Propagation of Crp regulog to Idiomarina loihiensis L2TR
| Source regulog: | Crp - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | repressor (activator) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Idiomarina loihiensis L2TR |
| Orthologous TF(s) | No orthologous TFs found |
| Regulated genes | 25 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -4
Score: 3.8 Sequence: ATTTATGATTCGTATTTCAGAA
Locus tag: IL0248
|
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| IL0248 | -4 | 3.8 | ATTTATGATTCGTATTTCAGAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhgI | ||||
| Ortholog function: NfuA Fe-S protein maturation | ||||
| Shewanella oneidensis MR-1 | SO4619 | -129 | 3.9 | AATCGTGATCACTATGGCAAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3794 | -129 | 4.2 | AATCGTGATCACTTTTGCAAAA |
| Shewanella sp W3-18-1 | Sputw3181_0119 | -129 | 4.2 | AATCGTGATCACTTTTGCAAAA |
| Shewanella sp ANA-3 | Shewana3_4003 | -128 | 4.1 | AAGCGTGATGGATTTTGCAAAA |
| Shewanella sp MR-4 | Shewmr4_3804 | -128 | 4.1 | AAGCGTGATGGATTTTGCAAAA |
| Shewanella sp MR-7 | Shewmr7_3880 | -128 | 4.1 | AAGCGTGATGGATTTTGCAAAA |
| Shewanella baltica OS155 | Sbal_0142 | -129 | 4 | AATCGTGATCGCTATGGCAAAA |
| Shewanella piezotolerans WP3 | swp_4841 | -131 | 3.8 | AAATGTGATCAGAACTGCGTTA |
|
Position: -84
Score: 3.7 Sequence: TGCTTTGACCCACCTCAAAGAT
Locus tag: IL0846
|
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| IL0846 | -84 | 3.7 | TGCTTTGACCCACCTCAAAGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: map | ||||
| Ortholog function: methionine aminopeptidase (EC 3.4.11.18) | ||||
| Shewanella pealeana ATCC 700345 | Spea_2886 | -104 | 4.2 | TAATTTGAAAAAAAGCACAAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2982 | -92 | 3.7 | TAATATGAAAAAAAGCACAAAC |
| Shewanella piezotolerans WP3 | swp_3524 | -93 | 4.2 | TATTTTGAAAAAAAGCACAAAT |
| Shewanella sediminis HAW-EB3 | Ssed_3162 | -91 | 3.9 | TATTGAGAGAGCAAACACAAAT |
|
Position: -49
Score: 4.1 Sequence: ATTTGTTATCGACCTAAAACAA
Locus tag: IL1179
|
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| IL1179 | -49 | 4.1 | ATTTGTTATCGACCTAAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2858 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO2858 | -105 | 4.8 | TATTGTGAGTAAGTTCGCAAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_2359 | -75 | 4.2 | AGTCGTGATTGTGCTCACACCA |
| Shewanella sp W3-18-1 | Sputw3181_1650 | -75 | 4.2 | AGTCGTGATTGTGCTCACACCA |
| Shewanella sp ANA-3 | Shewana3_1574 | -105 | 4 | GGATGTGAGCCGCTTCGCAAAT |
| Shewanella sp MR-4 | Shewmr4_1513 | -105 | 3.9 | CCGTGTGAGGTATTTCGCAAAT |
| Shewanella sp MR-7 | Shewmr7_1580 | -105 | 3.9 | CCGTGTGAGGTATTTCGCAAAT |
| Shewanella baltica OS155 | Sbal_2639 | -75 | 4.2 | AGTCGTGATTGTGCTCACACCA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1546 | -237 | 4.9 | TTTTGTGATGCAGATCTCAATC |
|
Position: -4
Score: 3.7 Sequence: ACTTATGAGCCAAGTAACAATT
Locus tag: IL1465
|
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| IL1465 | -4 | 3.7 | ACTTATGAGCCAAGTAACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2871 | ||||
| Ortholog function: arsenate reductase (EC 1.20.4.1) | ||||
| Shewanella loihica PV-4 | Shew_1840 | -51 | 3.8 | CCCTGTGACTCGGCTCACCTTT |
| Shewanella pealeana ATCC 700345 | Spea_1970 | -64 | 4.8 | CATTGTGACTATGATCACAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2329 | -64 | 5.1 | ATTTGTGACTCTGGTCACAAAT |
| Shewanella sediminis HAW-EB3 | Ssed_2438 | -64 | 5 | TTTTGTGACTTTGCTCACCTTT |
| Shewanella woodyi ATCC 51908 | Swoo_2168 | -66 | 4.2 | CCTTGTGACTTCGCTCACCTTT |