Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of FadR regulog to Shewanella sp MR-7

Reference regulog properties
Source regulog: FadR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor (activator)
Biological process: Fatty acid degradation
Effector: Palmitoyl-CoA; Oleoyl-CoA
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sp MR-7
Orthologous TF(s) Shewmr7_1643
Regulated genes 5
Built upon 101 sites [see more]
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

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Predicted regulatory interactions in Shewanella sp MR-7
Locus tag Position Score Sequence
Position: -196
Score: 4.8
Sequence: ATCTGGCCAGACCATTC
Position: -125
Score: 5.1
Sequence: ATCTGGTCGGACTTGTT
Locus tag: Shewmr7_1462
Shewmr7_1462 -196 4.8 ATCTGGCCAGACCATTC
-125 5.1 ATCTGGTCGGACTTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadL
Ortholog function: Long-chain fatty acid transport protein
Shewanella oneidensis MR-1 SO_3099 -196 4.8 ATCTGGCCAGACCATTC
-125 5.1 ATCTGGTCGGACTTGTT
Shewanella putrefaciens CN-32 Sputcn32_2470 -187 4.8 GTCTGGCCAGACCATTT
-104 5.1 ATCTGGTCGGACTTGTT
Shewanella sp W3-18-1 Sputw3181_1538 -187 4.8 GTCTGGCCAGACCATTT
-104 5.1 ATCTGGTCGGACTTGTT
Shewanella sp ANA-3 Shewana3_1450 -196 4.8 ATCTGGCCCGACCATTC
-125 5.1 ATCTGGTCGGACTTGTT
Shewanella sp MR-4 Shewmr4_1397 -196 4.8 ATCTGGCCAGACCATTC
-125 5.1 ATCTGGTCGGACTTGTT
Shewanella sp MR-7 Shewmr7_1462 -196 4.8 ATCTGGCCAGACCATTC
-125 5.1 ATCTGGTCGGACTTGTT
Shewanella baltica OS155 Sbal_2771 -211 4.8 ATCTGGCCAGACCATTC
-129 5.1 ATCTGGTCGGACTTGTT
Shewanella denitrificans OS217 Sden_1414 -76 4.8 AACTGGTCGGAGTTGTT
Shewanella frigidimarina NCIMB 400 Sfri_2687 -117 4.6 ATCTGGTCGGAGTTGTT
Shewanella amazonensis SB2B Sama_2178 -190 4.7 AACTGGCCCGGCCAGAC
-85 4.7 CTCTGGTCGGACTTGTT
Shewanella loihica PV-4 Shew_2436 -133 4.6 ATCTGGTCGGAGTTGTT
Shewanella pealeana ATCC 700345 Spea_2609 -118 4.5 TTCTGGTCGGAGTTGTT
Shewanella halifaxensis HAW-EB4 Shal_2681 -39 4.5 TTCTGGTCGGAGTTGTT
Shewanella piezotolerans WP3 swp_3153 -116 4.2 CTCTGGTCGGAGTTGTT
Shewanella sediminis HAW-EB3 Ssed_1618 -126 4.4 GTCTGGTCGGAGTTGTT
Shewanella woodyi ATCC 51908 Swoo_3037 -127 4.6 ATCTGGTCGGAGTTGTT
Position: -113
Score: 5.2
Sequence: TAATGGTCAGACCTGTT
Locus tag: Shewmr7_1472
Shewmr7_1472 -113 5.2 TAATGGTCAGACCTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadI
Ortholog function: FadI component of anaerobic fatty acid oxidation complex
Shewanella oneidensis MR-1 SO_3089 -109 5.2 TAATGGTCAGACCTGTT
Shewanella putrefaciens CN-32 Sputcn32_2460 -114 5.2 TAATGGTCAGACCTGTT
Shewanella sp W3-18-1 Sputw3181_1548 -114 5.2 TAATGGTCAGACCTGTT
Shewanella sp ANA-3 Shewana3_1460 -113 5.2 TAATGGTCAGACCTGTT
Shewanella sp MR-4 Shewmr4_1407 -113 5.2 TAATGGTCAGACCTGTT
Shewanella sp MR-7 Shewmr7_1472 -113 5.2 TAATGGTCAGACCTGTT
Shewanella baltica OS155 Sbal_2761 -114 5.2 TAATGGTCAGACCTGTT
Shewanella denitrificans OS217 Sden_1529 -88 4.7 TGATGGTCAGACCAGAA
Shewanella frigidimarina NCIMB 400 Sfri_2677 -82 4.9 TGATGGTCTGACCAGAT
Shewanella amazonensis SB2B Sama_2168 -89 5.2 TAATGGTCAGACCTGTT
Shewanella loihica PV-4 Shew_2426 -112 4.9 TGATGGTCTGACCTGTT
Shewanella pealeana ATCC 700345 Spea_2599 -94 4.9 TAATGGTCAGACCTGTC
Shewanella halifaxensis HAW-EB4 Shal_2671 -97 5.2 TAATGGTCAGACCTGTT
Shewanella piezotolerans WP3 swp_3140 -100 5.2 TAATGGTCAGACCTGTT
Shewanella sediminis HAW-EB3 Ssed_1628 -129 4.9 TGATGGTCAGACCTGTT
Shewanella woodyi ATCC 51908 Swoo_3027 -116 5.2 TAATGGTCAGACCTGTT
Position: -94
Score: 4.2
Sequence: CACAGGTCAGACCACAA
Locus tag: Shewmr7_2223
Shewmr7_2223 -94 4.2 CACAGGTCAGACCACAA
Supported by regulated orthologs from reference regulons