 | SO_2753 | -445 | 4.1 | AATGCATTTGCAATCAAC |
-173 | 5 | AATGCATAAAAATACACT | ||
Shewanella putrefaciens CN-32 | Sputcn32_1602 | -444 | 4.1 | AATGCATTTGCAATCAAC |
-193 | 3.6 | AATAACTTATCAATCAGT | ||
-172 | 5 | AGTGCATAAAAATACATT | ||
Shewanella sp W3-18-1 | Sputw3181_2420 | -444 | 4.1 | AATGCATTTGCAATCAAC |
-193 | 3.6 | AATAACTTATCAATCAGT | ||
-172 | 5 | AGTGCATAAAAATACATT | ||
Shewanella sp ANA-3 | Shewana3_2536 | -444 | 4.1 | AATGCATTTGCAATCAAC |
-172 | 5 | AATGCATAAAAATACACT | ||
Shewanella sp MR-4 | Shewmr4_2373 | -445 | 4.1 | AATGCATTTGCAATCAAC |
-182 | 4.2 | AGTCAAAATTAATGCATA | ||
-172 | 5 | AATGCATAAAAATACACT | ||
Shewanella sp MR-7 | Shewmr7_2445 | -445 | 4.1 | AATGCATTTGCAATCAAC |
-172 | 5 | AATGCATAAAAATACACT | ||
Shewanella baltica OS155 | Sbal_1741 | -444 | 4.1 | AATGCATTTGCAATCAAC |
-192 | 3.9 | AATAACTTATAAATCACT | ||
-171 | 4.9 | AGTGCATAATAATACACT | ||
Shewanella pealeana ATCC 700345 | Spea_2569 | -297 | 4.2 | ATTGAATAAAGATGAACT |
-215 | 3.9 | CATGATATTTAATTCATC | ||
Shewanella halifaxensis HAW-EB4 | Shal_1686 | -230 | 3.9 | CATGATATTTAATTCATC |
Position: -207
Score: 4.2 Sequence: TCTGCAAAATCATTCACC
Locus tag: CPS_0162
|
||||
CPS_0162 | -207 | 4.2 | TCTGCAAAATCATTCACC | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: omp(Arg) | ||||
Ortholog function: TonB-dependent receptor | ||||
Shewanella oneidensis MR-1 | SO_2427 | -383 | 4.7 | TATGCATATTTTTTCATT |
-204 | 3.7 | TATGTGTAAGCATTCAAT | ||
Shewanella putrefaciens CN-32 | Sputcn32_1940 | -478 | 4 | TGTGCATAAAAATTACAT |
Shewanella sp W3-18-1 | Sputw3181_2068 | -517 | 3.8 | GATGCATATTTGTTAATT |
-478 | 4 | TGTGCATAAAAATTACAT | ||
Shewanella sp ANA-3 | Shewana3_1958 | -468 | 3.9 | AATCACAATTTATTCATT |
-384 | 3.8 | TATGCATATTTCTCCATA | ||
-106 | 3.6 | ACTGAATGAAAGTGAATC | ||
Shewanella sp MR-4 | Shewmr4_1903 | -457 | 3.5 | AATCACAAGTTATTCATT |
-373 | 3.6 | CGTGCATAATTAATCGAC | ||
-105 | 3.6 | ACTGAATGAAAGTGAATC | ||
Shewanella sp MR-7 | Shewmr7_2075 | -457 | 3.5 | AATCACAAGTTATTCATT |
-373 | 3.9 | TGTGCATAATTAATCGAC | ||
-105 | 3.6 | ACTGAATGAAAGTGAATC | ||
Shewanella baltica OS155 | Sbal_2044 | -487 | 3.8 | TTTGCATAAATATTACAA |
-390 | 3.5 | TGTCTATAGCTATGCATT | ||
Shewanella frigidimarina NCIMB 400 | Sfri_2416 | -451 | 4.9 | TCTGAATAAATACTCAGT |
-72 | 4.2 | ACTGACCAATTATTCATA | ||
Shewanella amazonensis SB2B | Sama_1838 | -201 | 5.5 | TTTGAATAAATATTCAGT |
Shewanella loihica PV-4 | Shew_2074 | -609 | 4.7 | AGTGCATTTAAATTGAAG |
Shewanella piezotolerans WP3 | swp_2362 | -612 | 4 | TGTGATTTTTAATGCCTC |
-393 | 3.7 | AGTTCATTTAATATCAAA | ||
Shewanella sediminis HAW-EB3 | Ssed_2036 | -287 | 3.6 | TTTGCATGGTTAGTGAAA |
Shewanella woodyi ATCC 51908 | Swoo_2565 | -598 | 3.9 | TGTGCATATAATTTAATC |
-551 | 4.3 | GATGAGTATATATTGATT | ||
Position: -31
Score: 4.3 Sequence: TTTAAGTAAATATTCAAT
Locus tag: CPS_0459
|
||||
CPS_0459 | -31 | 4.3 | TTTAAGTAAATATTCAAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: argE | ||||
Ortholog function: Acetylornithine deacetylase (EC 3.5.1.16) | ||||
Shewanella amazonensis SB2B | Sama_0255 | -50 | 3.7 | ACTCTTTAATTATGCAAT |
Shewanella loihica PV-4 | Shew_0201 | -53 | 4.2 | TATGCAATAATATTGAAT |
Shewanella pealeana ATCC 700345 | Spea_0226 | -27 | 3.8 | TTTGAATATATATTTGGG |
Shewanella halifaxensis HAW-EB4 | Shal_4094 | -122 | 3.8 | ATTGAACATATATACTCT |
-26 | 4.5 | TTTGAATATATATTTAGG | ||
Shewanella piezotolerans WP3 | swp_2054 | -143 | 3.4 | AATACTTAATAATTGAAC |
-27 | 4.5 | TTTGAATATATATTTAGG | ||
Shewanella sediminis HAW-EB3 | Ssed_4277 | -48 | 3.5 | ACAAACTAATTATGCAAT |
-27 | 4 | TTTGAATATATATTTTAC | ||
Shewanella woodyi ATCC 51908 | Swoo_0328 | -28 | 4 | TTTGAATATATATTTTAC |
Position: -108
Score: 4.3 Sequence: ATTGAATATTTACTTAAA
Locus tag: CPS_0460
|
||||
CPS_0460 | -108 | 4.3 | ATTGAATATTTACTTAAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: argC | ||||
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) | ||||
Shewanella oneidensis MR-1 | SO_0275 | -327 | 3.6 | ATTGAAATATTAAGTAGT |
-249 | 4 | TAAAAATATATATTCACA | ||
-127 | 3.7 | AGTGAATAAAATAACAAG | ||
Shewanella putrefaciens CN-32 | Sputcn32_3717 | -192 | 4.2 | TATGAAAATAAATTAAAA |
-57 | 3.8 | AGTGAATAAAATAACAAC | ||
Shewanella sp W3-18-1 | Sputw3181_3860 | -193 | 4.2 | TATGAAAATAAATTAAAA |
-180 | 4 | TAAAAATATATATTCACA | ||
-57 | 4 | AGTGAATAAAATAACAAT | ||
Shewanella sp ANA-3 | Shewana3_3905 | -357 | 3.7 | ACTGATTTTTCAGTCTTT |
-327 | 4.4 | ACTGAGTTATTAAGCAGT | ||
-249 | 4 | TAAAAATATATATTCACA | ||
Shewanella sp MR-4 | Shewmr4_3709 | -327 | 4.4 | ACTGAGTTATTAAGCAGT |
-249 | 4 | TAAAAATATATATTCACA | ||
Shewanella sp MR-7 | Shewmr7_0236 | -327 | 4.4 | ACTGAGTTATTAAGCAGT |
-249 | 4 | TAAAAATATATATTCACA | ||
Shewanella baltica OS155 | Sbal_4124 | -471 | 4.2 | ATTCAATATAAATGCGAA |
-252 | 4 | TAAAAATATATATTCACA | ||
-130 | 3.8 | AGTGAATAAAATAACAAC | ||
Shewanella denitrificans OS217 | Sden_0250 | -235 | 4.3 | AATAAATATGTATTCACA |
-214 | 3.7 | ATTGCATAACAATTTGAT | ||
-145 | 4.3 | ATCGAATATAAAAGCACA | ||
Shewanella amazonensis SB2B | Sama_0256 | -241 | 3.7 | AATAGATATTCATGCATA |
Shewanella loihica PV-4 | Shew_0202 | -249 | 3.7 | TAAAAATATCTATTCAAT |
-228 | 3.5 | ATTGCATAATTAGTTTGT | ||
Shewanella pealeana ATCC 700345 | Spea_0227 | -266 | 3.8 | CCCAAATATATATTCAAA |
Shewanella halifaxensis HAW-EB4 | Shal_4093 | -267 | 4.5 | CCTAAATATATATTCAAA |
Shewanella piezotolerans WP3 | swp_2055 | -266 | 4.5 | CCTAAATATATATTCAAA |
Shewanella sediminis HAW-EB3 | Ssed_4276 | -256 | 4 | GTAAAATATATATTCAAA |
-235 | 3.5 | ATTGCATAATTAGTTTGT | ||
Shewanella woodyi ATCC 51908 | Swoo_0329 | -423 | 3.5 | TTTGCATTCAAAACCAAG |
-263 | 4 | GTAAAATATATATTCAAA | ||
Position: -76
Score: 5.6 Sequence: ATTGAATAAATATTCACT
Locus tag: CPS_0697
|
||||
CPS_0697 | -76 | 5.6 | ATTGAATAAATATTCACT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: argR | ||||
Ortholog function: Arginine metabolism transcriptional regulator ArgR | ||||
Shewanella oneidensis MR-1 | SO_0769 | -93 | 5.5 | ATTGCATTTTTATTCAGT |
Shewanella putrefaciens CN-32 | Sputcn32_3220 | -96 | 5.5 | AGTGAATTTTTATTCAAC |
Shewanella sp W3-18-1 | Sputw3181_0721 | -96 | 5.5 | AGTGAATTTTTATTCAAC |
Shewanella sp ANA-3 | Shewana3_3510 | -93 | 5.5 | ATTGCATTTTTATTCAGT |
Shewanella sp MR-4 | Shewmr4_3340 | -93 | 5.5 | ATTGCATTTTTATTCAGT |
Shewanella sp MR-7 | Shewmr7_0613 | -93 | 5.2 | ACTGCATTTTTATTCATC |
Shewanella baltica OS155 | Sbal_0608 | -96 | 5.5 | AGTGAATTTTTATTCAAC |
Shewanella denitrificans OS217 | Sden_0825 | -89 | 5.7 | AGTGAATTTTTATTCACT |
Shewanella frigidimarina NCIMB 400 | Sfri_0640 | -104 | 5.6 | AATGAATTTTTATTCAAT |
Shewanella amazonensis SB2B | Sama_0671 | -98 | 5.3 | TCTGCATTTTTATTCACA |
Shewanella loihica PV-4 | Shew_0866 | -95 | 5.1 | CCTGAATTTTTATTCACA |
Shewanella pealeana ATCC 700345 | Spea_0849 | -95 | 5.5 | AATGAATTTTTATTCAGA |
Shewanella halifaxensis HAW-EB4 | Shal_0902 | -95 | 5.5 | AATGAATTTTTATTCACA |
Shewanella piezotolerans WP3 | swp_4101 | -95 | 5.3 | CATGAATTTTTATTCAAT |
Shewanella sediminis HAW-EB3 | Ssed_0951 | -95 | 5.2 | GTTGCATTTTTATTCATA |
Shewanella woodyi ATCC 51908 | Swoo_1001 | -95 | 5 | ATTGCATTCTTATTCATT |
Position: -278
Score: 4.4 Sequence: CTTGGATGTATATTCAGT
Position: -263
Score: 4 Sequence: AGTGTTTATGAATGCAAA
Locus tag: CPS_1048
|
||||
CPS_1048 | -278 | 4.4 | CTTGGATGTATATTCAGT | |
-263 | 4 | AGTGTTTATGAATGCAAA | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: oadG | ||||
Ortholog function: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) | ||||
Shewanella putrefaciens CN-32 | Sputcn32_1029 | -265 | 4.3 | TATCCTTATAAATTCACT |
-154 | 4.3 | TGTGAATATTTAGTCTTT | ||
-133 | 4 | TGTGATTTTATATGCTGC | ||
Shewanella sp W3-18-1 | Sputw3181_3136 | -265 | 4.3 | TATCCTTATAAATTCACT |
-154 | 4.3 | TGTGAATATTTAGTCTTT | ||
-133 | 4 | TGTGATTTTATATGCTGC | ||
Shewanella sp MR-7 | Shewmr7_3069 | -322 | 3.9 | ATTCAATTTAAAGGCCAT |
-176 | 3.7 | AACGAATGTTCATTTAAT | ||
Shewanella baltica OS155 | Sbal_1024 | -139 | 4.9 | TGTGATTTTTTATTCAAA |
Shewanella frigidimarina NCIMB 400 | Sfri_1065 | -182 | 3.8 | GTTGAATAATCGTTGAGT |
-165 | 4.6 | TTTGAATATTTATGCTTT | ||
Shewanella amazonensis SB2B | Sama_1051 | -352 | 4.1 | ACTGCATATACTTCCACT |
-307 | 3.6 | TCTGCCCATGAATGCAGT | ||
Shewanella loihica PV-4 | Shew_1219 | -377 | 4.3 | ATTGCATAATCTTGCATA |
-331 | 4 | ATTCAATTTTCAAGCAGA | ||
Shewanella pealeana ATCC 700345 | Spea_1198 | -73 | 4.2 | TGTGAATGAATAGTGAAT |
-62 | 4.1 | AGTGAATATTTATTTTTA | ||
Shewanella halifaxensis HAW-EB4 | Shal_1235 | -63 | 4.8 | GGTGAATATTTATTGAGT |
-43 | 4.1 | CATCCATGTTTATTCACA | ||
Shewanella piezotolerans WP3 | swp_1378 | -157 | 3.6 | TATCAACAGAAATGCATA |
-136 | 4.4 | TGTGAATAAATAGTGATT | ||
Shewanella sediminis HAW-EB3 | Ssed_1320 | -322 | 4.4 | ACTGCATAACTTTTCATT |
Shewanella woodyi ATCC 51908 | Swoo_3337 | -110 | 4.4 | AATGAATAAAAAGTTATT |
Position: -83
Score: 4.4 Sequence: TTTGAACAATCATTCAAA
Locus tag: CPS_1397
|
||||
CPS_1397 | -83 | 4.4 | TTTGAACAATCATTCAAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: SO3392 | ||||
Ortholog function: NADH-dependent flavin oxidoreductase, Oye family | ||||
Shewanella oneidensis MR-1 | SO_3392 | -84 | 4.6 | ATTGAACAAACATTCAAA |
-60 | 4.6 | CTTGAATGATCATTCAAA | ||
Shewanella putrefaciens CN-32 | Sputcn32_2720 | -84 | 4.5 | TTTGAACAAACATTCAAA |
-60 | 4.7 | CTTGAATGTTCATTCAAA | ||
-33 | 4 | CTTGAATGCACATTCAAG | ||
Shewanella sp W3-18-1 | Sputw3181_1292 | -84 | 4.5 | TTTGAACAAACATTCAAA |
-60 | 4.7 | CTTGAATGTTCATTCAAA | ||
-33 | 4 | CTTGAATGCACATTCAAG | ||
Shewanella sp ANA-3 | Shewana3_1159 | -84 | 4.5 | TTTGAACAAACATTCAAA |
-60 | 3.9 | CTTGAATGATCGTTCAAA | ||
-33 | 4 | CTTGAATGCACATTCAAG | ||
Shewanella sp MR-4 | Shewmr4_1158 | -84 | 4.5 | TTTGAACAAACATTCAAA |
-60 | 3.9 | CTTGAATGATCGTTCAAA | ||
Shewanella sp MR-7 | Shewmr7_1229 | -84 | 4.5 | TTTGAACAAACATTCAAA |
-60 | 3.9 | CTTGAATGATCGTTCAAA | ||
-33 | 4.2 | CTTGAATGCATATTCAAG | ||
Shewanella baltica OS155 | Sbal_1249 | -84 | 4.9 | TTTGAATGAACATTCAAA |
-33 | 4.2 | CTTGAATGCATATTCAAG | ||
Shewanella denitrificans OS217 | Sden_1230 | -81 | 4.7 | TTTGAAAAATTATTCAAA |
-58 | 4.2 | CTTGAATGAATGTTCAAA | ||
-31 | 4 | CTTGAATGCACATTCAAG | ||
Shewanella frigidimarina NCIMB 400 | Sfri_1089 | -61 | 4.4 | CTTGAATGTGCATTCAAT |
-33 | 4.2 | CTTGAATGCATATTCAAG | ||
Shewanella amazonensis SB2B | Sama_2407 | -85 | 4.5 | TTTGAATGTATGTTCAAA |
-61 | 4 | CTTGAATGTATGTTCAAG | ||
-34 | 3.7 | TTTGAATGCCTGTTCAAA | ||
Shewanella loihica PV-4 | Shew_3098 | -83 | 4.2 | TTTGAATGAACGTTCAAA |
Shewanella piezotolerans WP3 | swp_0975 | -83 | 4.5 | TTTGAATGTTTGTTCAAA |
-59 | 4.8 | CTTGAATGATTATTCAAA | ||
-32 | 4.4 | CTTGAATGTTCATTCAAG | ||
Shewanella sediminis HAW-EB3 | Ssed_3644 | -83 | 4.5 | TTTGAATGTTTGTTCAAA |
-59 | 3.9 | CTTGAATGATCGTTCAAA | ||
-32 | 4.4 | CTTGAATGAACATTCAAG | ||
Shewanella woodyi ATCC 51908 | Swoo_4055 | -83 | 4.5 | TTTGAATGTTTGTTCAAA |
-59 | 3.9 | CTTGAATGATCGTTCAAA | ||
-32 | 4.4 | CTTGAATGAACATTCAAG | ||
Position: -38
Score: 4.1 Sequence: ACTGGTTTTTTATTCATG
Locus tag: CPS_3825
|
||||
CPS_3825 | -38 | 4.1 | ACTGGTTTTTTATTCATG | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: recN | ||||
Ortholog function: DNA repair protein RecN | ||||
Shewanella oneidensis MR-1 | SO_3462 | -71 | 4.6 | ACTGTATATAAAATCAGT |
-49 | 3.7 | ACTGTTTATCAATACAGT | ||
Shewanella putrefaciens CN-32 | Sputcn32_2771 | -71 | 4.6 | ACTGTATATAAAATCAGT |
-49 | 3.7 | ACTGTTTATCAATACAGT | ||
Shewanella sp W3-18-1 | Sputw3181_1241 | -71 | 4.6 | ACTGTATATAAAATCAGT |
-49 | 3.7 | ACTGTTTATCAATACAGT | ||
Shewanella sp ANA-3 | Shewana3_1104 | -71 | 5.1 | ACTGTATATAAATTCAGT |
-49 | 3.7 | ACTGTTTATCAATACAGT | ||
Shewanella sp MR-4 | Shewmr4_1104 | -71 | 5.1 | ACTGTATATAAATTCAGT |
-49 | 3.7 | ACTGTTTATCAATACAGT | ||
Shewanella sp MR-7 | Shewmr7_1170 | -71 | 5.1 | ACTGTATATAAATTCAGT |
-49 | 3.7 | ACTGTTTATCAATACAGT | ||
Shewanella baltica OS155 | Sbal_3153 | -137 | 3.6 | CATGCATAATCAGTTAAT |
-71 | 4.6 | ACTGTATATAAAATCAGT | ||
-49 | 3.7 | ACTGTTTATCAATACAGT | ||
Shewanella denitrificans OS217 | Sden_1151 | -95 | 3.7 | ACTCAAAATTAACTCAGC |
-70 | 3.9 | ACTGTATAAAAAACCAGT | ||
-48 | 3.7 | ACTGTTTATCAATACAGT | ||
Shewanella frigidimarina NCIMB 400 | Sfri_1043 | -112 | 3.6 | GATGATAAAATAGTCAAC |
-71 | 4.6 | ACTGTATATAAAATCAGT | ||
-49 | 3.7 | ACTGTTTATCAATACAGT | ||
Shewanella amazonensis SB2B | Sama_1026 | -72 | 3.8 | ACTGTACAAAAAATCAGT |
-50 | 3.7 | ACTGTGTATCAATACAGT | ||
Shewanella loihica PV-4 | Shew_1196 | -61 | 5.1 | ACTGTATAAAAATTCAGT |
Shewanella sediminis HAW-EB3 | Ssed_1281 | -61 | 4.6 | ACTGTATATAAAATCAGT |
Position: -167
Score: 4.1 Sequence: ATTGATTTTTTATTAAAG
Locus tag: CPS_4843
|
||||
CPS_4843 | -167 | 4.1 | ATTGATTTTTTATTAAAG | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: ilvG | ||||
Ortholog function: Acetolactate synthase large subunit (EC 2.2.1.6) | ||||
Shewanella oneidensis MR-1 | SO_4347 | -216 | 4.2 | CGTGATTATTAAATCACA |
Shewanella putrefaciens CN-32 | Sputcn32_3614 | -214 | 4.2 | CGTGATTATTAAATCACA |
Shewanella sp W3-18-1 | Sputw3181_3754 | -214 | 4.2 | CGTGATTATTAAATCACA |
Shewanella sp ANA-3 | Shewana3_0356 | -201 | 4.5 | AGTGATTATTAAATCACA |
Shewanella sp MR-4 | Shewmr4_0362 | -201 | 4.5 | AGTGATTATTAAATCACA |
Shewanella sp MR-7 | Shewmr7_3664 | -219 | 4.5 | AGTGATTATTAAATCACA |
Shewanella denitrificans OS217 | Sden_3414 | -153 | 4.6 | AGTGATTATTAAGTCACA |
Shewanella frigidimarina NCIMB 400 | Sfri_0422 | -202 | 4.6 | AGTGATTATTAAGTCACA |
Shewanella amazonensis SB2B | Sama_3281 | -157 | 4.5 | AGTGATTATTAAATCACA |
Shewanella loihica PV-4 | Shew_0289 | -166 | 4.5 | AGTGATTATTAAATCACA |
Shewanella pealeana ATCC 700345 | Spea_0345 | -181 | 4.2 | CGTGATTATTAAATCACA |
Shewanella halifaxensis HAW-EB4 | Shal_3944 | -193 | 4.2 | CGTGATTATTAAATCACA |
Shewanella piezotolerans WP3 | swp_0359 | -189 | 4.2 | CGTGATTATTAAATCACA |
Shewanella woodyi ATCC 51908 | Swoo_0442 | -190 | 4.2 | CGTGATTATTAAATCACA |