Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Crp regulog to Idiomarina loihiensis L2TR

Reference regulog properties
Source regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Propagated regulon:
Target genome Idiomarina loihiensis L2TR
Orthologous TF(s) No orthologous TFs found
Regulated genes 25
Built upon 2713 sites [see more]
Predicted regulatory interactions in Idiomarina loihiensis L2TR
Locus tag Position Score Sequence
Position: -4
Score: 3.8
Sequence: ATTTATGATTCGTATTTCAGAA
Locus tag: IL0248
IL0248 -4 3.8 ATTTATGATTCGTATTTCAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhgI
Ortholog function: NfuA Fe-S protein maturation
Shewanella oneidensis MR-1 SO4619 -129 3.9 AATCGTGATCACTATGGCAAAA
Shewanella putrefaciens CN-32 Sputcn32_3794 -129 4.2 AATCGTGATCACTTTTGCAAAA
Shewanella sp W3-18-1 Sputw3181_0119 -129 4.2 AATCGTGATCACTTTTGCAAAA
Shewanella sp ANA-3 Shewana3_4003 -128 4.1 AAGCGTGATGGATTTTGCAAAA
Shewanella sp MR-4 Shewmr4_3804 -128 4.1 AAGCGTGATGGATTTTGCAAAA
Shewanella sp MR-7 Shewmr7_3880 -128 4.1 AAGCGTGATGGATTTTGCAAAA
Shewanella baltica OS155 Sbal_0142 -129 4 AATCGTGATCGCTATGGCAAAA
Shewanella piezotolerans WP3 swp_4841 -131 3.8 AAATGTGATCAGAACTGCGTTA
Position: -84
Score: 3.7
Sequence: TGCTTTGACCCACCTCAAAGAT
Locus tag: IL0846
IL0846 -84 3.7 TGCTTTGACCCACCTCAAAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: map
Ortholog function: methionine aminopeptidase (EC 3.4.11.18)
Shewanella pealeana ATCC 700345 Spea_2886 -104 4.2 TAATTTGAAAAAAAGCACAAAT
Shewanella halifaxensis HAW-EB4 Shal_2982 -92 3.7 TAATATGAAAAAAAGCACAAAC
Shewanella piezotolerans WP3 swp_3524 -93 4.2 TATTTTGAAAAAAAGCACAAAT
Shewanella sediminis HAW-EB3 Ssed_3162 -91 3.9 TATTGAGAGAGCAAACACAAAT
Position: -49
Score: 4.1
Sequence: ATTTGTTATCGACCTAAAACAA
Locus tag: IL1179
IL1179 -49 4.1 ATTTGTTATCGACCTAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2858
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO2858 -105 4.8 TATTGTGAGTAAGTTCGCAAAT
Shewanella putrefaciens CN-32 Sputcn32_2359 -75 4.2 AGTCGTGATTGTGCTCACACCA
Shewanella sp W3-18-1 Sputw3181_1650 -75 4.2 AGTCGTGATTGTGCTCACACCA
Shewanella sp ANA-3 Shewana3_1574 -105 4 GGATGTGAGCCGCTTCGCAAAT
Shewanella sp MR-4 Shewmr4_1513 -105 3.9 CCGTGTGAGGTATTTCGCAAAT
Shewanella sp MR-7 Shewmr7_1580 -105 3.9 CCGTGTGAGGTATTTCGCAAAT
Shewanella baltica OS155 Sbal_2639 -75 4.2 AGTCGTGATTGTGCTCACACCA
Shewanella frigidimarina NCIMB 400 Sfri_1546 -237 4.9 TTTTGTGATGCAGATCTCAATC
Position: -4
Score: 3.7
Sequence: ACTTATGAGCCAAGTAACAATT
Locus tag: IL1465
IL1465 -4 3.7 ACTTATGAGCCAAGTAACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2871
Ortholog function: arsenate reductase (EC 1.20.4.1)
Shewanella loihica PV-4 Shew_1840 -51 3.8 CCCTGTGACTCGGCTCACCTTT
Shewanella pealeana ATCC 700345 Spea_1970 -64 4.8 CATTGTGACTATGATCACAAAA
Shewanella halifaxensis HAW-EB4 Shal_2329 -64 5.1 ATTTGTGACTCTGGTCACAAAT
Shewanella sediminis HAW-EB3 Ssed_2438 -64 5 TTTTGTGACTTTGCTCACCTTT
Shewanella woodyi ATCC 51908 Swoo_2168 -66 4.2 CCTTGTGACTTCGCTCACCTTT
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