Propagation of IscR regulog to Shewanella sp MR-7
| Source regulog: | IscR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | Rrf2 |
| Regulation mode: | repressor |
| Biological process: | Iron-sulfur cluster biogenesis |
| Effector: | Iron-sulfur cluster redox state |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella sp MR-7 |
| Orthologous TF(s) | Shewmr7_1818 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -29
Score: 4.4 Sequence: TTATCCGAGTGACAGACTAAGGTAT
Locus tag: Shewmr7_0295
|
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| Shewmr7_0295 | -29 | 4.4 | TTATCCGAGTGACAGACTAAGGTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ygbA | ||||
| Ortholog function: hypothetical protein involved in nitrosative stress | ||||
| Shewanella oneidensis MR-1 | SO_0324 | -29 | 4.1 | TTATCCGAGTCACAGACTAAGGTAT |
| Shewanella putrefaciens CN-32 | Sputcn32_3663 | -29 | 4.9 | ATATCCGAGTAACTGACTAAGGTAT |
| Shewanella sp W3-18-1 | Sputw3181_3804 | -29 | 4.9 | ATATCCGAGTAACTGACTAAGGTAT |
| Shewanella sp ANA-3 | Shewana3_3845 | -29 | 4.4 | TTATCCGAGTGACAGACTAAGGTAT |
| Shewanella sp MR-4 | Shewmr4_3649 | -29 | 4.4 | TTATCCGAGTGACAGACTAAGGTAT |
| Shewanella sp MR-7 | Shewmr7_0295 | -29 | 4.4 | TTATCCGAGTGACAGACTAAGGTAT |
| Shewanella baltica OS155 | Sbal_4067 | -29 | 4.5 | ATATCCGAGTGACAAGCTAAGGTAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0404 | -43 | 5.6 | ATATCCGACTGTTTTACTAAGGTAT |
| Shewanella amazonensis SB2B | Sama_3326 | -30 | 5.1 | AAAACCAAGTAAATTACTTGGGTAT |
| Shewanella loihica PV-4 | Shew_0259 | -28 | 4.8 | ATAACCCAGTAAAGAAGTCAGATAT |
| Shewanella pealeana ATCC 700345 | Spea_0303 | -28 | 5 | ATAACCAAGTAGCTTACTAAGGTAT |
| Shewanella halifaxensis HAW-EB4 | Shal_3986 | -28 | 5.1 | ATAACCCAGTAACTTACTAAGGTAT |
| Shewanella piezotolerans WP3 | swp_2171 | -28 | 4.8 | ATAACCCAGTGGCTTACTAAGGTAT |
| Shewanella sediminis HAW-EB3 | Ssed_4199 | -125 | 5.4 | GTACCTTAGTAATTTACTAGGGTAT |
|
Position: -65
Score: 6.4 Sequence: ATACTTGACTGAAATACTCAGGTAT
Locus tag: Shewmr7_1818
|
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| Shewmr7_1818 | -65 | 6.4 | ATACTTGACTGAAATACTCAGGTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: iscR | ||||
| Ortholog function: Iron-sulfur cluster regulator IscR | ||||
| Shewanella oneidensis MR-1 | SO_2263 | -90 | 5.5 | ATACTTGAGTGATTTACTAGGTTTT |
| -65 | 6.4 | ATACTTGACTGATTTACTCGGGTAT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_2150 | -91 | 4.3 | TTACCTGAGTGTTTTAGTAGGACTT |
| -66 | 6.4 | ATACTTGACTAATTTACTCGGGTAT | ||
| Shewanella sp W3-18-1 | Sputw3181_1861 | -91 | 4.3 | TTACCTGAGTGTTTTAGTAGGACTT |
| -66 | 6.4 | ATACTTGACTAATTTACTCGGGTAT | ||
| Shewanella sp ANA-3 | Shewana3_2281 | -90 | 5.4 | ATACCTGAGTGTTTTACTAGGTTTT |
| -65 | 6.3 | ATACTTGACTGAAATACTCGGGTAT | ||
| Shewanella sp MR-4 | Shewmr4_1738 | -90 | 5.6 | ATACTTGAGTATTTTACTAGGGTTT |
| -65 | 6.4 | ATACTTGACTGAATTACTCGGGTAT | ||
| Shewanella sp MR-7 | Shewmr7_1818 | -90 | 5.4 | ATACTTGAGTGTTTTACTAGGTTTT |
| -65 | 6.4 | ATACTTGACTGAAATACTCAGGTAT | ||
| Shewanella baltica OS155 | Sbal_2398 | -90 | 5.4 | ATACTTGAGTGTTTTAGTAGGTTTT |
| -64 | 6.4 | ATACTTGACTGATTTACTCGGGTAT | ||
| Shewanella denitrificans OS217 | Sden_1457 | -88 | 5.1 | ATACTTGAGTAAAACACTAGGTTTA |
| -63 | 6.4 | ATACTTGACTAAATTACTCGGGTAT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2425 | -89 | 4.5 | ATACCCGAGTGTTTTGGTAGGATTA |
| -64 | 6.2 | ATACTTGACTAAATTACTAGGGTAT | ||
| Shewanella amazonensis SB2B | Sama_1292 | -91 | 5.6 | ATACTTGAGTAAATTAGTTGGTTTT |
| -66 | 6.5 | ATAGTTGACTAAATTACTCAGGTAT | ||
| Shewanella loihica PV-4 | Shew_2318 | -90 | 5.1 | ATACCTGACTAATCTGCTAGGTTTT |
| -65 | 6.4 | ATACTTGACTAAAACAGTCAAGTAT | ||
| Shewanella pealeana ATCC 700345 | Spea_1487 | -90 | 5 | ATACTTGACCGAATTGCTAGGCTTT |
| -65 | 6.4 | ATACTTGACTAAAATAGTCGGGTAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1571 | -90 | 4.5 | ATACCTGACCAAATAGCTAGGCTTA |
| -65 | 6 | ATACTTGACTGAAACGGTCGGGTAT | ||
| Shewanella piezotolerans WP3 | swp_1693 | -90 | 5.2 | ATACTTGACCAAACCACTAGGTTAA |
| -65 | 6.5 | ATACTTGACTAAATTACTCAGGTAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_2872 | -161 | 4.5 | ATACCCCACCAAAGTGGCAGGGTAT |
| -63 | 6.4 | ATACTTGACTAAAATAGTCGGGTAT | ||
| Shewanella woodyi ATCC 51908 | Swoo_1775 | -215 | 4.1 | TTTCGTGAGTATTATGGTAAAGATT |
| -90 | 5.1 | ATACTTGACTAAACTACTAGGTTTA | ||
| -65 | 6.4 | ATACTTGACTAAAACACTCAGGTAT | ||
|
Position: -90
Score: 5.2 Sequence: ATGCCCGACTAATTTAGTCAGGATT
Locus tag: Shewmr7_3627
|
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| Shewmr7_3627 | -90 | 5.2 | ATGCCCGACTAATTTAGTCAGGATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dnrN | ||||
| Ortholog function: Nitric oxide-dependent regulator DnrN or NorA | ||||
| Shewanella oneidensis MR-1 | SO_4302 | -167 | 5.1 | AATCTTGACTATTTTAGTCAAGATT |
| Shewanella putrefaciens CN-32 | Sputcn32_3576 | -90 | 5.6 | ATTCCTGAGTGTTTTAGTCGGGTTT |
| Shewanella sp W3-18-1 | Sputw3181_3715 | -90 | 5.6 | ATTCCTGAGTGTTTTAGTCGGGTTT |
| Shewanella sp ANA-3 | Shewana3_0397 | -90 | 5.2 | ATGCCCGACTAATTTAGTCAGGATT |
| Shewanella sp MR-4 | Shewmr4_0398 | -90 | 5.2 | ATGCCCGACTAATTTAGTCAGGATT |
| Shewanella sp MR-7 | Shewmr7_3627 | -90 | 5.2 | ATGCCCGACTAATTTAGTCAGGATT |
| Shewanella baltica OS155 | Sbal_3989 | -89 | 5.2 | AATCCTGAGTATTTTAGTCGGGTTT |
| Shewanella amazonensis SB2B | Sama_3236 | -87 | 4.8 | TTAACCCAGCAAAATACTCAAGTTT |
| Shewanella loihica PV-4 | Shew_0328 | -99 | 5.1 | AATCCCGAGTAAAACACTCAAGTTT |
| Shewanella pealeana ATCC 700345 | Spea_0383 | -102 | 5.8 | TTAACTGAGTATTTTACTCAAGTAA |
| Shewanella halifaxensis HAW-EB4 | Shal_3908 | -104 | 5.7 | TTACTTGAGCATTTTACTCAGGTAA |
| Shewanella piezotolerans WP3 | swp_0412 | -88 | 5.5 | TTACCCGAGCATTTTACTCAACTAA |
| Shewanella sediminis HAW-EB3 | Ssed_4124 | -98 | 5.6 | ATTCCTGAGCAATTTAGTCAAGTTT |
| Shewanella woodyi ATCC 51908 | Swoo_0492 | -97 | 5.4 | TTACCCTAGTGTTTTAGTCGGGAAT |
|
Position: -46
Score: 5 Sequence: AATTCTTACTAAAACACTCAGGTAT
Locus tag: Shewmr7_3880
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| Shewmr7_3880 | -46 | 5 | AATTCTTACTAAAACACTCAGGTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nfuA | ||||
| Ortholog function: NfuA Fe-S protein maturation | ||||
| Shewanella oneidensis MR-1 | SO_4619 | -46 | 5 | AATTCTTACTAAAACACTCAGGTAT |
| Shewanella putrefaciens CN-32 | Sputcn32_3794 | -46 | 5 | AATTCTTACTAAAACACTCAGGTAT |
| Shewanella sp W3-18-1 | Sputw3181_0119 | -46 | 5 | AATTCTTACTAAAACACTCAGGTAT |
| Shewanella sp ANA-3 | Shewana3_4003 | -46 | 5 | AATTCTTACTAAAACACTCAGGTAT |
| Shewanella sp MR-4 | Shewmr4_3804 | -46 | 5 | AATTCTTACTAAAACACTCAGGTAT |
| Shewanella sp MR-7 | Shewmr7_3880 | -46 | 5 | AATTCTTACTAAAACACTCAGGTAT |
| Shewanella baltica OS155 | Sbal_0142 | -46 | 5 | AATTCTTACTAAAACACTCAGGTAT |
| Shewanella denitrificans OS217 | Sden_3528 | -46 | 5.4 | GTATCTTACTAAATTACTCAGGTAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0244 | -46 | 5.1 | AATTCTTACTAATTTACTCAGGTAT |
| Shewanella amazonensis SB2B | Sama_3502 | -44 | 4.7 | AATTCTTAGTAATTTACTCAGGTTT |
| Shewanella loihica PV-4 | Shew_0106 | -46 | 4.5 | AATTCTTACTAAATCACTCGGGTTT |
| Shewanella pealeana ATCC 700345 | Spea_4010 | -47 | 4.5 | AATTCTTACTAAAACACTCAGGTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0247 | -47 | 4.5 | AATTCTTACTAAAACACTCAGGTTT |
| Shewanella piezotolerans WP3 | swp_4841 | -48 | 4.5 | AATTCTTACTAAAACACTCAGGTTT |
| Shewanella sediminis HAW-EB3 | Ssed_0179 | -47 | 4.3 | AATCCATACTAAAACACTCAAGCAT |
| Shewanella woodyi ATCC 51908 | Swoo_0159 | -46 | 4.4 | AATCCATACTAAAACACTCAAGTTT |